BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01430.1
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470137 jgi|Araly1|470137|fgenesh2_kg.1__91__AT1G01430.1 2263 0.0
> Ahg470137 jgi|Araly1|470137|fgenesh2_kg.1__91__AT1G01430.1
Length=1600
Score = 2263 bits (1225), Expect = 0.0
Identities = 1509/1638 (92%), Gaps = 51/1638 (3%)
Strand=Plus/Plus
Query 18 ATGATGAAGTTCCTCGCTTTCAACGCCAACCAAAAACCTCCAGAAAGCTAATTAGGGAAA 77
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1 ATGGTGAAGTTCCTCGCTTTCAACGCCGACCAAAAACCTCCAGAAAGCTAATTA--GAAA 58
Query 78 CATTTGAAAAAACTCAGTGATCTGCTCTTCTCTCTAATTGCAATGGATTCATTGAGATTA 137
|||| |||||||||| ||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 59 GATTTAAAAAAACTCACTGATCTGTTCTTCTCTCTAATTTCAATGGATTCGTTGAGATTA 118
Query 138 ATATCTAAGAGCATCAAGATTGAAGGAACCCCATTTGGTTCCTCTCACCAACGCAATCAA 197
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 ATATCTAAGAGCATCAAGATTGAAGGAAACCCATTTGGTTCCTCTCACCAACGCAATCAA 178
Query 198 ATTTTCCTCAAATCCGTCGCTTTCTTCCTTTTGATCGGTCTCGCTTACCGTTTTCTCATC 257
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 179 ATTTTCCTCAAATCCGTCGCTTTCTTCCTTTTGATCGGTCTCGCTTACCGTTTTATCGTC 238
Query 258 ACTAATTCCACCGTCTCTCCGGTTCCCACCGTTCGATCCTCGCCGGAATCTCTCCCGCCG 317
||| |||||||||||||||||||| ||| ||||| | ||| ||| | | || | ||
Sbjct 239 ACTGATTCCACCGTCTCTCCGGTTACCAACGTTCAAACCTTGCC-G---C-CT---G-CG 289
Query 318 GATCCTTCAGGTCTCACTGCCATCACTCAAACTTCAGCCTCTGTCGATTCCCCAGCAAAC 377
|||||||| ||||||| || ||||| | | || || | |||||||||| ||||
Sbjct 290 GATCCTTCTGGTCTCA----CA--GCTCAAGC--C-TCC-CT-T-GATTCCCCAGGAAAC 337
Query 378 ATCACAACC---ATTGCTTCACAGAATGTTTCAACCAAGTGTGATATCTTTATCGGGAAT 434
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 338 ATCACAACCATTATTCCTTCACAAAATGTTTCAACCAAGTGTGATATCTTTATCGGGAAT 397
Query 435 TGGGTACCAGACCCATCAGGGCCAATCTACACCAATGTCTCTTGCCGTCATATCCAAGAT 494
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 398 TGGGTACCAGACCCATCAGGTCCCGTCTACACCAATGTCTCTTGCCGTCATATCCAAGAT 457
Query 495 TACCAAAATTGCTTGAAAAACGGAAGGCCAGATGTGAATTACCTTCGATGGAGATGGCAA 554
||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 458 TACCAGAATTGCTTGAAAAACGGACGGCCAGATGTGAATTACCTTCAATGGAGATGGCAA 517
Query 555 CCTCGCGATTGCGATCTCCCGAGGTTTAACCCTGAGCAATTCCTTGACAATATGAGGAAC 614
||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 518 CCTCGCGATTGCGATCTCCCGAGGTTTGATCCTGAGCAATTTCTTGACAATATGAGGAAC 577
Query 615 AAATGGTTGGCTTTTATCGGTGATTCCATCTCTCGTAACCATGTCCAATCCCTCCTCTGC 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 578 AAATGGTTGGCTTTTATCGGTGATTCCATCTCTCGTAACCATGTCCAATCCCTCATCTGC 637
Query 675 ATTCTCTCTCAGGTAGAAGAAGTAGAAGATATCTTCCATGACAAGGAATACAAAT-CAAG 733
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 638 ATTCTCTCTCAGGTAGAAGAAGTAGAAGATATCTACCATGACAAGGAATACAAATCCAA- 696
Query 734 GATCTGGAGATTCCCTTCTTACAACTTCACACTCTCTGTCATTTGGTCTCCTTTCCTTGT 793
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 697 GATTTGGAGATTCCCTTCTTACAACTTCACACTCTCTGTCATTTGGTCTCCTTTCCTTCT 756
Query 794 A-AAAGCTGAAACCTTTGAGAACGGA-GTTC--CTTTCTCAGACATTCGAGTACACCTCG 849
| ||| ||||||||||||||||| | | || | | ||||||| | |||||||||
Sbjct 757 ACAAA-CTGAAACCTTTGAGAAC-AACG-TCAACGGAGT-TGACATTCAACTACACCTCG 812
Query 850 ACAAGCTAGACCAGAAATGGACTGATCAGTACATCAATTTCGACTACGTTGTCATCTCCG 909
||||| ||||||| |||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 813 ACAAGTTAGACCAAAAATGGACAGATCAGTACATCAATTTCGACTATGTCATCATCTCCG 872
Query 910 GTGGAAAATGGTTCCTCAAAACAACAATCTTCCATGAAAACAACACCGTAACCGGATGCC 969
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 873 GTGGAAAATGGTTCCTCAAAACAACAATCTTCCATGAAAACAACACTGTAACCGGATGCC 932
Query 970 ATTACTGCCAAGGGAAGAACAATATGACCGAACTCGGTTATCTATACTCGTACCGAAAGG 1029
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 933 ATTACTGCCAAGGGAAGAACAATCTGACCGAACTCGGTTATCTCTACTCGTACCGAAAGG 992
Query 1030 TTCTTCATTTGGTTTTAGACTTTGTCGCTGAACCGAACCATAAAGCTCAGGTTCTCTTCA 1089
||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 993 CTCTTCGTTTGGTTTTAGACTTTGTCGCTGAACCAAACCATAAAGCTCATGTTCTGTTCA 1052
Query 1090 GAACAACAACACCTGATCATTTCGAGAATGGAGAGTGGGACTCTGGTGGTTTCTGTAACC 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GAACAACAACACCTGATCATTTCGAGAATGGAGAGTGGGACTCTGGTGGTTTCTGTAACC 1112
Query 1150 GAACAATGCCGTTTACGGAAGGCAGCGAAGGAGAGATGAAGAGCGAGGATGTATCGATGC 1209
|||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 1113 GAACAATGCCGTTTACAGAAAGCAACGAAGGAAAGATGAAGAGCGAGGATGTATCGATGC 1172
Query 1210 GTGATATCGAGCTTGAAGAGTTCTATAAGACTACTACTACACAACAAGAAGGTTCCAATT 1269
|||||||||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 1173 GTGATATCGAGCTTGAAGAGTTCTATAAGACTACTA--A-ACAA---GAAGGTTCCAATT 1226
Query 1270 CAAACATT-GTATTACTTGACACAACTTCAATGTCGCTTCTCCGACCAGATGGACATCCG 1328
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 CAAACATTAG-ATTACTTGACACAACTTCAATGTCGCTTCTCCGACCAGATGGACATCCG 1285
Query 1329 GGACCGTACCGGTATCCAAATCCTTTCGCTGGGCTGAAGAACAAGGAGCTGAATCAGGTT 1388
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1286 GGACCGTACCGGTATCCGAATCCTTTCGCTGGGGTGAAGAACAAGGAGCTGAATCAGGTT 1345
Query 1389 CAGAACGATTGTCTTCATTGGTGCTTACCCGGTCCGATTGATTCATGGAATGATCTAATG 1448
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 CAGAACGATTGTCTTCACTGGTGCTTACCCGGTCCGATTGATTCATGGAATGATCTAATG 1405
Query 1449 GTCGAGGTGATGCTTAACCGGGAACGGCAAAGACGAGAATAGCCTCTCGACTTCACGTGC 1508
|| ||||||||||||||||||||||||||||||||||||||||||| || |||| | |
Sbjct 1406 GTGGAGGTGATGCTTAACCGGGAACGGCAAAGACGAGAATAGCCTC--GAATTCATG-GA 1462
Query 1509 TGTT---GTTTTCTAATTAGTTTGTTTG-TTTGCTCGTAAAAAAGCCCATTTATTATTGG 1564
| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1463 TATTAATGTTTTCTAATTAGTTTGTTTGCTTTGCCCGTAAAAAAGCCCATTTATTATTGG 1522
Query 1565 ACCTTCCGTGGGTCCAAATACAAGCACTGTCGTTTTTTGATGTGGGAATGAAACGCCGTG 1624
|||||||||||||| |||||||| |||||||||||||||||||||||| ||||| || |
Sbjct 1523 ACCTTCCGTGGGTCTAAATACAACCACTGTCGTTTTTTGATGTGGGAACAAAACGTCGCG 1582
Query 1625 TCGTTTTACTTCCTCAGC 1642
||||||||||||||||||
Sbjct 1583 TCGTTTTACTTCCTCAGC 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61553835920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5