BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01340.2
Length=2397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470141 jgi|Araly1|470141|fgenesh2_kg.1__95__AT1G01340.1 3465 0.0
Ahg327678 jgi|Araly1|327678|fgenesh1_pm.C_scaffold_6002898 1611 0.0
Ahg914276 jgi|Araly1|914276|Al_scaffold_0001_4530 115 1e-24
> Ahg470141 jgi|Araly1|470141|fgenesh2_kg.1__95__AT1G01340.1
Length=2342
Score = 3465 bits (1876), Expect = 0.0
Identities = 2061/2151 (96%), Gaps = 10/2151 (0%)
Strand=Plus/Plus
Query 205 AGGTTCAAAGATGAAGGCAAACCATTATCCTCTGAATATGGTTATGGAAGAAAAGCTAGA 264
|||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||
Sbjct 195 AGGTTCAAAGATGAAGACAGATCATTATCCTCTGAGTATGGTTATGGAAGAAAAGCTAGA 254
Query 265 CCTTCTTTAGATAGAGTTTTCAAGAATGTAAAATGGGGATTCAAGAAGCCATTGAGTTTC 324
||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 255 CCTTCTTTAGACAGAGTTTTCAAGAATGTAAAGTGGGGATTCAAGAAGCCATTAAATTTC 314
Query 325 CCTTCACATAAGGATCCTGACCACAAGGAAACATCTAGTGTTACTCGGAAGAACATCATA 384
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 315 CGTTCACATAAGGATCCTGACCACAAGGAAACATCTAGTATTACTCGGAAGAACATCATA 374
Query 385 AACCCGCAGGATTCGTTTCTCCAGAACTGGAACAAAATATTTTTATTTGCTTGTGTGGTT 444
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 375 AACCCGCAGGATTCGTTTCTCCAGAATTGGAACAAAATATTTCTCTTTGCTTGTGTGGTT 434
Query 445 GCTTTGGCGATTGATCCATTGTTTTTCTACATTCCCATTGTCGATAGCGCAAGGCACTGT 504
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 435 GCTTTGGCGATTGATCCATTGTTTTTCTACATTCCCATTGTCGATGGCGCAAGGCACTGT 494
Query 505 CTTACTTTGGACTCAAAGTTGGAGATAGCTGCGAGTTTGCTTCGTACGCTCATCGATGCC 564
|||||||||||| |||||||||||||||||| ||||| ||||| || ||||||||||||
Sbjct 495 CTTACTTTGGACAAAAAGTTGGAGATAGCTGCAAGTTTTCTTCGGACACTCATCGATGCC 554
Query 565 TTTTACATTATTCACATTGTGTTTCAGTTCAGGACAGCTTACATCGCTCCTTCTTCGCGG 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TTTTACATTATTCACATTGTGTTTCAGTTCAGGACAGCTTACATCGCTCCTTCTTCGCGG 614
Query 625 GTTTTTGGAAGAGGTGAACTGGTAGATGATGCTAAGGCAATAGCCT-TAAAGTATCTCTC 683
|||||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||
Sbjct 615 GTTTTTGGAAGAGGTGAATTGGTAGATGATGCTAAGGCTATAG-CTATAAAGTATCTCTC 673
Query 684 TTCTTACTTCATCATTGATCTACTCTCTATCCTTCCTCTCCCACAGATAGTAGTTTTAGC 743
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 674 ATCTTACTTCATCATTGATGTACTCTCTATCCTTCCTCTCCCACAGATAGTAGTTTTAGC 733
Query 744 CGTTATTCCAAGCGTCAACCAGCCAGTCTCTTTGCTAACAAAAGACTACCTTAAAT-TTT 802
|||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| | |
Sbjct 734 CGTTATTCAAAGCGTCAACCAGCCAGTCTCTTTGTTCACAAAAGACTACCTTAAATATGT 793
Query 803 CCATAATTGCTCAATATGTTCCTCGGATTCTCCGTATGTATCCGCTTTACACTGAAGTGA 862
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 794 -CATAATTGCTCAATATGTTCCTCGGATTCTCCGTATGTATCCGCTTTACACCGAAGTGA 852
Query 863 CAAGAACATCTGGCATTGTTACTGAAACAGCATGGGCTGGAGCTGCTTGGAACCTCTCTC 922
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 853 CCAGAACATCTGGCATTGTTACTGAAACAGCAAGGGCTGGAGCTGCTTGGAACCTCTCTC 912
Query 923 TCTATATGTTAGCCAGTCATGTGTTTGGAGCTTTATGGTACTTAATCTCAGTAGAACGAG 982
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 913 TCTATATGTTAGCCAGTCATGTATTTGGAGCTTTATGGTACTTAATCTCAGTAGAACGAG 972
Query 983 AAGACAGATGCTGGCAAGAGGCATGCGAGAAGACAAAAGGTTGTAATATGAAATTCCTCT 1042
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 973 AAGACAGATGCTGGCAAGAGGCATGCGAGAAGACAAAAGGTTGTGATAAGAAATTTCTCT 1032
Query 1043 ACTGTGAAAACGATCGTAAC-GTTAGCAACAATTTCCTGACCACTTCTTGCCCATTTCTC 1101
|||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct 1033 ACTGTGAAAACGATCG-CACTGTTAGCAACAATTTCCTGACCACTTCTTGCCCATTTATC 1091
Query 1102 GACCCTGGTGATATAACAAACTCAACCATCTTCAACTTTGGCATCTTCACTGATGCTCTT 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 GACCCTGGTGATATAACAAACTCAACCATCTTCAACTTTGGCATCTTCACTGATGCTCTT 1151
Query 1162 AAGAGTGGCGTTGTTGAATCACATGATTTCTGGAAGAAATTCTTCTACTGCTTCTGGTGG 1221
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AAGAGTGGGGTCGTTGAATCACATGATTTCTGGAAGAAATTCTTCTACTGCTTCTGGTGG 1211
Query 1222 GGTCTTCGAAATCTGAGTGCATTGGGACAGAATCTCCAAACTAGCAAATTCGTTGGTGAA 1281
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1212 GGTCTGCGAAATCTGAGTGCATTGGGACAGAATCTCCAAACAAGCAAATTCGTTGGTGAA 1271
Query 1282 ATCATATTTGCTATATCAATCTGCATATCTGGACTAGTCTTATTTGCTCTACTTATCGGC 1341
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1272 ATCATATTTGCTATATCAATCTGCATATCTGGACTAGTCTTATTTGCGCTACTTATCGGC 1331
Query 1342 AATATGCAGAAATATTTGGAGTCAACAACAGTTCGAGAAGAGGAAATGAGGGTGAGAAAG 1401
|||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1332 AATATGCAGAAATACTTGGAATCAACAACAGTTCGAGAGGAGGAAATGAGAGTGAGAAAG 1391
Query 1402 AGAGATGCAGAGCAGTGGATGTCTCATAGAATGTTACCTGAAGACCTGAGGAAACGTATC 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AGAGATGCAGAGCAGTGGATGTCTCATAGAATGTTACCTGAAGACCTGAGGAAACGTATC 1451
Query 1462 AGAAGATATGAACAATATAGATGGCAAGAGACAAGAGGAGTTGAAGAAGAAACCCTTCTT 1521
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1452 AGAAGATATGAACAATATAGATGGCAAGAGACAAGAGGAGTCGAAGAAGAAACCCTTCTT 1511
Query 1522 CGTAACCTCCCTAAAGACCTCAGAAGAGATATTAAACGCCATCTTTGCCTCGATCTCCTC 1581
|||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||
Sbjct 1512 CGTAACCTCCCTAAAGACCTTAGAAGAGACATTAAACGCCATCTCTGCCTTGATCTCCTC 1571
Query 1582 AAGAAAGTACCTTTGTTTGAGATAATGGATGAGCAGTTACTTGACGCGGTTTGCGATAGG 1641
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1572 AAGAAAGTACCTTTGTTTGAGATAATGGACGAACAGTTACTTGACGCGGTTTGCGATAGG 1631
Query 1642 CTAAGACCTGTGCTCTACACCGAGAACAGTTACGTGATCCGTGAAGGAGATCCTGTTGGG 1701
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1632 CTAAAACCTGTGCTCTACACAGAGAACAGTTACGTGATCCGTGAAGGAGATCCTGTTGGA 1691
Query 1702 GAAATGTTGTTTGTTATGAGAGGAAGACTGGTAAGTGCCACCACTAATGGAGGAAGAAGT 1761
|||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1692 GAAATGCTGTTTGTGATGAGAGGAAGACTCGTAAGTGCCACCACTAATGGAGGAAGAAGT 1751
Query 1762 GGGTTCTTCAATGCCGTGAACCTAAAGGCAAGTGATTTCTGCGGAGAAGATCTTCTCCCG 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 GGGTTCTTCAATGCCGTGAACCTAAAGGCAAGTGATTTCTGCGGAGAAGATCTTCTCCCG 1811
Query 1822 TGGGCATTAGATCCTCAATCTTCTTCTCACTTTCCCATCTCGACAAGAACAGTTCAAGCT 1881
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1812 TGGGCATTAGATCCTCAATCTTCTTCTCACTTTCCTATCTCGACAAGAACAGTTCAAGCT 1871
Query 1882 CTCACTGAAGTCGAAGCCTTTGCTCTCACAGCTGAGGATCTCAAGTCTGTCGCTTCACAA 1941
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1872 CTCACCGAAGTCGAAGCCTTTGCTCTTACAGCTGAGGATCTCAAGTCTGTCGCTTCACAA 1931
Query 1942 TTCAGACGCCTCCATAGCAAGCAACTCCAACATACTTTTC-GGTTTTACTCAGTGCAATG 2000
||||||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||
Sbjct 1932 TTCAGACGCCTCCATAGCAAGCAGCTCCAACATACTTT-CAGGTTTTATTCAGTGCAATG 1990
Query 2001 GAGAACATGGAGCGTGTCTTTTATACAAGCAGCGTGGAGGAGATACTGTCGGAGGAAGTT 2060
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1991 GAGAACATGGAGCGTATCTTTTATACAAGCAGCGTGGCGGAGATACTGTCGGAGGAAGTT 2050
Query 2061 AGCCAAGTCACTACGCGATGAAGAAGATCGTCTCCGAGAAGCGCTCGCTAGTCAAGATAA 2120
||| |||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 2051 AGCAAAGTCATTACGCGATGAAGAAGAGCGTCTCCGAGAAGCGCTGGCTAATCAAGATAA 2110
Query 2121 AGAACACAATGCTGCAACCGTGTCGTCGTCCTTGAGCCTTGGAGGCGCTCTTTACGCGTC 2180
||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2111 AGAACGCAATGCTGCAACCGTGTCTTCGTCCTTGAGCCTTGGAGGTGCTCTTTACGCGTC 2170
Query 2181 GCGTTTCGCATCAAACGCGCTTCACAATCTGAGGCACAATATCTCCAACCTTCCTCCTCG 2240
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2171 GCGTTTCGCTTCAAACGCGCTTCACAATCTGAGGCACAATATATCCAACCTTCCTCCCCG 2230
Query 2241 CTACACTCTTCCTTTGCTACCTCAAAAACCCACCGAGCCTGACTTCACCGCCAATCATAC 2300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2231 CTACACTCTTCCTTTGCTACCTCAAAAACCCACCGAGCCTGACTTCACCGCCAATCACAC 2290
Query 2301 AACTGACCCTTAGATCTCTCTTGCATGTGTATAGTGTGTGGAATAAAGTGT 2351
||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 2291 AACTGACCCTTAGATCTCT-TA-CATGTGTATAGTGTGTGGAATACAGTGT 2339
Score = 137 bits (74), Expect = 3e-31
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 123 AGGACTCGTCACCCTGTAAGCGAAAGATCAGTTGAAATATACAAGGGTTTGGCTGATGGC 182
|||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 53 AGGATTCGTCACACTGTAAGCGAAAGATCAGTTGAAATATACAA-GGTTTGGCTGATGGC 111
Query 183 ATTTAGCCATGATAATCGTGTAAGGTT 209
||||||||||||||||||| |||||||
Sbjct 112 ATTTAGCCATGATAATCGTCTAAGGTT 138
> Ahg327678 jgi|Araly1|327678|fgenesh1_pm.C_scaffold_6002898
Length=2094
Score = 1611 bits (872), Expect = 0.0
Identities = 1475/1762 (84%), Gaps = 57/1762 (3%)
Strand=Plus/Plus
Query 372 GAAGAACATCATAAACCCGC-AGGATTCGTTTCTCCAGAACTGGAACAAAATATTT-TTA 429
|||||| || |||||||| | ||| || ||| | ||||||||||||||||| ||| ||
Sbjct 198 GAAGAATATTATAAACCCACAAGG-CTCTTTTTTGCAGAACTGGAACAAAATCTTTCTT- 255
Query 430 TTTGCTTGTGTGGTTGCTTTGGCGATTGATCCATTGTTTTTCTACATTCCCATTGTCGAT 489
||||||| |||| |||||||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 256 TTTGCTTCTGTGATTGCTTTGGCCATTGATCCATTGTTTTTCTATATTCCTATTGTTGAT 315
Query 490 AGCGCAAGGCACTGTCTTACTTTGGACTCA-AAGTTGGAGATAGCTGCGAGTTTGCTTCG 548
| | ||| |||| |||| |||| | ||| || |||||| |||| || ||| |||||||
Sbjct 316 GGAGAAAGAAACTGCCTTAATTTGCA-TCATAACTTGGAGGTAGCAGCTAGTGTGCTTCG 374
Query 549 TACGCTCATCGATGCCTTTTACATTATTCACATTGTGTTTCAGTTCAGGACAGCTTACAT 608
|||| | || |||||||| ||||| |||||||||||||||||||| || || ||||| ||
Sbjct 375 TACGTTTATAGATGCCTTCTACATCATTCACATTGTGTTTCAGTTTAGAACTGCTTATAT 434
Query 609 CGCTCCTTCTTCGCGGGTTTTTGGAAGAGGTGAACTGGTAGATGATGCTAAGGCAATAGC 668
|||||||||| |||||||| |||||||| || |||| |||||| |||| || |||||
Sbjct 435 TTCTCCTTCTTCTCGGGTTTTCGGAAGAGGCGAGTTGGTTGATGATCCTAAAGCTATAGC 494
Query 669 C-TTAAAGTATCTCTCTTCTTACTTCATCATTGATCTACTCTCTATCCTTCCTCTCCCAC 727
| || ||||||||||| || ||||||||||| ||| | |||||||||||||| |||||||
Sbjct 495 CATT-AAGTATCTCTCCTCCTACTTCATCATCGATGTTCTCTCTATCCTTCCACTCCCAC 553
Query 728 AGATAGTAGTTTTAGCCGTTAT-TCCAAGCGTCAACCAGCCAGTCTCTTTGCTAACAAAA 786
|| | ||||| ||||| ||||| |||| |||||| |||| ||||||||| | || ||
Sbjct 554 AGCTTGTAGTCTTAGCTGTTATCCCCAA-TGTCAACAAGCCGGTCTCTTTGATCACTAAG 612
Query 787 GACTACCTTAAATT--T-TCCATAATTGCTCAATATGTTCCTC-GGATTCTCCGTATGTA 842
|| || ||| ||| | | |||| || ||| ||| |||| | ||||||| ||||| ||
Sbjct 613 GAGTA-CTT-GATTACTGT-CATATTTACTCTATACATTCC-CAGGATTCTTCGTATTTA 668
Query 843 TCCGCTTTACACTGAAGTGACAAGAACATCTGGCATTGTTACTGAAACAGCATGGGCTGG 902
||| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||
Sbjct 669 TCCACTTTACACTGAAGTTACAAGAACATCTGGCATAGTTACTGAAACCGCTTGGGCTGG 728
Query 903 AGCTGCTTGGAACCTCTCTCTCTATATGTTAGCCAGTCATGTGTTTGGAGCTTTATGGTA 962
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 729 AGCTGCTTGGAACCTATCTCTCTATATGTTAGCCAGTCATGTGTTTGGAGCGTTATGGTA 788
Query 963 CTTAATCTCAGTAGAACGAGAAGACAGATGCTGGCAAGAGGCATGCGAGAAGACA--A-A 1019
|||||| |||||||||||||||||||||||||||| || || |||||||||| | | |
Sbjct 789 CTTAATATCAGTAGAACGAGAAGACAGATGCTGGCGTGAAGCTTGCGAGAAGATACCAGA 848
Query 1020 AGGT-TGTAA-TATGAAATTCCTCTACTGTGA---AAACGATCGTAACGTTAGCAACAAT 1074
|| | |||| | | | ||| |||||||| || |||| | ||| ||||| ||| ||
Sbjct 849 AG-TATGTACCTTT-AGATTTCTCTACTGCGATGGAAAC-A--GTAGTGTTAGAAACGAT 903
Query 1075 TTCCTGACCA-CTTCTTGCCCATTTCTCGACCCTGGTGATATAACAAACTCAACCATCTT 1133
|||||||| | || | ||||| ||| || |||||| ||||||||| || ||||| ||||
Sbjct 904 TTCCTGACAAACT-CGTGCCCGTTTATCAACCCTGATGATATAACGAATTCAACGGTCTT 962
Query 1134 CAACTTTGGCATCTTCACTGATGCTCTTAA-GAGTGGCG-TTGTTGAATCACATGATTTC 1191
||||||||||||||| ||||||||| |||| |||||| | ||||||||||| ||||||||
Sbjct 963 CAACTTTGGCATCTTTACTGATGCT-TTAAAGAGTGG-GATTGTTGAATCAGATGATTTC 1020
Query 1192 TGGAAGAAATTCTTCTACTGCTTCTGGTGGGGTCTT-CGAAATCTGAGTGCATTGGGACA 1250
|||||||| |||||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct 1021 TGGAAGAAGTTCTTCTACTGCTTCTGGTGGGGT-TTGCGTAATTTAAGTGCATTGGGACA 1079
Query 1251 GAATCTCCAA-ACTAGCAAATTCGTTGGTGAAATCATATTTGCTATATCAATCTGCATAT 1309
|||||| || || |||||||||||||| |||||||| |||||| ||||||| |||||||
Sbjct 1080 AAATCTC-AATACGAGCAAATTCGTTGGGGAAATCATCTTTGCTGTATCAATTTGCATAT 1138
Query 1310 CTGGACTAGTCTTATTTGCTCTACTTATCGGCAATATGCAGAAATATTTGGAGTCAACAA 1369
|||||||||||||||| || |||||||||||||||||||||||||| ||||| || ||||
Sbjct 1139 CTGGACTAGTCTTATTCGCACTACTTATCGGCAATATGCAGAAATACTTGGAATCGACAA 1198
Query 1370 CAGTTCGAGAAGAGGAAATGAGGGTGAGAAAGAGAGATGCAGAGCAGTGGATGTCTCATA 1429
||||| | |||||||| ||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1199 CAGTTAGGGAAGAGGAGATGAGAGTGAGAAAAAGAGATGCAGAGCAATGGATGTCTCATC 1258
Query 1430 GAATGTTACCTGAAGACCTGAGGAAACGTATCAGAAGATATGAACAATATAGATGGCAAG 1489
|||||||||| || ||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1259 GAATGTTACCCGATGACTTGAGGAAACGTATCAGAAGGTATGAACAATATAAATGGCAAG 1318
Query 1490 AGACAAGAGGAGTTGAAGAAGAAACCCTTCTTCGTAACCTCCCTAAAGACCTCAGAAGAG 1549
| || |||||||| |||||||||| |||||| ||||| ||||||||||||||||| ||||
Sbjct 1319 AAACTAGAGGAGTCGAAGAAGAAAACCTTCTGCGTAATCTCCCTAAAGACCTCAGGAGAG 1378
Query 1550 ATATTAAACGCCATCTTTGCCTCGATCTCCTCAAGAAAGTACCTTTGTTTGAGATAATGG 1609
| || ||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct 1379 ACATCAAACGCCATTTTTGCCTCGATCTTCTCAAGAAAGTACCTCTGTTCGAGATAATGG 1438
Query 1610 ATGAGCAGTTACTTGACGCGGTTTGCGATAGGCTAAGACCTGTGCTCTACACCGAGAACA 1669
||||||| || || || || || || || | ||||| ||| ||||| ||||| |||||||
Sbjct 1439 ATGAGCAATTGCTAGATGCCGTGTGTGACAAGCTAAAACCCGTGCTATACACTGAGAACA 1498
Query 1670 GTTACGTGATCCGTGAAGGAGATCCTGTTGG-GGAAATGTTGTTTGTTATGAGAGGAAGA 1728
| || | || || |||||||| || || || ||| ||||||||||| |||||||||| |
Sbjct 1499 GCTATGCAATTCGAGAAGGAGACCCAGT-GGAGGAGATGTTGTTTGTCATGAGAGGAAAA 1557
Query 1729 CTGGTAAGTGCCACCACTAATGGAGGAAGAAGTGGGTTCTTCAATGCCGTGA-ACCTAAA 1787
||| | || |||||||| || || || | | || ||||| || ||||| | |||||||
Sbjct 1558 CTGATGAGCGCCACCACAAACGGTGGCCGGACCGGCTTCTTTAACGCCGT-ATACCTAAA 1616
Query 1788 GGCAAGTGA-TTTCTGCGGAGAAGATCTTCTCCCGTGGGCATTAGATCCTCAATCTTCTT 1846
| ||||| ||| ||||| |||||||||||| | |||||||| |||||||||||||| |
Sbjct 1617 ACCTAGTGACTTT-TGCGGCGAAGATCTTCTCACATGGGCATTGGATCCTCAATCTTCGT 1675
Query 1847 CTCACTTTCCCATCTCGACAAGAACAGTTCAAGCTCTCACTGAAGTCGAAGCCTTTGCTC 1906
|||| ||||| || ||||| ||||||||||||||| | || ||||| ||||||||||||
Sbjct 1676 CTCATTTTCCGATATCGACGAGAACAGTTCAAGCTTTAACCGAAGTAGAAGCCTTTGCTT 1735
Query 1907 TCA-CAGCTGAGGATCTCAAG-TCTGTCGCTTCACAATTCAGACGCCTCCATAGCAAGCA 1964
| | |||| || ||||||||| || || ||||||||||||||||| ||||||||||| ||
Sbjct 1736 T-AGCAGCAGATGATCTCAAGCTC-GTTGCTTCACAATTCAGACGACTCCATAGCAAACA 1793
Query 1965 ACTCCAACATACTTTTC-GGTTTTACTCAGTGCAATGGAGAACATGGAGCGTGTCTTTTA 2023
|| ||||||||||| | ||||||| || || ||||||||||| ||| | | |||||| |
Sbjct 1794 GCTTCAACATACTTT-CAGGTTTTATTCGGTACAATGGAGAACTTGGGGTGCGTCTTTCA 1852
Query 2024 TACAAGCAGCGTGGAGGAGATACTGTCGGAGGAAGTTAGCCAAGTCACTA-CGCGATGAA 2082
||||||| |||||| ||||| | || |||||||| |||| | |||| || | ||| |||
Sbjct 1853 TACAAGCGGCGTGGCGGAGACATTGCCGGAGGAAACTAGCTAGGTCATTAAC-CGAAGAA 1911
Query 2083 GAAGATCG-TCTCCGAGAAGCG 2103
|||||||| | ||||||| |||
Sbjct 1912 GAAGATCGGT-TCCGAGACGCG 1932
> Ahg914276 jgi|Araly1|914276|Al_scaffold_0001_4530
Length=522
Score = 115 bits (62), Expect = 1e-24
Identities = 74/80 (93%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 2108 CTAGTCAAGATAAAGAACACAATGCTGCAACCGTGTCGTCGTCCTTGAGCCTTGGAGGCG 2167
|||||||||||||||||| ||||||||||| | || ||||||||||||||||||||||
Sbjct 83 CTAGTCAAGATAAAGAACGTAATGCTGCAACTGCATCTTCGTCCTTGAGCCTTGGAGGCG 24
Query 2168 CTCTTTACGCGTCGCGTTTC 2187
||||||||||||||||||||
Sbjct 23 CTCTTTACGCGTCGCGTTTC 4
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90311970895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5