BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01420.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470138 jgi|Araly1|470138|fgenesh2_kg.1__92__AT1G01420.1 1814 0.0
Ahg470140 jgi|Araly1|470140|fgenesh2_kg.1__94__AT1G01390.1 1435 0.0
Ahg490463 jgi|Araly1|490463|fgenesh2_kg.6__3597__AT4G01070.1 773 0.0
> Ahg470138 jgi|Araly1|470138|fgenesh2_kg.1__92__AT1G01420.1
Length=1440
Score = 1814 bits (982), Expect = 0.0
Identities = 1124/1194 (94%), Gaps = 4/1194 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGATGGAAACACTCCACATGTAGCAATCATACCAAGTCCCGGTATAGGTCACCTC 60
|||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGAAGCAAACAGTTCACATGTAGCAATCATACCAAGTCCCGGTATAGGTCACCTC 60
Query 61 ATCCCACTCGTCGAGTTAGCAAAGCGACTCCTTGACAATCACGGTTTCACCGTCACTTTC 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 ATCCCACTCGTCGAGTTAGCAAAGCGACTCGTTGACAATCACGGTTTCACCGTCACTTTC 120
Query 121 ATCATCCCCGGCGATTCTCCTCCGTCTAAGGCTCAAAGATCCGTTCTCAACTCTCTCCCT 180
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GTCATCCCCGGCGATTCTCCTCCGTCTAAGGCTCAAAGCTCCGTTCTCAACTCTCTCCCT 180
Query 181 TCCTCCATAGCCTCCGTCTTCCTCCCTCCCGCCGATCTTTCCGACGTTCCTTCGACAGCT 240
||||||||||||||| |||||||||||||||||||||||||||||||||| || || |||
Sbjct 181 TCCTCCATAGCCTCCTTCTTCCTCCCTCCCGCCGATCTTTCCGACGTTCCATCAACGGCT 240
Query 241 CGAATCGAAACTCGGATATCGCTCACCGTGACTCGTTCCAACCCGGCGCTCCGGGAGCTT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 CGAATCGAAACTCGGATATCGCTCACTGTGACTCGTTCCAACCCGGCGCTCCGGGAGCTT 300
Query 301 TTTGGCTCGTTATCGGCGGAGAAACGTCTCCCGGCGGTTCTCGTCGTCGATCTATTTGGT 360
||| ||||||||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 301 TTTCGCTCGTTATCGGCGGAGAAACGTCTCCAGGTGGTTCTCGTCGTCGATATATTTGGT 360
Query 361 ACGGATGCGTTCGACGTGGCTGCTGAGTTCCACGTGTCGCCATACATTTTCTATGCATCA 420
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 ACGGATGCGTTCGACGTGGCTATTGAGTTCCACGTGTCGCCATACATTTTCTATGCATCA 420
Query 421 AATGCCAACGTCCTCACGTTTCTGCTTCACTTGCCGAA-GCTAGACGAAACGGTGTCGTG 479
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 421 AATGCCAACGTCCTCACGTTTCTGCTTCACTTGCC-AATGCTAGACGAAACGGTGTCGTG 479
Query 480 TGAGTTTAGGGAATTAACCGAACCGGTTATTATTCCCGGTTGTGTCCCCATAACCGGTAA 539
|||||||||||| |||| |||||||||||| |||||||||||| |||| |||||||||||
Sbjct 480 TGAGTTTAGGGACTTAATCGAACCGGTTATGATTCCCGGTTGTATCCCTATAACCGGTAA 539
Query 540 GGATTTCGTCGATCCGTGTCAAGACCGAAAAGATGAATCATACAAATGGCTTCTACACAA 599
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 540 AGATTTCGTCGATCCGTGTCAAGACCGAAACGATGACTCATACAAATGGCTTCTCCACAA 599
Query 600 CGTCAAGAGATTCAAAGAAGCTGAAGGGATTCTAGTGAATTCCTTCGTCGATTTAGAGCC 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 CGTCAAGAGATTCAAAGAAGCTGAAGGGATTCTAGTGAATTCCTTCATCGATTTAGAGCC 659
Query 660 AAACACTATAAAGATTGTACAAGAACCGGCTCCTGATAAACCACCGGTTTACCTGATTGG 719
||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 660 TAACACTATAAAGATTTTACAAGAACCTGCTCCTGATAAACCACCGGTTTACCCAATTGG 719
Query 720 GCCGTTGGTTAACTCGGGTTCACACGATGCTGACGTGAACGATGAGTACAAATGTTTAAA 779
||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||
Sbjct 720 CCCGTTGGTTAACTCGGGTTCATACGATGCTAACGTGCACGATGAGTACAAGTGTTTAAA 779
Query 780 TTGGCTAGACAACCAACCATTCGGGTCGGTTCTATACGTATCCTTTGGAAGCGGCGGAAC 839
||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 780 TTGGCTAGACAGCCAACCATTCGGCTCGGTTCAATACGTATCATTTGGAAGCGGCGGAAC 839
Query 840 ACTCACGTTTGAGCAGTTCATTGAGCTGGCTCTTGGCCTAGCGGAGAGTGGAAAACGGTT 899
|||||||| ||| ||||||| ||| || ||| |||| || ||||||||||||||||||||
Sbjct 840 ACTCACGTGTGAACAGTTCAATGAACTCGCTTTTGGTCTTGCGGAGAGTGGAAAACGGTT 899
Query 900 TCTTTGGGTCATACGAAGTCCGAGTGGGATAGCTAGTTCATCGTATTTCAATCCACAAAG 959
| ||||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||
Sbjct 900 TATTTGGGTCATACGAAGTCCAAGCGGGATAGCTAGTTCATCGTATTTTAATCCACATAG 959
Query 960 CCGAAA-TGATCCATTTTCGTTTTTACCACAAGGCTTCTTAGACCGAACCAAAGAAAAAG 1018
|| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 960 CC-AAACTGATCCATTTTCGTTTTTACCACAAGGGTTCTTAGACCAAACCAAAGAAAAAG 1018
Query 1019 GTCTAGTGGTTGGGTCATGGGCTCCACAGGCTCAAATTCTGACTCATACATCTATAGGTG 1078
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1019 GTCTAGTGGTTGGGTCATGGGCTCCACAGACTCAAATTCTGACTCATACATCTGTAGGTG 1078
Query 1079 GATTTTTAACTCATTGTGGATGGAATTCGAGTCTAGAAAGTATTGTAAACGGTGTACCGC 1138
|||||||||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||
Sbjct 1079 GATTTTTAACGCATTGTGGATGGAATTCGACTCTAGAAAGTATTGTTAACGGTATACCGC 1138
Query 1139 TCATAGCATGGCCGTTATACGCGGAGCAAAAGATGAACGCATTGCTACTCGTGG 1192
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 1139 TCATAGCATGGCCATTATACGCAGAGCAAAAGATGAACGCATTGCTACTAGTGG 1192
Score = 217 bits (117), Expect = 2e-55
Identities = 153/169 (91%), Gaps = 8/169 (5%)
Strand=Plus/Plus
Query 1337 TTAGAGTCTTAAGGGACGATGGATTCTCTACCAAATCGCTTAATGAAGTTTCGTTGAAGT 1396
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1274 TTAGAGTCTTAAGGGACGATGGATTCTCTACGAAATCACTTAATGAAGTTTCGTTGAAGT 1333
Query 1397 GGAAAGCCCACCAACGAAAGATCGACCAAGAACAGGAATCATTTCTATGAATTTTCTGTT 1456
||| |||||||||||||||||||||||||||| || | |||||| ||||||| |||||||
Sbjct 1334 GGAGAGCCCACCAACGAAAGATCGACCAAGAATAG-A-TCATTTATATGAATATTCTGTT 1391
Query 1457 TGTCTTATATATAAA----CT--GTTAGTTGACATAAAATGAAACACAT 1499
||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 1392 TGTCTTATATATAAATAAACTCTGTTAGTTGACATAAAATGTTACACAT 1440
> Ahg470140 jgi|Araly1|470140|fgenesh2_kg.1__94__AT1G01390.1
Length=1572
Score = 1435 bits (777), Expect = 0.0
Identities = 1233/1450 (85%), Gaps = 43/1450 (3%)
Strand=Plus/Plus
Query 1 ATGGCAGATGGAAACACTCCACATGTAGCAATCATACCAAGTCCCGGTATAGGTCACCTC 60
|||||| | | ||||||||||||| |||| |||||||| |||||||| || |||||||||
Sbjct 13 ATGGCAAAAGCAAACACTCCACATATAGCCATCATACCGAGTCCCGGAATGGGTCACCTC 72
Query 61 ATCCCACTCGTCGAGTTAGCAAAGCGACTCCTTGA-CAATC-ACGGTTTCACCGTCACTT 118
|||||| ||||||||||||| ||||||||| |||| | | | || |||||||| |||| |
Sbjct 73 ATCCCATTCGTCGAGTTAGCTAAGCGACTCGTTGAGC-A-CGACTGTTTCACCATCACAT 130
Query 119 TCATCATCCCCGGCGATTCTCCTCCGTCTAAGGCTCAAAGATCCGTTCTCAACTCTCTCC 178
| |||||| || | || ||| | ||||||||||| |||| ||||||||||||||||||||
Sbjct 131 TGATCATCTCCAGTGAATCTTCGCCGTCTAAGGCACAAAAATCCGTTCTCAACTCTCTCC 190
Query 179 CTTCCTCCATAGCCTCCGTCTTCCTCCCTCCCGCCGATCTTTCCGACGTTCCTTCGACAG 238
||||||||||||||||||| || ||||||||||||||||||||||| ||||| || || |
Sbjct 191 CTTCCTCCATAGCCTCCGTATTTCTCCCTCCCGCCGATCTTTCCGATGTTCCCTCCACTG 250
Query 239 CTCGAATCGAAACTCGGAT-ATCGCTCACCGTGACTCGTTCCAACCCGGCGCTCCGGGAG 297
| ||||||||||||||| | || ||||||| ||||||||||||| |||||||||||||||
Sbjct 251 CACGAATCGAAACTCGGGTCAT-GCTCACCATGACTCGTTCCAATCCGGCGCTCCGGGAG 309
Query 298 CTTTTTGGCTCGTTATCGGCGGAGAAACGTCTCCCGGCGGTTCTCGTCGTCGATCTATTT 357
||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||
Sbjct 310 CTTTTTGGCTCCTTATCAACGAAGAAACGTCTCCCGGCGGTTCTCGTCGTCGATATGTTT 369
Query 358 GGTACGGATGCGTTCGACGTGGCTGCTGAGTTCCACGTGTCGCCATACATTTTCTATGCA 417
||||||||||| ||||| ||||| | ||| ||||||||||| ||||||||||||||||||
Sbjct 370 GGTACGGATGCTTTCGATGTGGCCGTTGACTTCCACGTGTCACCATACATTTTCTATGCA 429
Query 418 TCAAATGCCAACGTCCTCACGTTTCTGCTTCACTTGCCGAAGCTAGACGAAACGGTGTCG 477
||||||||||||||| | ||||| | |||||||||||||| || |||||||||||||||
Sbjct 430 TCAAATGCCAACGTCTTGTCGTTTTTTCTTCACTTGCCGAAACTTGACGAAACGGTGTCG 489
Query 478 TGTGAGTTTAGGGAATTAACCGAACCGGTTATTATTCCCGGTTGTGTCCCCATAACCGGT 537
|||||||||||| | |||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 490 TGTGAGTTTAGGTACTTAACCGAACCGGTTAAGATTCCCGGCTGTGTCCCGGTAACCGGT 549
Query 538 AAGGA-TTTCGTCGATCCGTGT-CAAGACCGAAAAGATGAATCATACAAATGGCTTCTAC 595
||||| |||| | ||| || || ||||||||||| || || ||||||||| |||||| |
Sbjct 550 AAGGACTTTCTT-GATACG-GTTCAAGACCGAAACGACGACGCATACAAATTGCTTCTCC 607
Query 596 ACAACGTCAAGAGATTCAAAGAAGCTGAAGGGATTCTAGTGAATTCCTTCGTCGATTTAG 655
| ||| |||||| | |||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct 608 ATAACACCAAGAGGTACAAAGAAGCTAAAGGGATTCTAGTGAATTCATTCATCGATTTAG 667
Query 656 AGCCAAACACTATAAAGA-TTGTACAAGAACCGGCTCCTGATAAACCACCGGTTTACCTG 714
|||| || |||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 668 AGCCGAATGCTATAAAGGCTT-TACAAGAACCGGCTCCTGATAAACCACTGGTTTACCCA 726
Query 715 ATTGGGCCGTTGGTTAACTCGGGTTCA-CACGATGCTGACGTG-AACGATGAGTACAAAT 772
||||| ||| |||||||| | ||||| | |||| | ||||| || | ||| | |||
Sbjct 727 ATTGGCCCGCTGGTTAACACAAGTTCATCT-GATGTTAACGTGGAAA-ACAAGTCCGAAT 784
Query 773 GTTTAAATTGGCTAGACAACCAACCATTCGGGTCGGTTCTATACGTATCCTTTGGAAGCG 832
||||| ||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||
Sbjct 785 GTTTAGATTGGCTAGACAAGCAACCATTCGGCTCGGTTCTATATATATCATTTGGAAGCG 844
Query 833 GCGGAACACTCAC-GTTTGAGCAGTTCATTGAGCTGGCTCTTGGCCTAGCGGAGAGTGGA 891
||||||||||||| ||| |||||||||| |||||| |||||||| || || ||||| | |
Sbjct 845 GCGGAACACTCACAGTT-GAGCAGTTCAATGAGCTTGCTCTTGGTCTTGCAGAGAGCG-A 902
Query 892 -AAACGGTTTCTTTGGGTCATACGAAGTCCGAGTGG-GATAGCTAGTTCATCGTATTTCA 949
||||||||| |||||| |||||||||||| || || | |||||||||| || |||||||
Sbjct 903 TAAACGGTTTATTTGGGCCATACGAAGTCCAAGCGGAG-TAGCTAGTTCGTCATATTTCA 961
Query 950 ATCCACAAAGCCGAAAT-GATCCATTTTCGTTTTTACCACAA-GGCTTCTTAGACCGAAC 1007
||||||| |||| ||| || || ||||||||||||||| | || ||||||||||||||
Sbjct 962 ATCCACACAGCC-AAACCGACCCCTTTTCGTTTTTACCA-ATTGGATTCTTAGACCGAAC 1019
Query 1008 CAAAGAAAAAGGTCTAGTGGTTGGGTCATGGGCTCCACAGGCTCAAATTCTGACTCATAC 1067
|||||| |||||||| |||||| |||||||||||||||||| |||||| ||| ||||| |
Sbjct 1020 CAAAGAGAAAGGTCTGGTGGTTCGGTCATGGGCTCCACAGGTTCAAATCCTGGCTCATCC 1079
Query 1068 ATCTATAGGTGGATTTTTAACTCATTGTGGATGGAATTCGAGTCT-AGAAAGTATTGTAA 1126
||| | | | || |||||||| || |||||||||||||||| || |||||| |||||||
Sbjct 1080 ATCCACATGCGGGTTTTTAACACACTGTGGATGGAATTCGAC-CTTAGAAAGCATTGTAA 1138
Query 1127 ACGGTGTACCGCTCATAGCATGGCCGTTATACGCGGAGCAAAAGATGAACGCATTGCTAC 1186
|||||||||| |||||||||||||| |||| ||||||||||||||||| |||||||| |
Sbjct 1139 ACGGTGTACCACTCATAGCATGGCCTTTATTTGCGGAGCAAAAGATGAATGCATTGCTTC 1198
Query 1187 TCGTGGA---TGTTGGTGCGGCTCTAAGAG-C-ACGACTGGGTGAAGACGGGGTCGTA-G 1240
||||||| |||||| |||||||||||| | | | | ||||| ||| ||| | ||| |
Sbjct 1199 TCGTGGAGGATGTTGGAGCGGCTCTAAGAATCCATG-C-GGGTGGAGATGGGATTGTACG 1256
Query 1241 GAAGGGAAGAAGTGGCGAGAGTGGTAAAAGGATTGATAGAAGGAGAAGAAGGGAATGCGG 1300
|| |||||||||||| ||||||||| || ||| |||| |||||||||||||| || ||
Sbjct 1257 GA-GGGAAGAAGTGGTGAGAGTGGTGAAGGGACTGATGGAAGGAGAAGAAGGAAAAGCCA 1315
Query 1301 TAAGGaaaaaaaTGAAAGAGTTGAAAGAAGGA-TCTGTTAGAGTCTTAAGG-GACGATGG 1358
|| |||| |||||||| ||||||||| ||||| | ||||| |||||| || ||||||||
Sbjct 1316 TAGGGAATAAAATGAAGGAGTTGAAACAAGGAGT-TGTTAAAGTCTTG-GGAGACGATGG 1373
Query 1359 ATTCTCTACCAAATCGCTTAATGAAGTTTCGTTGAAGTGGAAAGCCCACCAACGA-AAGA 1417
|||||| ||||| || ||| |||| ||| ||| |||||||||| |||||| ||| || |
Sbjct 1374 ATTCTCCACCAAGTCATTTAGTGAACTTTTGTTAAAGTGGAAAGACCACCAGCGAGAA-A 1432
Query 1418 TCGACCAAGA 1427
|| |||||||
Sbjct 1433 TCAACCAAGA 1442
> Ahg490463 jgi|Araly1|490463|fgenesh2_kg.6__3597__AT4G01070.1
Length=1810
Score = 773 bits (418), Expect = 0.0
Identities = 1103/1426 (77%), Gaps = 77/1426 (5%)
Strand=Plus/Plus
Query 22 CATGTAGCAATCATACCAAGTCCCGGTATAGGTCACCTCATCCCACTCGTCGAGTTAGC- 80
||||| || |||||||||||||| || || ||||| |||||||||||||||||||| ||
Sbjct 164 CATGTTGCGATCATACCAAGTCCGGGAATGGGTCATCTCATCCCACTCGTCGAGTTCGCT 223
Query 81 AAAGCGACTCCTTGACAA--TCACGGTTTCACCGTCACTTTCATCATCCCCGGCGATTCT 138
||| |||||| || ||| |||||| |||||||| || ||| ||||| |||| || |
Sbjct 224 AAA-CGACTCGTT--CAACGTCACGGCTTCACCGTTACCTTCGTCATCGCCGGGGAAGGT 280
Query 139 CCTCCGTCTAAGGCTCAAAGATCCGTTCTCAACTCTCTCCCTTCCTCCATAGCCTCCGTC 198
|| ||||| || ||||| ||| |||| || ||||||||||||| || || | ||||||
Sbjct 281 CCACCGTCAAAAGCTCAGAGAACCGTCCTTGACTCTCTCCCTTCTTCGATCTCATCCGTC 340
Query 199 T-TCCTCCCTCCCGCCGATCTTTCCGA-CGT-TCCTTCG-ACAGCTCGAATCGAAACTCG 254
| | |||||||||| ||||| ||| | | | ||||| || |||| |||||| ||||
Sbjct 341 TAT-CTCCCTCCCGTTGATCTCAGCGATC-TAT-CTTCGTCCA-CTCGCATCGAATCTCG 396
Query 255 GATATCGCTCACCGTGACTCGTTCCAACCCGGCGCTCCGG-GAGCTTTTTGGCTCGTTAT 313
||| || ||||||||||||||||| ||||||| ||||||| || | || | ||||||
Sbjct 397 GATCTCCCTCACCGTGACTCGTTCAAACCCGGAGCTCCGGAAAG-TCTTCGACTCGTTCG 455
Query 314 CGGC-GGAGAAACGTCTCCCGGCGGTTCTCGTCGTCGATCTATTTGGTACGGATGCGTTC 372
|||| |||| ||| | ||| ||| ||| |||||||||| || |||||||| || |||
Sbjct 456 CGGCGGGAG-GTCGTTTGCCGACGGCGCTCATCGTCGATCTCTTCGGTACGGACGCTTTC 514
Query 373 GACGTGGCTGCT-GAGTTCCACGTGTCGCCATACATTTTCTATGCATCAAATGCCAACGT 431
|||||||| | | || ||||||||||| || || |||||||| || ||| ||||||||
Sbjct 515 GACGTGGCCG-TAGAATTCCACGTGTCACCGTATATTTTCTACCCAACAACGGCCAACGT 573
Query 432 CCTCACGTTTCTGCTTCACTTGCCGAAGCTAGACGAAACGGTGTCGTGTGAGTTTAGGGA 491
| | ||||| | || || ||||| || |||||||||||||||||||||||||| |||||
Sbjct 574 CTTGTCGTTTTTTCTCCATTTGCCTAAACTAGACGAAACGGTGTCGTGTGAGTTCAGGGA 633
Query 492 ATTAACCGAACCGGTTATTA-TTCCC-GGTTGTGTCCCCATAACCGGTAAGGATTTCGTC 549
||||||||||||| ||| | |||| || ||||| || | |||| || |||||| |
Sbjct 634 ATTAACCGAACCGCTTA--AGCTCCCTGGATGTGTACCGGTCGCCGGGAAAGATTTCCTT 691
Query 550 GATCCGTG-TCAAGACCGAAAAGATGAAT-CATACAAATGGCTTCTACACAACGTCAAGA 607
|| ||| | |||||||| ||||| | || |||||||||||||||| || ||| |||||
Sbjct 692 GACCCG-GCCCAAGACCGGAAAGACG-ATGCATACAAATGGCTTCTCCATAACACCAAGA 749
Query 608 GATTCAAAGAAGCTGAAGGGATTCTAGTGAATTCCTTCGTCGATTTAGAGCCAAACACTA 667
| | ||||||||||||||||||||| |||||| ||||| | || |||||||||| |||
Sbjct 750 GGTACAAAGAAGCTGAAGGGATTCTTGTGAATACCTTCTTTGAGCTAGAGCCAAATGCTA 809
Query 668 TAAA-G-ATTGTACAAGAACC-GGCTCCT-GATAAACCACCGGTTTA-CCTGATTGGGCC 722
|||| | ||| |||||||| || | || ||||||||||| ||||| || | |||| ||
Sbjct 810 TAAAGGCCTTG--CAAGAACCAGG-T-CTAGATAAACCACCCGTTTATCC-GGTTGGACC 864
Query 723 GTTGGTTAAC-TCGGGTTCA-CACGATGCTGACGTGAAC-GATGAGTAC-AAATGTTTAA 778
|||||||||| || || | | || || ||| | ||| || |||| | |||||||||
Sbjct 865 GTTGGTTAACATC-GG-TAAGCAAGAGGCT-AAACAAACTGAAGAGT-CTGAATGTTTAA 920
Query 779 ATTGGCTAGACAACCAACCATTCGGGTCGGTTCTATACGTATCCTTTGGAAGCGGCGGAA 838
| ||| | || ||||| || |||| |||||| | ||||| |||||||| || ||||| |
Sbjct 921 AGTGGTTGGATAACCAGCCGCTCGGTTCGGTTTTGTACGTGTCCTTTGGTAGTGGCGGTA 980
Query 839 CACTCACGTTTGAGCAGTTCATTGAGCTGGCTCTTGGCCTAGCGGAGAGTGGA-AAACGG 897
||||||| | ||| ||| ||| |||||| |||||||| || || || ||| || |||||
Sbjct 981 CACTCACATGTGAACAGCTCAATGAGCTTGCTCTTGGTCTTGCAGATAGT-GAGCAACGG 1039
Query 898 TTTCTTTGGGTCATACGAAGTCCGAGTGGGATAGCTAGTTCATCGTATTTCAATCCACAA 957
||||||||||||||||||||||| |||||||| |||| ||| ||||||||| || ||||
Sbjct 1040 TTTCTTTGGGTCATACGAAGTCCAAGTGGGATTGCTAATTCGTCGTATTTCGATTCACAT 1099
Query 958 AGCCGAAAT-GATCCATTTTCGTTTTTACCACAAGGCTTCTTAGACC-GAACCAAAGAAA 1015
|||| ||| |||||||| | |||||||||| ||| || ||||| | || ||||| ||
Sbjct 1100 AGCC-AAACCGATCCATTGACATTTTTACCACCAGGATTTTTAGAGCAGA-CCAAA-AAC 1156
Query 1016 A-AGGTCTAGTGGTTGGGTCATGGGCTCCACAGGCTCAAATTCTGA-CTCATACATCTAT 1073
| |||| | ||| | | ||||||||||| || ||| | || | | ||| |||| |
Sbjct 1157 AGAGGTTTTGTGATCCCTTTTTGGGCTCCACAAGCCCAAGT-CTTAGCACATCCATCCAC 1215
Query 1074 AGGTGGATTTTTAACTCATTGTGGATGGAATTCGAGTCTAGAAAGTATTGTAAACGGTGT 1133
|| || |||||||||||||| ||||||||||||| |||||| ||| | |||| |||| |
Sbjct 1216 GGGAGGGTTTTTAACTCATTGCGGATGGAATTCGACTCTAGAGAGTGTAGTAAGCGGTAT 1275
Query 1134 ACCGCTCATAGCATGGCCGTTATACGCGGAGCAAAAGATGAACGCA-TTGCTACTC-GTG 1191
|| || ||||||||||| |||||||| ||||| |||||||| || || | | |||
Sbjct 1276 TCCACTTATAGCATGGCCATTATACGCTGAGCAGAAGATGAATGCGGTTT-TGTTGAGTG 1334
Query 1192 --GATGTTGGTGCGGCTCTAAGAGCA-CGACTGG-GTGAA-GACGGGGTCGT-AGGAAGG 1245
||| || ||||||| || || || | | || | | | || ||| | || || | |
Sbjct 1335 AAGATATTCGTGCGGCACTTAG-GCCTC-A-TGCCGCGGACGATGGGTTAGTGAGTA-GA 1390
Query 1246 GAAGAAGTGGCGAGAGTGGTAAAAGGATTGATAGAAGGAGAAGAAGGGAATGCG-GTAAG 1304
||||| ||||| |||||||||||||||||||| ||||| |||||||| || | | || ||
Sbjct 1391 GAAGAGGTGGCAAGAGTGGTAAAAGGATTGATGGAAGGTGAAGAAGGCAAAG-GAGTGAG 1449
Query 1305 GaaaaaaaTGAAAGAGTTGAAAGAAGGATCT-GTTAGAGTCTT-AAGGGACGATGGATTC 1362
||| || ||||| || ||||| |||| | || || || || || |||| | ||||| | |
Sbjct 1450 GAACAAGATGAAGGAATTGAAGGAAGCAGCTTGT-AGGGTGTTGAAGG-ATGATGGGT-C 1506
Query 1363 T-CTACCAAATCGCTTAATGAAGTTTCGTTGAAGTGGAAAGCCCAC 1407
| | || ||| | |||| | || | || |||||||||||||||
Sbjct 1507 TTCCACAAAAGCACTTAGTCTTGTGGCCTTAAAGTGGAAAGCCCAC 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5