BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01370.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923625 jgi|Araly1|923625|scaffold_104906.1 710 0.0
Ahg909839 jgi|Araly1|909839|Al_scaffold_0001_93 490 8e-138
> Ahg923625 jgi|Araly1|923625|scaffold_104906.1
Length=569
Score = 710 bits (384), Expect = 0.0
Identities = 517/580 (89%), Gaps = 14/580 (2%)
Strand=Plus/Plus
Query 102 ATTTCT-CAGCAGTAAAAATCAATGGCGAGAACCAAGCATCGCGTTACCAGGTCACAACC 160
|||||| ||||||| ||| ||||||||||||||||||| |||||||||| | | |
Sbjct 3 ATTTCTCCAGCAGT---AATTAATGGCGAGAACCAAGCATTTCGTTACCAGGAAAGGATC 59
Query 161 TCGGAATCAAACTGATGCCGCCGGTGCTTCATCTTCTCAGGCGGCAGGTCCAACTACGAC 220
| |||||| |||||||||| | | ||||||||||||| ||||||||||| || | |||
Sbjct 60 TGGGAATCGAACTGATGCCAATGCTTCTTCATCTTCTCAAGCGGCAGGTCCGACGAAGAC 119
Query 221 CCCGACAAGGAGAGGCGGTGAAGGTGGAGATAATACTCAACAAACAAATCCTACAACTTC 280
||||||| |||||| ||||||||||||||||||| | ||| || ||||||||
Sbjct 120 ACCGACAACAAGAGGCACTGAAGGTGGAGATAATACT---C-AAC-AA----ACAACTTC 170
Query 281 ACCAGCTACTGGTACAAGGAGAGGGGCTAAGAGATCCAGACAGGCTATGCCACGAGGCTC 340
||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||| ||
Sbjct 171 ACCAGCTACTGGTGGAAGGAGAGGGCCTAGGAGAGCCAGACAGGCTATGCCACGAGGTTC 230
Query 341 ACAGAAGAAGTCTTATCGATACAGGCCAGGAACCGTTGCTCTAAAAGAGATTCGCCATTT 400
|||||||||| ||||| |||||| ||||||||| |||||||| | ||||||||| |||||
Sbjct 231 ACAGAAGAAGCCTTATAGATACAAGCCAGGAACAGTTGCTCTGAGAGAGATTCGACATTT 290
Query 401 CCAGAAGCAGACAAACCTTCTTATTCCGGCTGCCAGTTTCATAAGAGAAGTGAGAAGTAT 460
||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||
Sbjct 291 CCAGAAGCAGACAAACCTTCTTATTCCAGCTGCTAGCTTCATAAGACAAGTGAGAAGTAT 350
Query 461 AACCCATATGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTTGCTCT 520
||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 351 AACTCATGCGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCT 410
Query 521 TCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTAT 580
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 411 TCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCCGATTCAATGCTCTGTGCTAT 470
Query 581 CCATGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAACTTGCACGCCGGCTTGGAGG 640
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 471 CCATGCAAGACGTGTTACGCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGG 530
Query 641 AAAAGGCAGACCATGGTGATAGAAAACTCACTCACTATTC 680
||||||||||||||||||||||||| ||||||| ||||||
Sbjct 531 AAAAGGCAGACCATGGTGATAGAAA-CTCACTCCCTATTC 569
> Ahg909839 jgi|Araly1|909839|Al_scaffold_0001_93
Length=546
Score = 490 bits (265), Expect = 8e-138
Identities = 299/316 (95%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 344 GAAGAAGTCTTATCGATACAGGCCAGGAACCGTTGCTCTAAAAGAGATTCGCCATTTCCA 403
||| ||| |||||||||||| |||||||||||||||||| | ||||||||| ||||||||
Sbjct 231 GAATAAGCCTTATCGATACAAGCCAGGAACCGTTGCTCTGAGAGAGATTCGACATTTCCA 290
Query 404 GAAGCAGACAAACCTTCTTATTCCGGCTGCCAGTTTCATAAGAGAAGTGAGAAGTATAAC 463
|||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||
Sbjct 291 GAAGCAGACAAACCTTCTTATTCCAGCTGCTAGCTTCATAAGACAAGTGAGAAGTATAAC 350
Query 464 CCATATGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTTGCTCTTCA 523
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 351 TCATGCGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCA 410
Query 524 AGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCA 583
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 411 AGAGGCTGCAGAAGATTACTTGGTTGGATTGTTCTCAGATTCAATGCTCTGTGCTATCCA 470
Query 584 TGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAACTTGCACGCCGGCTTGGAGGAAA 643
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 471 TGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAA 530
Query 644 AGGCAGACCATGGTGA 659
||||||||||||||||
Sbjct 531 AGGCAGACCATGGTGA 546
Score = 165 bits (89), Expect = 5e-40
Identities = 107/116 (92%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 185 TGCTTCATCTTCTCAGGCGGCAGGTCCAACTACGACCCCGACAAGGAGAGGCGGTGAAGG 244
||||||||||||||| ||||||||||| || ||||||||||||| |||||| ||||||
Sbjct 117 TGCTTCATCTTCTCAAGCGGCAGGTCCGACGACGACCCCGACAACAAGAGGCACTGAAGG 176
Query 245 TGGAGATAATACTCAACAAACAAATCCTACAACTTCACCAGCTACTGGTACAAGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 177 TGGAGATAATACTCAACAAACAAATCCTACAACTTCACCAGCTACTGGTGGAAGGA 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5