BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01410.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470139 jgi|Araly1|470139|fgenesh2_kg.1__93__AT1G01410.1 1048 0.0
> Ahg470139 jgi|Araly1|470139|fgenesh2_kg.1__93__AT1G01410.1
Length=1056
Score = 1048 bits (567), Expect = 0.0
Identities = 677/732 (92%), Gaps = 0/732 (0%)
Strand=Plus/Plus
Query 355 GATGTTGATAAGCTCCATAAGCTTGCCTCGAAGCTAATGTTAGATTCTGATCTCTTTTTC 414
|||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 325 GATGATGATCAGCTCCATAAGCTTGCCTCGAAGCTTATGTTAGATTCTGATCTCTTTTTC 384
Query 415 GAGTTTGTCATAACAAGACGAGGCTCGCTCATGATTCAAATTATCCTAGGAAAATCCGAA 474
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 385 GAGTTTGTCACAACAAGACGAGGCTCGCTCATGATTCAGATTATCCTAGGAAAATCCGAA 444
Query 475 GAAGTCGACCAAGTTATTTTGGCGGGAGTGAAGCAAAGGTTCATCGATGTTACAACAAAC 534
||| ||||| ||||| ||||||| | |||||||||||||||||||||||| ||||| ||
Sbjct 445 GAAATCGACAAAGTTCTTTTGGCAGCAGTGAAGCAAAGGTTCATCGATGTCACAACCGAC 504
Query 535 TTTTACGGGTATCGCATCATGATACAAACCATAAAAGTTTTCAAGAAAAGAGGTGATTTG 594
|||||||| |||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 505 TTTTACGGTTATCGCATCATGATACGAACCATAAACGCTTTCAAGAAAAGAGGTGATTTG 564
Query 595 AAAGTGTACGACCAAATCCTACGCCTAATCGGAGTCCACGCTCTCTACCTAACAAAGGAC 654
|||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 565 AAAGTGTATGATCAAATCCTACGCCTAATAGGAGTCCACGCACTCTACCTAACAAAGGAC 624
Query 655 CCTGATATGGGAAACAAGACGTTTCAACACGCTATTAATCTACACCACCAGGATTGTACG 714
| |||| |||||||| ||| |||||| || ||||||||||||||||| |||||||||
Sbjct 625 CTTGATGTGGGAAACTCCACGGTTCAACGGGCCATTAATCTACACCACCAAGATTGTACG 684
Query 715 ACATTCATCGCGTGTGGGCTTCAAAGCCACTACATTGAGCTTTCGTTTCTGAAACATGGA 774
|||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 685 ACATTCATCGCGTGTGGGCTTCAATGTCACTACATAGAGCTTTCGTTTCTGAAACATGGA 744
Query 775 AGCAAAATTGTGGAGATGCTTATCGATGACCGTATTTCGATGGTGCCTTTGGTTCTACTC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 745 AGCAAAATTGTGGAGATGCTTATCGATGACCGTATTTCGATGGTGCCTTTGGTTCTAATC 804
Query 835 ATGATGGAGATTGTCAAGTGTGATGAAGATACGTTGGTGAGATTGGCTACTGATGAATAT 894
||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 805 ATGATAGAGATTGTCAAATGTGATGAAGATACGTTGGTGAGATTGGCTAATAATGAATAT 864
Query 895 GGGAATAACATTTTGAAAAAGTTTCTGGCACTTGCCAAAGAGCATAAGGAAGATTTCTTT 954
|| |||||||||||||||||| ||||| |||||| |||||||||| || |||||||||
Sbjct 865 GGAAATAACATTTTGAAAAAGACTCTGGAACTTGCGAAAGAGCATAGGGCTGATTTCTTT 924
Query 955 GGTGATCTTGTTGACAAGTTGAATCCTTTACTCGATAGTTTGCGCGGGACTCTCGGAGAA 1014
|||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 925 GGTGATCTTGTTGACAAGCTGAATCCTTTACTTGATAGCTTGCGCGGGTCTCTCGGAGAA 984
Query 1015 AACATTGTAGCAATCATCGACTCAGAAACAGAGATGGTTAAGGATCGAATTGTTTCACAA 1074
||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 985 AACATTGTAGCTATCATCGACTCAGAGACAGAGACGGTGAAGGATCGAATTGTTTCACAA 1044
Query 1075 GGAAATAATTAG 1086
||||||||||||
Sbjct 1045 GGAAATAATTAG 1056
Score = 558 bits (302), Expect = 2e-158
Identities = 320/329 (97%), Gaps = 0/329 (0%)
Strand=Plus/Plus
Query 1 ATGACTCATGAACGCGGCTATGATTTGGCGTCACAAGTACTAAACATTTGCAACGTACAT 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGACTCATGAACGCGGCTATGATTTGGCGTCACAAGTACTAAACGTTTGCAACGTACAT 60
Query 61 CACAAGAAACTGTTTTGCCATATCACGTACCGTCACTTGTTGGTCTTGTCGAGTGACGAT 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACAAGAAACTCTTTTGCCATATCACGTACCGTCACTTGTTGGTCTTGTCGAGTGACGAA 120
Query 121 AACGGTTGCGTCATACTCAAGAAAGTTATAACAATAGCTGATGATTTCTTGAAAGATGAA 180
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 AACGGTTGCATCGTACTCAAGAAAGTTATAACAATAGCTGATGATTTCTGGAAAGATGAA 180
Query 181 TTCCTTGACCTAATCGCACAGCACGCTCACTCGCTAAGCATGCACGACTTAGGAATCTCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCTTGACCTAATCGCACAGCACGCTCACTCGCTAAGCATGCACGACTTAGGAATCTCC 240
Query 241 CTAATCCAGCACGTGCTTGAGCTTGATTTTACAAAGAAAACCACACAAGACGACAAGCGC 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 CTAATCCAACACGTGCTTGAGCTTGATTTTACAAAGAAAACCACACAAGACGACGCGCGC 300
Query 301 TTGCACGAGCTAATGGCTGAGTTTGATGA 329
|||||||||||||||||||||||||||||
Sbjct 301 TTGCACGAGCTAATGGCTGAGTTTGATGA 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5