BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01310.1 Length=977 Score E Sequences producing significant alignments: (Bits) Value Ahg470143 jgi|Araly1|470143|fgenesh2_kg.1__97__AT1G01310.1 1308 0.0 > Ahg470143 jgi|Araly1|470143|fgenesh2_kg.1__97__AT1G01310.1 Length=844 Score = 1308 bits (708), Expect = 0.0 Identities = 801/846 (95%), Gaps = 6/846 (1%) Strand=Plus/Plus Query 3 TTTCACCTACAATTAACGTAATTAACTCTCCGATTAAACTTGATCCT-TTGTTTTGtttt 61 |||||||| || |||||||||||||||||||||||||| ||| | | | |||| |||| Sbjct 1 TTTCACCTTCATTTAACGTAATTAACTCTCCGATTAAATTTG-TTATCTCATTTT-TTTT 58 Query 62 tttGTAATGGAGCTTCGTAAACGGAAAATACGAGCTCCATTACATATCTTCGTCGGCATA 121 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 59 TTTGTAATGGAGCTCCGTAAACGGAAAATACGAGCTCCATTACACATCTTCGTCGGCATA 118 Query 122 ACGTTCTTCCT-CCTTCAGCTTTGGTCGGGAACGGCCCAAATTAACCATGAAGACTCTTC 180 ||||| || || ||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 119 ACGTTATT-CTACCTTCAGCTTTGGTCGGTAACGGCCCAAATTAACCATGAAGAGTCTTC 177 Query 181 CACAAAACCCTCCGTTAAAAACTCTCCGTCAGCGACGAGTACTCGGCTTCTGTTGTCACC 240 |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 178 CACAAAACCCTCGGTTAATAACTCCCCGTCAGCGACGAGTACTCGGCTTCTGTTGTCACC 237 Query 241 ACCTTCGTTCACCGGAAACCGATTCTCGTTCAGGTTCAGGTGGAGGAGAATACGACGTCG 300 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 238 ACCTTCGTTCACCGGAAACCGATTCTCGTTCACGTTCAGGTGGAGGAGAAGACGACGTCG 297 Query 301 TAACAGAGTCAACAGAGCGAGCAGAGAGTTTTTAATCGCACATAACCTCGTAAGAGCGCG 360 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 298 TAACAAAGTCAACAGAGCGAGCAGAGAGTTTTTAATCGCACATAACCTCGTACGAGCGCG 357 Query 361 CGTGGGAGAACCACCGTTTCAATGGGACGGAAGATTAGCGGCGTACGCGCGCACGTGGGC 420 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 358 CGTGGGAGAACCACCGTTTCAATGGGACGGAAGACTAGCGGCGTACGCGCGCACGTGGGC 417 Query 421 GAATCAGCGCGTGGGTGATTGTAGGCTTGTTCACTCTAACGGGCCGTATGGAGAAAACAT 480 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GAATCAGCGCGTGGGAGATTGTAGGCTTGTTCACTCTAACGGGCCGTATGGAGAAAACAT 477 Query 481 ATTTTGGGCCGGAAAGAATAACTGGAGCCCCAGAGATATTGTTAATGTGTGGGCCGATGA 540 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 478 ATTTTGGGCCGGAAAGAATAACTGGAGGCCCAGAGATATTGTTAACGTGTGGGCCGATGA 537 Query 541 GGATAAATTCTACGACGTGAAAGGTAACACGTGTGAGCCGCAACACATGTGTGGGCACTA 600 | |||||||||||||||||| ||||||||||||||||||||||||||||||||| || || Sbjct 538 GAATAAATTCTACGACGTGAGAGGTAACACGTGTGAGCCGCAACACATGTGTGGACATTA 597 Query 601 CACGCAGATCGTGTGGAGAGATAGTACCAAGGTCGGATGCGCAAGTGTGGATTGTTCGAA 660 ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 598 CACGCAGATCGTGTGGAGAGATAGTACCAAGGTTGGATGCGCACGTGTGGATTGTTCAAA 657 Query 661 CGGCGGCGTTTATGCGATTTGTGTTTATAACCCACCGGGAAATTACGAAGGTGAAAATCC 720 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 CGGCGGCGTTTACGCCATTTGTGTTTATAACCCACCGGGAAATTACGAAGGTGAAAATCC 717 Query 721 GTTTGGAAGTTATGATGATCAGATTGGTCTTGCCCGGGATGATCCACCGGCGGTGATCGG 780 |||||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||| Sbjct 718 GTTTGGAAGTAATGATGGTCAGATTGGTCTTGTCCGGGATGAACCACCGGCGGTGATCGG 777 Query 781 AGGAATGGCTTGAGAGTGGAGGACACGGCGGTGTCACAATCCACTTTTAGTTACTA-Att 839 ||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||| Sbjct 778 AGGAATGGCTTGAGAGTGGAGGACACGGCGGTGACACAATCCACGTTTAGTTATTATATT 837 Query 840 tttttt 845 |||||| Sbjct 838 TTTTTT 843 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36293016984 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5