BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01360.1
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909840 jgi|Araly1|909840|Al_scaffold_0001_94 904 0.0
Ahg914276 jgi|Araly1|914276|Al_scaffold_0001_4530 676 0.0
Ahg943647 jgi|Araly1|943647|scaffold_604191.1 488 3e-137
> Ahg909840 jgi|Araly1|909840|Al_scaffold_0001_94
Length=573
Score = 904 bits (489), Expect = 0.0
Identities = 545/573 (95%), Gaps = 0/573 (0%)
Strand=Plus/Plus
Query 168 ATGATGGACGGCGTTGAAGGCGGCACGGCGATGTACGGTGGTCTCGAGACGGTGCAATAC 227
|||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1 ATGATGGACGGCGTTGGAGGCGGCACGGCGATGTACGGAGGTCTCGAGACGATGCAATAC 60
Query 228 GTACGGACGCATCATCAACATCTGTGCAGAGAAAACCAGTGTACCTCTGCTCTTGTCAAA 287
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GTACGGACGCATCATCAACATCACTGCAGAGAAAACCAGTGTACCTCTGCTCTTGTCAAA 120
Query 288 CACATCAAAGCTCCTCTTCATCTCGTTTGGTCACTTGTACGGAGATTTGATCAGCCGCAG 347
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CACATCAAAGCTCCTGTTCATCTCGTTTGGTCACTTGTGCGGAGATTTGATCAGCCGCAG 180
Query 348 AAATACAAACCGTTTGTGAGCAGATGTACAGTAATCGGTGATCCTGAAATCGGCAGTCTT 407
||||||||||| |||||||| ||||| | |||||||||||||||||||||||| ||||||
Sbjct 181 AAATACAAACCATTTGTGAGTAGATGCAGAGTAATCGGTGATCCTGAAATCGGGAGTCTT 240
Query 408 AGAGAAGTCAATGTTAAATCTGGTCTTCCTGCAACAACATCTACTGAGAGATTAGAACTT 467
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 AGAGAAGTCAATGTTAAATCTGGTCTTCCTGCAACAACAAGTACTGAGAGATTAGAACTT 300
Query 468 CTTGATGATGAAGAACACATCCTCGGTATCAAAATCATCGGTGGTGATCACAGACTTAAG 527
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTGATGATGAAGAACATATCCTCGGTATCAAAATCATCGGTGGTGATCACAGACTTAAG 360
Query 528 AATTACTCGTCGATTTTGACGGTTCATCCGGAGATAATCGAGGGAAGAGCAGGAACGATG 587
||||||||||||||| |||| || |||||||||||||||||||||||||| ||||| |||
Sbjct 361 AATTACTCGTCGATTGTGACTGTGCATCCGGAGATAATCGAGGGAAGAGCTGGAACAATG 420
Query 588 GTGATTGAATCGTTTGTAGTTGATGTTCCTCAAGGTAACACAAAGGATGAGACTTGCTAC 647
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 421 GTGATTGAATCGTTTGTAGTTGATGTTCCTGAAGGTAACACAAAGGAAGAGACTTGCTAC 480
Query 648 TTTGTTGAAGCACTTATCAGATGTAATCTCAAGTCACTAGCAGATGTTTCTGAAAGATTG 707
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 TTTGTTGAAGTACTTATCAGATGTAATCTCAAGTCATTAGCAGATGTTTCTGAAAGATTG 540
Query 708 GCTTCTCAGGACATTACTCAGTGAACTACATAA 740
|||||||||||||| ||||| | |||||||||
Sbjct 541 GCTTCTCAGGACATAACTCAATTCACTACATAA 573
> Ahg914276 jgi|Araly1|914276|Al_scaffold_0001_4530
Length=522
Score = 676 bits (366), Expect = 0.0
Identities = 416/439 (95%), Gaps = 7/439 (2%)
Strand=Plus/Plus
Query 312 GTTTGGTCACTTGTACGGAGATTTGATCAGCCGCAGAAATACAAACCGTTTGTGAGCAGA 371
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 88 GTTTGGTCACTTGTACGGAGATTTGACCAGCCGCAGAAATACAAACCATTTGTGAGCAGA 147
Query 372 TGTACAGTAATCGGTGATCCTGAAATCGGCAGTCTTAGAGAAGTCAATGTTAAATCTGGT 431
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 148 TGTACAGTAATTGGTGATCCTGAAATCGGTAGTCTTAGAGAAGTCAATGTTAAATCTGGT 207
Query 432 CTTCCTGCAACAACATCTACTGAGAGATTAGAACTTCTTGATGATGAAGAACACATCCTC 491
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 208 CTTCCTGCAACAACAAGTACTGAGAGATTAGAACTTCTTGATGATGAAGAACATATCCTC 267
Query 492 GGTATCAAAATCATCGGTGGTGATCACAGACTTAAGAATTACTCGTCGATT-TTGACGGT 550
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 268 TGTATCAAAATCATCGGTGGTGATCACAGACTTAAGAATTACTCGTCGATTGTT-ACTGT 326
Query 551 TCATCCGGAGATAATCGAGGGAAGAGCAGGAACGATGGTGATTGAATCGTTTGTAGTTGA 610
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 327 TCATCCGGAGATAATCGAGGGAAGAGTAGGAACAATGGTGATTGAATCGTTTGTAGTTGA 386
Query 611 TGTTCCTCAAGGTAACACAAAGGATGAGACTTGCTACTTTGTTGAAGCACTTATCAGATG 670
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TGTTCCTGAAGGTAACACAAAGGATGAGACTTGCTACTTTGTTGAAGCACTTATCAGATG 446
Query 671 TAATCTCAAGTCACTAGCAGATGTTTCTGAAAGATTGGCTTCTCAGGACATTA-CTCAGT 729
||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |||| |
Sbjct 447 TAATCTCAAGTCATTAGCAGATGTTTATGAAAGATTGGCTTCTCAGGAC-TTAACTCAAT 505
Query 730 -GAACTACATAATCAATGA 747
| |||||| ||||||||
Sbjct 506 CG--CTACATTATCAATGA 522
> Ahg943647 jgi|Araly1|943647|scaffold_604191.1
Length=672
Score = 488 bits (264), Expect = 3e-137
Identities = 422/497 (85%), Gaps = 16/497 (3%)
Strand=Plus/Plus
Query 236 GCATCATCAACATC-TGTGCAGAGAAAACCAGTGTACCTCTGCTCTTGTCAAACACATCA 294
|||||||| || | | |||||||| |||||||||||||||| ||| |||||| ||||||
Sbjct 90 GCATCATCGTCACCAT-TGCAGAGAGAACCAGTGTACCTCTGTTCTCGTCAAATACATCA 148
Query 295 AAGCTCCTCTTCATCTCGTTTGGTCACTTGTACGGAGATTTGATCAGCCGCAGAAATACA 354
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 149 AAGCTCCTGTTCATCTCGTTTGGTCACTTGTGCGGAGATTTGATCAGCCGCAGAAATACA 208
Query 355 AACCGTTTGTGAGCAGATGTACAG-TAATCGGTGATCCTGAAATCGGCAGTCTTAGAGAA 413
|||| ||| | |||||||| || | |||| ||||||||||| || || |||| ||||||
Sbjct 209 AACCATTTATAAGCAGATGCACTGTTAAT-GGTGATCCTGAGATTGGTTGTCTCAGAGAA 267
Query 414 GTCAATGTTAAATCTGGTCTTCCTGCAAC-AACATCTACTGAGAGATTAGAACTTCTTGA 472
|| ||||| ||||||||||||||||| || | || ||| |||||||| |||| |||||
Sbjct 268 GTTAATGTCAAATCTGGTCTTCCTGCGACTACCA-GTACCGAGAGATTGGAACAGCTTGA 326
Query 473 TGATGAAGAACACATCCTCGGTATCAAAATCATCGGTGGTGATCACAGACTTAAGAATTA 532
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 327 TGATGAAGAACACATTCTCGGTATCAACATCATTGGTGGTGATCACAGACTTAAGAATTA 386
Query 533 CTCGTCGATTTTGACGGTTCATCCGGAGATAATCGA-GGGAAGAGCAGGAACGATGGTGA 591
||||||||| ||||| || ||||| ||||| ||||| |||| | ||||||| |||||||
Sbjct 387 CTCGTCGATCTTGACTGTACATCCAGAGATGATCGATGGGAGGT-CAGGAACTATGGTGA 445
Query 592 TTGAATCGTTTGTAGTTGATGTTCCTCAAGGTAACAC-AAAGGATGAGACTTGCTACTTT 650
|||| || ||||| || |||||||| ||||| ||||| |||| |||| || || |||||
Sbjct 446 TTGAGTCTTTTGTTGTGGATGTTCCCCAAGGCAACACCAAAG-ATGATACATGTTACTTC 504
Query 651 GTTGAAGCACTTATCA-GATGTAATCTCAAGTCACTAG-CA-GATGTTTCTGAAAGATTG 707
|| ||| |||| || | | ||||| ||||| || || | | | ||| ||||||||||||
Sbjct 505 GTGGAATCACTCATAAAG-TGTAACCTCAAATC-CTTGGCTTG-TGTCTCTGAAAGATTG 561
Query 708 GCTTCTCAGGACATTAC 724
||| |||||||||||||
Sbjct 562 GCTGCTCAGGACATTAC 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37169844075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5