BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01355.1
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918832 jgi|Araly1|918832|scaffold_100113.1 599 9e-171
Ahg333932 jgi|Araly1|333932|fgenesh1_pg.C_scaffold_1000497 159 2e-38
Ahg918913 jgi|Araly1|918913|scaffold_100194.1 128 5e-29
Ahg919135 jgi|Araly1|919135|scaffold_100416.1 117 1e-25
> Ahg918832 jgi|Araly1|918832|scaffold_100113.1
Length=568
Score = 599 bits (324), Expect = 9e-171
Identities = 405/442 (92%), Gaps = 13/442 (3%)
Strand=Plus/Plus
Query 29 GGTGTCCGGTT-CCGGCTGACGTTGATGTTCGCAGGGTCGGTCCGTGTATAAAACGGGCT 87
||||||||||| || | ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 88 GGTGTCCGGTTCCCAG-TGACGTTGATGTTCGTAGGGTGGGTCCGTGTATAAAACGGGCG 146
Query 88 TTGGAGAAATTAGGCTACTCTGGTCCTCTCACCATCACTGCCGTTGGGATACTAACAGAC 147
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 147 TTGGAGAAATTAGGCTACTCTGGTCCTCTCACCATCACTGCCGTTGGCATACTAACAGAC 206
Query 148 GTCCCTCATGACTTCCTCAGACAAGTCCATTCCTCTGGAATCGCTCTTCATCACGTTCCC 207
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GTCCCGCATGACTTCCTCAGACAAGTCCATTCCTCTGGAATCGCTCTTCATCACGTTCCC 266
Query 208 ACCGTTTCCGAAACAGCTCTCTCAGGGATTGGGTGGGCTGTGGTTAAGTGGACCTGGTAT 267
|||||||| ||||||| | ||||||| |||||||||||||| |||||||||||||||||
Sbjct 267 ACCGTTTCTGAAACAGATATCTCAGGCCTTGGGTGGGCTGTGCTTAAGTGGACCTGGTAT 326
Query 268 AATCAACCTCCGGCTAATTTAATGCTCATATCGTACGAGC-ATATCTACTTG-ACCACTC 325
||||||||||||||||||||||||||||||||||| |||| | |||| |||| || ||||
Sbjct 327 AATCAACCTCCGGCTAATTTAATGCTCATATCGTATGAGCCA-ATCTTCTTGGAC-ACTC 384
Query 326 TTGACATGCTAGGTAGGATCGGATACAACACTGTTCGGTCTATTCTTCCAGATGATCCTC 385
||| |||||||||| ||||||||||||||| ||||| |||||| ||||||||||||| |
Sbjct 385 TTGGCATGCTAGGTGGGATCGGATACAACATTGTTCTGTCTATACTTCCAGATGATCTTG 444
Query 386 AACAAGCCGCATCCTCCGCCTCC-C--C-T-T-CTACAGGGTCTTTCCTCTGGGAAAGCT 439
|||||||||||||||||| |||| | | | | || |||||| |||||||||||||||||
Sbjct 445 AACAAGCCGCATCCTCCGGCTCCGCTTCCTCTTCTGCAGGGTGTTTCCTCTGGGAAAGCT 504
Query 440 TACTGGCAAGCTT-ACCAGCAG 460
||||||||||||| ||||||||
Sbjct 505 TACTGGCAAGCTTTACCAGCAG 526
> Ahg333932 jgi|Araly1|333932|fgenesh1_pg.C_scaffold_1000497
Length=636
Score = 159 bits (86), Expect = 2e-38
Identities = 154/185 (83%), Gaps = 12/185 (6%)
Strand=Plus/Plus
Query 29 GGTGTCCGGTTCCGGCTGACGTTGATGTTCG-CAGGGTCGGTCCGTGTATAAAACGGGCT 87
||||||||||||| ||| | |||||| ||| | |||||||||||||||| | |||| |
Sbjct 53 GGTGTCCGGTTCCCACTGGCTTTGATGCTCGTC-GGGTCGGTCCGTGTATCAGACGGT-T 110
Query 88 -TTGGAGAAATTAGGCTACTCTGGTCCTCTCACCATCACTGCCGTTGGGATACTAACAGA 146
|||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct 111 ATTGGAGAATTTAGGCTACACTGGTCCTCTCACCATCACTGCCGTTGGCATACTGACAGA 170
Query 147 CGTCC-CTCATGACTTCCT-C-AGACAAGTC-CATTCCTCTGGAATCGCTCTTCATCACG 202
|| || || ||||||| || | || || || | |||| |||||||| ||||| ||||||
Sbjct 171 CG-CCTCTGATGACTTTCTGCGAGCCA--TCAC-TTCCACTGGAATCACTCTTGATCACG 226
Query 203 TTCCC 207
| |||
Sbjct 227 TCCCC 231
> Ahg918913 jgi|Araly1|918913|scaffold_100194.1
Length=1219
Score = 128 bits (69), Expect = 5e-29
Identities = 114/135 (84%), Gaps = 6/135 (4%)
Strand=Plus/Plus
Query 64 GTCGGTCCGTGTATAAAACGGGCTTTGGAGAAAT-TAGGCTACTCTGGTCCTCTCACCAT 122
|||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 843 GTCGGTCCGTGTATTAAACGGTTTTTGGAG-AATAAAGGCTACTCTGGTCCTCTCACCAT 901
Query 123 CACTGCCGTTGG-GATACTA-ACAGACGTCCCTCATGACTTCCTCAGACAAGTCCATTCC 180
||||||| | || | |||| | |||||||||| ||||| |||| ||| |||||||||
Sbjct 902 CACTGCCATGGGCGC-ACTAGA-AGACGTCCCTTATGACATCCTGAGAGGAGTCCATTCA 959
Query 181 TCTGGAATCGCTCTT 195
|||||||||||||
Sbjct 960 AGTGGAATCGCTCTT 974
> Ahg919135 jgi|Araly1|919135|scaffold_100416.1
Length=1647
Score = 117 bits (63), Expect = 1e-25
Identities = 113/136 (83%), Gaps = 8/136 (6%)
Strand=Plus/Plus
Query 64 GTCGGTCCGTGTATAAAACGGGCTTTGGAGAAAT-TAGGCTACTCTGGTCCTCTCACCAT 122
|||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 1025 GTCGGTCCGTGTATTAAACGGTTTTTGGAG-AATAAAGGCTACTCTGGTCCTCTCACCAT 1083
Query 123 CACTGCCGTTGG-GATACTA-ACAGACGTCCCTCATGACTTCCTCAGAC-AAGTCCATTC 179
||||||| | || | |||| | |||||||||| ||||| |||| ||| || || ||||
Sbjct 1084 CACTGCCATGGGCGC-ACTAGA-AGACGTCCCTAATGACATCCTGAGAGGAA-TCTATTC 1140
Query 180 CTCTGGAATCGCTCTT 195
| ||||||| |||||
Sbjct 1141 CAGTGGAATCTCTCTT 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25237371054
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5