BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01305.1
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470144 jgi|Araly1|470144|fgenesh2_kg.1__98__AT1G01305.1 619 6e-177
> Ahg470144 jgi|Araly1|470144|fgenesh2_kg.1__98__AT1G01305.1
Length=463
Score = 619 bits (335), Expect = 6e-177
Identities = 422/464 (91%), Gaps = 6/464 (1%)
Strand=Plus/Plus
Query 2 TAAATCTACACACAAAACCTCATCAAAAACCATGGGAAAGCCAAG-AAGCGTGTCTCCGA 60
|||||||||||||||||||| | ||||||||||||||||||| || |||||| ||||||
Sbjct 1 TAAATCTACACACAAAACCTTACCAAAAACCATGGGAAAGCC-AGCAAGCGTATCTCCGG 59
Query 61 CCATCTTCCTCCTAGTCATCC-TCTTGGTGACCGCCGGAGAGAAGACGGAGGCGAAGCCA 119
| ||||||||||||||||||| || ||||||| |||||||||| ||| ||||||||||||
Sbjct 60 CGATCTTCCTCCTAGTCATCCTTC-TGGTGACGGCCGGAGAGACGACAGAGGCGAAGCCA 118
Query 120 TGGTGGAAGAAAGTCGGAGATTCCATCGGGAATATAGCCGGAGGAATAAGAAATGCGGTT 179
|||||| ||||||| ||||||||||||||||| || | ||||||| || || |||||||
Sbjct 119 TGGTGGGAGAAAGTAGGAGATTCCATCGGGAACATTGTCGGAGGAGTAGGAGATGCGGTG 178
Query 180 GGGAATTATAAACCAGTGGAGATGGGATTGTCGTTAAAAGGAGGATTTTGTGTGAGAAAG 239
||||||| |||| ||||||||||||||||||| || |||||||||| |||||||||| ||
Sbjct 179 GGGAATTTTAAAGCAGTGGAGATGGGATTGTCTTTGAAAGGAGGATCTTGTGTGAGAGAG 238
Query 240 CTTCTGTCTTTGAATACGAATGTGTTCAGTGAATGGTGTATAGCTCTTAATGATCCAAGA 299
||||| ||| ||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 239 CTTCTATCTGTGAGTACGAATATATTCAGTGAATGGTGTATAGCTCTTAATGATCCAAGA 298
Query 300 GCTCCTATGTACATGAAGATTGAGAATATACCAAGTGGTGTGTCAATCGAGTCCATTTTA 359
||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 GCTCCCATGTATATGAAGATTGAGAATATACCAACTGGTGTGTCAATCGAGTCCATTTTG 358
Query 360 AAGAAGCCTATTGATTTAATCAAG-AACCATTATCCCAATTTCTTGAAAGTTTGGAACTT 418
||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 359 AAGAAGCCTGTTGATTTTATCAAGCAA-CATTATCCCAATTTCTTGAAAGTTTGGAACTT 417
Query 419 TAACCAGAAAATTAAGAGAAAGCCTAGACGTGCTCTTTAATTTT 462
||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 418 TAACCAGAAAACTAAGAGAAAGCCGAGACGTGCTCTTTAATTTT 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22015774853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5