BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01400.1

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg333518 jgi|Araly1|333518|fgenesh1_pg.C_scaffold_1000083           167    2e-40


> Ahg333518 jgi|Araly1|333518|fgenesh1_pg.C_scaffold_1000083
Length=966

 Score =  167 bits (90),  Expect = 2e-40
 Identities = 127/144 (88%), Gaps = 5/144 (3%)
 Strand=Plus/Plus

Query  388  ACCGGGCTCTGC-CTTCCCAAGACAT--AA-AAGACTACCAGTTTTCGATGAGGTTTGCT  443
            |||||||||||| | |  ||||| ||  || |||||| ||||||||| | ||| ||||||
Sbjct  453  ACCGGGCTCTGCTCAT-ACAAGATATAGAATAAGACTGCCAGTTTTCAAAGAGCTTTGCT  511

Query  444  CGGGTGCGGTGTTTCCATGGTATGGACCGCAAGAACCAGACTTGCCTTCTTCATCTGGAA  503
            |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  512  CGGGTGTGGAGTTTCAATGGTATGGACCGCAAGAACCAGACTTGCCTTCTTCATCTGGAA  571

Query  504  TAGGAACCATGTCAGCAAACAGTC  527
             ||||||||| |||||||||||||
Sbjct  572  AAGGAACCATCTCAGCAAACAGTC  595


 Score =  163 bits (88),  Expect = 2e-39
 Identities = 123/140 (88%), Gaps = 2/140 (1%)
 Strand=Plus/Plus

Query  530  GATGATCGTCGCGCCTA-TGAATTAGCTTATCCTTTACCAAGCAGAGATATACAAAGCAA  588
            |||||| ||||| || | |||| |||||||||||  || ||||| ||| | |||||| ||
Sbjct  697  GATGATAGTCGCACC-AGTGAAGTAGCTTATCCTAAACTAAGCATAGAAAGACAAAGGAA  755

Query  589  AAAGGAGCTGAGGAATGCTCACCTCAAAACTCCCACAGCCACTCTCACCAACACTACTAC  648
            |||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  756  AAAGGATCTGAGGAGTGCTCACCTCAAAACTCCCACAGCCACTCACAGCAACACTACTAC  815

Query  649  CACAACCATCCATGGCTCCA  668
            |||||||| |||||||||||
Sbjct  816  CACAACCACCCATGGCTCCA  835



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42697667040


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5