BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01350.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918833 jgi|Araly1|918833|scaffold_100114.1 1607 0.0
Ahg952015 jgi|Araly1|952015|scaffold_30000002.1 244 1e-63
Ahg930488 jgi|Araly1|930488|scaffold_302945.1 124 1e-27
> Ahg918833 jgi|Araly1|918833|scaffold_100114.1
Length=1074
Score = 1607 bits (870), Expect = 0.0
Identities = 992/1052 (94%), Gaps = 3/1052 (0%)
Strand=Plus/Plus
Query 177 ATGTCAGATTCTGGTGAGCCTAAACCTTCTCAGCAAGAAGAACCTCTACCTCAACCTGCT 236
||||||||||||||||| |||||||| ||||||||||| ||| ||| |||||||||||||
Sbjct 26 ATGTCAGATTCTGGTGAACCTAAACCGTCTCAGCAAGATGAATCTCAACCTCAACCTGCT 85
Query 237 GCCCAAGAAACTCAGTCTCAACAAGTTTGCACTTTCTTCAAGAAGCCAACGAAAAGTAAA 296
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 GGGGAAGAAACTAAGTCTCAACAAGTTTGCACTTTCTTCAAGAAGCCAACGAAAAGTAAA 145
Query 297 AACATAAGAAAAAGAACCATTGACGCTGATGAAGAAGACGGAGATTCGAAAAGCGAAAGC 356
|||||||| |||||| | ||||| || ||||||||||| |||||||||||||| ||||||
Sbjct 146 AACATAAGGAAAAGAGCGATTGATGCAGATGAAGAAGATGGAGATTCGAAAAGTGAAAGC 205
Query 357 TCTATTCTACAAAATCTAAAGAAAGTTGCAAAACCCGATAGCAAGTTATACTTTTCTTCT 416
|||||| |||| ||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 206 TCTATTTTACATAATCTAAAGAAAGTTGCAAAACCCGATAGCAAGTTGTATTTTTCCTCT 265
Query 417 GGACCATCTAAGAGTTCTACTACAACGAGTGGAGCTCCTGAGAGGTCCGTCTTTCACTAC 476
|||||| ||||||| || |||| || |||| |||| ||||||| ||||||||||||||
Sbjct 266 GGACCAGCTAAGAG--CT-CTACTACTAGTGAAGCTGCTGAGAGACCCGTCTTTCACTAC 322
Query 477 GATTCATCCAAGGAAATCCAGGTTCAGAACGACAGTGGAGCAACAGCAACCCTTGAAACT 536
|||||||||||||| ||||||||||| ||||||||| |||||||||| || || ||||||
Sbjct 323 GATTCATCCAAGGAGATCCAGGTTCAAAACGACAGTAGAGCAACAGCTACTCTAGAAACT 382
Query 537 GAGACCGACTTCAATCAAGACGCACGAGCTATCCGTGAGAGAGTTCTTAAAAAAGCAGAC 596
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GAAACCGACTTCAATCAGGACGCACGAGCTATCCGTGAGAGAGTTCTTAAAAAAGCAGAC 442
Query 597 GAAGCATTGAAAGGGAATAAGAAAAAGGCTTCTGATGAGAAGCTGTACAAAGGAATTCAT 656
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 443 GAAACATTGAAAGGGAATAAGAAAAAGGCTTCAGATGAGAAGCTGTACAAAGGAATTCAT 502
Query 657 GGATATACAGATCACAAAGCTGGGTTTAGAAGAGAACAAACAATCTCGAGCGAGAAAGCT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GGATATACAGATCACAAAGCTGGGTTTAGAAGAGAACAAACAATCTCGAGCGAGAAAGCT 562
Query 717 GGAGGCTCACACGGGCCATTAAGAGCTTCTGCTCACATAAGAGTGTCGGCTAGATTCGAT 776
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 563 GGAGGCTCACACGGGCCATTAAGAGCTTCTGCTCACATCAGAGTATCGGCTAGATTCGAT 622
Query 777 TACCAGCCAGACATTTGCAAGGATTACAAAGAAACCGGATACTGTGGATATGGAGATTCG 836
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TACCAGCCAGATATTTGCAAGGATTACAAAGAAACCGGATACTGTGGATATGGAGATTCA 682
Query 837 TGTAAGTTCTTGCATGACCGTGGGGATTACAAACCAGGATGGCAGATAGAGAAAGAGTGG 896
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 683 TGTAAGTTCTTGCATGACCGTGGGGATTACAAACCGGGATGGCAAATAGAGAAAGAATGG 742
Query 897 GAAGAAGCAGAGAAAGTTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGAAGATGAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GAAGAAGCAGAGAAAGTTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGAAGATGAT 802
Query 957 GAGGCTGACAAGGATAGCGACGAAGACGAAAATGCATTGCCCTTTGCTTGCTTCATTTGC 1016
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 803 GAGGCTGACAACGATAGCGACGAAGACGAAAATGCGTTGCCCTTTGCTTGCTTCATCTGC 862
Query 1017 AGGGAGCCTTTTGTTGATCCAGTTGTCACCAAATGCAAGCATTACTTCTGTGAGCATTGT 1076
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 863 AGAGAGCCTTTCGTTGATCCAGTTGTCACCAAATGCAAGCATTACTTCTGTGAGCACTGT 922
Query 1077 GCTTTAAAGCATCACACGAAGAACAAGAAGTGCTTTGTGTGTAACCAACCAACAATGGGG 1136
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 923 GCTTTAAAGCATCACACGAAGAACAAGAAGTGTTTTGTGTGTAACCAACCAACAATGGGG 982
Query 1137 ATTTTCAATGCAGCACATGAGATCAAGAAGAGAATGGCTGAAGAACGGAGTAAAGCTGAA 1196
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 983 ATTTTCAATGCAGCACATGAGATCAAGAAGAGAATGGCTGAAGAACGTAGTAAAGCTGAA 1042
Query 1197 CAAGGATTGTGAAGTCCTTGTTTCACTGGACA 1228
|||||||||||||| ||| |||||| |||||
Sbjct 1043 GAAGGATTGTGAAGTTCTTCTTTCACAGGACA 1074
> Ahg952015 jgi|Araly1|952015|scaffold_30000002.1
Length=280
Score = 244 bits (132), Expect = 1e-63
Identities = 160/174 (92%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 783 CCAGACATTTGCAAGGATTACAAAGAAACCGGATACTGTGGATATGGAGATTCGTGTAAG 842
||||| || |||||||||||||||||||| ||||||||| ||||| ||||||| ||||||
Sbjct 66 CCAGATATATGCAAGGATTACAAAGAAACAGGATACTGTAGATATCGAGATTCTTGTAAG 125
Query 843 TTCTTGCATGACCGTGGGGATTACAAACCAGGATGGCAGATAGAGAAAGAGTGGGAAGAA 902
||||||||||||| | ||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 126 TTCTTGCATGACCATAGGGATTACAAACCGGGATGGCAGATAGAGAAAGATTGTGAAGAA 185
Query 903 GCAGAGAAAGTTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGAAGATGAT 956
| |||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 186 GTAGAGAAAGTTTGGAAGAGAAACAAAGCTATGGGAGTTGAGGATGAAGATGAT 239
> Ahg930488 jgi|Araly1|930488|scaffold_302945.1
Length=250
Score = 124 bits (67), Expect = 1e-27
Identities = 79/85 (93%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1084 AGCATCACACGAAGAACAAGAAGTGCTTTGTGTGTAACCAACCAACAATGGGGATTTTCA 1143
|||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||||||
Sbjct 158 AGCATCACACGAAGAACAAGAAGTGCTTTGTGTGCAACCAACCAACACTCGGGTTTTTCA 217
Query 1144 ATGCAGCACATGAGATCAAGAAGAG 1168
||||||| ||||| |||||||||||
Sbjct 218 ATGCAGCCCATGAAATCAAGAAGAG 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5