BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01310.1
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470143 jgi|Araly1|470143|fgenesh2_kg.1__97__AT1G01310.1 1308 0.0
> Ahg470143 jgi|Araly1|470143|fgenesh2_kg.1__97__AT1G01310.1
Length=844
Score = 1308 bits (708), Expect = 0.0
Identities = 801/846 (95%), Gaps = 6/846 (1%)
Strand=Plus/Plus
Query 3 TTTCACCTACAATTAACGTAATTAACTCTCCGATTAAACTTGATCCT-TTGTTTTGtttt 61
|||||||| || |||||||||||||||||||||||||| ||| | | | |||| ||||
Sbjct 1 TTTCACCTTCATTTAACGTAATTAACTCTCCGATTAAATTTG-TTATCTCATTTT-TTTT 58
Query 62 tttGTAATGGAGCTTCGTAAACGGAAAATACGAGCTCCATTACATATCTTCGTCGGCATA 121
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 59 TTTGTAATGGAGCTCCGTAAACGGAAAATACGAGCTCCATTACACATCTTCGTCGGCATA 118
Query 122 ACGTTCTTCCT-CCTTCAGCTTTGGTCGGGAACGGCCCAAATTAACCATGAAGACTCTTC 180
||||| || || ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 119 ACGTTATT-CTACCTTCAGCTTTGGTCGGTAACGGCCCAAATTAACCATGAAGAGTCTTC 177
Query 181 CACAAAACCCTCCGTTAAAAACTCTCCGTCAGCGACGAGTACTCGGCTTCTGTTGTCACC 240
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 CACAAAACCCTCGGTTAATAACTCCCCGTCAGCGACGAGTACTCGGCTTCTGTTGTCACC 237
Query 241 ACCTTCGTTCACCGGAAACCGATTCTCGTTCAGGTTCAGGTGGAGGAGAATACGACGTCG 300
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 238 ACCTTCGTTCACCGGAAACCGATTCTCGTTCACGTTCAGGTGGAGGAGAAGACGACGTCG 297
Query 301 TAACAGAGTCAACAGAGCGAGCAGAGAGTTTTTAATCGCACATAACCTCGTAAGAGCGCG 360
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 298 TAACAAAGTCAACAGAGCGAGCAGAGAGTTTTTAATCGCACATAACCTCGTACGAGCGCG 357
Query 361 CGTGGGAGAACCACCGTTTCAATGGGACGGAAGATTAGCGGCGTACGCGCGCACGTGGGC 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 CGTGGGAGAACCACCGTTTCAATGGGACGGAAGACTAGCGGCGTACGCGCGCACGTGGGC 417
Query 421 GAATCAGCGCGTGGGTGATTGTAGGCTTGTTCACTCTAACGGGCCGTATGGAGAAAACAT 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAATCAGCGCGTGGGAGATTGTAGGCTTGTTCACTCTAACGGGCCGTATGGAGAAAACAT 477
Query 481 ATTTTGGGCCGGAAAGAATAACTGGAGCCCCAGAGATATTGTTAATGTGTGGGCCGATGA 540
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 478 ATTTTGGGCCGGAAAGAATAACTGGAGGCCCAGAGATATTGTTAACGTGTGGGCCGATGA 537
Query 541 GGATAAATTCTACGACGTGAAAGGTAACACGTGTGAGCCGCAACACATGTGTGGGCACTA 600
| |||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 538 GAATAAATTCTACGACGTGAGAGGTAACACGTGTGAGCCGCAACACATGTGTGGACATTA 597
Query 601 CACGCAGATCGTGTGGAGAGATAGTACCAAGGTCGGATGCGCAAGTGTGGATTGTTCGAA 660
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 598 CACGCAGATCGTGTGGAGAGATAGTACCAAGGTTGGATGCGCACGTGTGGATTGTTCAAA 657
Query 661 CGGCGGCGTTTATGCGATTTGTGTTTATAACCCACCGGGAAATTACGAAGGTGAAAATCC 720
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CGGCGGCGTTTACGCCATTTGTGTTTATAACCCACCGGGAAATTACGAAGGTGAAAATCC 717
Query 721 GTTTGGAAGTTATGATGATCAGATTGGTCTTGCCCGGGATGATCCACCGGCGGTGATCGG 780
|||||||||| |||||| |||||||||||||| ||||||||| |||||||||||||||||
Sbjct 718 GTTTGGAAGTAATGATGGTCAGATTGGTCTTGTCCGGGATGAACCACCGGCGGTGATCGG 777
Query 781 AGGAATGGCTTGAGAGTGGAGGACACGGCGGTGTCACAATCCACTTTTAGTTACTA-Att 839
||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |||
Sbjct 778 AGGAATGGCTTGAGAGTGGAGGACACGGCGGTGACACAATCCACGTTTAGTTATTATATT 837
Query 840 tttttt 845
||||||
Sbjct 838 TTTTTT 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36293016984
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5