BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01370.1 Length=909 Score E Sequences producing significant alignments: (Bits) Value Ahg923625 jgi|Araly1|923625|scaffold_104906.1 710 0.0 Ahg909839 jgi|Araly1|909839|Al_scaffold_0001_93 490 8e-138 > Ahg923625 jgi|Araly1|923625|scaffold_104906.1 Length=569 Score = 710 bits (384), Expect = 0.0 Identities = 517/580 (89%), Gaps = 14/580 (2%) Strand=Plus/Plus Query 102 ATTTCT-CAGCAGTAAAAATCAATGGCGAGAACCAAGCATCGCGTTACCAGGTCACAACC 160 |||||| ||||||| ||| ||||||||||||||||||| |||||||||| | | | Sbjct 3 ATTTCTCCAGCAGT---AATTAATGGCGAGAACCAAGCATTTCGTTACCAGGAAAGGATC 59 Query 161 TCGGAATCAAACTGATGCCGCCGGTGCTTCATCTTCTCAGGCGGCAGGTCCAACTACGAC 220 | |||||| |||||||||| | | ||||||||||||| ||||||||||| || | ||| Sbjct 60 TGGGAATCGAACTGATGCCAATGCTTCTTCATCTTCTCAAGCGGCAGGTCCGACGAAGAC 119 Query 221 CCCGACAAGGAGAGGCGGTGAAGGTGGAGATAATACTCAACAAACAAATCCTACAACTTC 280 ||||||| |||||| ||||||||||||||||||| | ||| || |||||||| Sbjct 120 ACCGACAACAAGAGGCACTGAAGGTGGAGATAATACT---C-AAC-AA----ACAACTTC 170 Query 281 ACCAGCTACTGGTACAAGGAGAGGGGCTAAGAGATCCAGACAGGCTATGCCACGAGGCTC 340 ||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||| || Sbjct 171 ACCAGCTACTGGTGGAAGGAGAGGGCCTAGGAGAGCCAGACAGGCTATGCCACGAGGTTC 230 Query 341 ACAGAAGAAGTCTTATCGATACAGGCCAGGAACCGTTGCTCTAAAAGAGATTCGCCATTT 400 |||||||||| ||||| |||||| ||||||||| |||||||| | ||||||||| ||||| Sbjct 231 ACAGAAGAAGCCTTATAGATACAAGCCAGGAACAGTTGCTCTGAGAGAGATTCGACATTT 290 Query 401 CCAGAAGCAGACAAACCTTCTTATTCCGGCTGCCAGTTTCATAAGAGAAGTGAGAAGTAT 460 ||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||| Sbjct 291 CCAGAAGCAGACAAACCTTCTTATTCCAGCTGCTAGCTTCATAAGACAAGTGAGAAGTAT 350 Query 461 AACCCATATGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTTGCTCT 520 ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 351 AACTCATGCGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCT 410 Query 521 TCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTAT 580 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 411 TCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCCGATTCAATGCTCTGTGCTAT 470 Query 581 CCATGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAACTTGCACGCCGGCTTGGAGG 640 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 471 CCATGCAAGACGTGTTACGCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGG 530 Query 641 AAAAGGCAGACCATGGTGATAGAAAACTCACTCACTATTC 680 ||||||||||||||||||||||||| ||||||| |||||| Sbjct 531 AAAAGGCAGACCATGGTGATAGAAA-CTCACTCCCTATTC 569 > Ahg909839 jgi|Araly1|909839|Al_scaffold_0001_93 Length=546 Score = 490 bits (265), Expect = 8e-138 Identities = 299/316 (95%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 344 GAAGAAGTCTTATCGATACAGGCCAGGAACCGTTGCTCTAAAAGAGATTCGCCATTTCCA 403 ||| ||| |||||||||||| |||||||||||||||||| | ||||||||| |||||||| Sbjct 231 GAATAAGCCTTATCGATACAAGCCAGGAACCGTTGCTCTGAGAGAGATTCGACATTTCCA 290 Query 404 GAAGCAGACAAACCTTCTTATTCCGGCTGCCAGTTTCATAAGAGAAGTGAGAAGTATAAC 463 |||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||| Sbjct 291 GAAGCAGACAAACCTTCTTATTCCAGCTGCTAGCTTCATAAGACAAGTGAGAAGTATAAC 350 Query 464 CCATATGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTTGCTCTTCA 523 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 351 TCATGCGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCA 410 Query 524 AGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCA 583 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 411 AGAGGCTGCAGAAGATTACTTGGTTGGATTGTTCTCAGATTCAATGCTCTGTGCTATCCA 470 Query 584 TGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAACTTGCACGCCGGCTTGGAGGAAA 643 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 471 TGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAA 530 Query 644 AGGCAGACCATGGTGA 659 |||||||||||||||| Sbjct 531 AGGCAGACCATGGTGA 546 Score = 165 bits (89), Expect = 5e-40 Identities = 107/116 (92%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 185 TGCTTCATCTTCTCAGGCGGCAGGTCCAACTACGACCCCGACAAGGAGAGGCGGTGAAGG 244 ||||||||||||||| ||||||||||| || ||||||||||||| |||||| |||||| Sbjct 117 TGCTTCATCTTCTCAAGCGGCAGGTCCGACGACGACCCCGACAACAAGAGGCACTGAAGG 176 Query 245 TGGAGATAATACTCAACAAACAAATCCTACAACTTCACCAGCTACTGGTACAAGGA 300 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 177 TGGAGATAATACTCAACAAACAAATCCTACAACTTCACCAGCTACTGGTGGAAGGA 232 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33700658628 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5