BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01380.1
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909838 jgi|Araly1|909838|Al_scaffold_0001_92 438 2e-122
> Ahg909838 jgi|Araly1|909838|Al_scaffold_0001_92
Length=252
Score = 438 bits (237), Expect = 2e-122
Identities = 247/252 (98%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 115 ATGAATACGCAGCGTAAGTCGAAGCATCTTAAGACCAATCCAACCATTGTTGCCTCTTCT 174
||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1 ATGGATACGCAGCGTAAGTCGAAGCATCTCAAGACCAATCCAACCACTGTTGCCTCTTCT 60
Query 175 TCTGAAGAAGTGAGCAGTCTTGAGTGGGAAGAAATAGCAATGGCTCAGGAAGAAGAGGAT 234
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCTGAAGAAGTGAGCAGTCTTGAGTGGGAAGAAATAGCAATGGCTCAAGAAGAAGAGGAT 120
Query 235 TTGATTTGCAGGATGTATAAGCTTGTCGGTGAAAGGTGGGATTTAATAGCTGGGAGGATT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGATTTGCAGGATGTATAAGCTTGTCGGTGAAAGGTGGGATTTAATAGCTGGGAGGATT 180
Query 295 CCAGGAAGAACAGCAGAAGAGATTGAGAGGTTTTGGGTGATGAAGAATCATCGAAGATCT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CCAGGAAGAACAGCAGAAGAGATTGAGAGGTTTTGGGTGATGAAGAATCATCGGAGATCT 240
Query 355 CAATTACGTTGA 366
||||||||||||
Sbjct 241 CAATTACGTTGA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20756640416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5