BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01440.1
Length=2221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918823 jgi|Araly1|918823|scaffold_100104.1 2918 0.0
> Ahg918823 jgi|Araly1|918823|scaffold_100104.1
Length=2039
Score = 2918 bits (1580), Expect = 0.0
Identities = 1899/2046 (93%), Gaps = 50/2046 (2%)
Strand=Plus/Plus
Query 135 ttttt-tttttCCGATGAGGACAAGCGGTGACGTTTATGGAGCAGATACTGGTTCCTCAA 193
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 14 TTTTTCTTTTTCCGATGAGGACAAGCGGTGACGTTTATGGAGCAGATGCTGGTTCTTCAA 73
Query 194 GAAGTGATGAAGACAGAGGCTTTAAGGAGGATCTCAATGAATCCGCTACTAGCCCGATGA 253
||||||||||||| ||||| ||||||||||||||||||||| || | ||||||||||||
Sbjct 74 GAAGTGATGAAGATAGAGGGTTTAAGGAGGATCTCAATGAA-CC-C-GCTAGCCCGATGA 130
Query 254 GAAATCGCCTA-GACGATTCGAATTCACGACCTGGTTCTCAGAGATTCGTCAAGAGCTCG 312
||||||||| | || |||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 131 GAAATCGCC-AGGAAGATTCGAATTCACGACCTGGGTCTCAGAGATTCGTCAAGAGCTTG 189
Query 313 AGAAAGGAGGAAGAGACTGATTCAGATTCTTCTTCTTCTAAGAACACAACCACCAGAAAC 372
||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 190 AGAAAAGAAGAAGAGACTGATTCAGATTCTTCTTCTTCTAAG---------ACCAGAAAC 240
Query 373 AACCCAATTCAGTACACTGATAAACAACAAGCCGAGCTTTTGAGAAAGCTTGATTCTATT 432
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACCCAATTCAGTACACAGATAAACAACAAGCCGAGCTTTTGAGAAAGCTTGATTCTATT 300
Query 433 AAAGATCATCTTCTCCGTGGTGGAGGTAATAATGCTACTGTTGTTGATCAG------CCA 486
|||||||||||||||||||||||||| |||||||| ||| | ||||||| |||
Sbjct 301 AAAGATCATCTTCTCCGTGGTGGAGG---TAATGCTAATGTGGCTGATCAGCCACCACCA 357
Query 487 CCAATGGGTTTCCATGCCCATCATGGACCTCCTCCTTCTTATTACAATCCATACCCTGAG 546
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 358 CCAATGGGTTTCCATG---GTCATGG---TCCTCCTTCTTATTACAATCCATACCCTGAG 411
Query 547 CCATTTCCTTATGGAATGTATCCTACCGCGAGTAA-CCAACCTCATGTTCCAGCTTATAG 605
|| |||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 412 CCGTTTCCTTATGGAATGTATCCTACCGCGAGTAACCCGA-CTCATGTTCCAGCTTATAG 470
Query 606 AGACCCTTATGGATTCCCAGTGCATAGGA-TACCTCAAAACTTTTATCAAGGACCAAGTC 664
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 471 AGACCCTTATGGATTCCCAGTGCATA-GAGTACCTCAAAACTTTTATCAAGGACCAGGTC 529
Query 665 ATTACCCTAATCAGATGCCGCCTCGTCCACCCTATCCTCAAGGACAGTATGTAGACATTG 724
||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 530 ATTACCCGAATCAGATGCCGCCTCGTCCTCCATATCCTCAAGGACAGTATGTAGACATTG 589
Query 725 GCTCTGATATACTTGAGTCACAGTTACAGGACCCTAGATTCTTTCCGGGTACGCCAAGTA 784
| |||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 590 GTTCTGATATACTTGACACCCAGTTACAGGACCCTAGATTCTTTCCGGGTACGCCGAGTA 649
Query 785 GGTATGGTGATGTCCCATTTAGCCCGGCTTTGCACCACGGTGAGAAAGTTGGACCCTTTA 844
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 650 GGTACGGTGATGTCCCATTTAGCCCGGCTAAGCACCACGGTGAGAAAGTTGGACCCTTTA 709
Query 845 GTCCACATGGT-G-G-T----GT--TCACACGAGGTGGCCTAGTGAAATTGATTCTGAAA 895
||||||||||| | | | || ||||||||||||||||||||| |||||||||||||
Sbjct 710 GTCCACATGGTGGTGTTCAAGGTCATCACACGAGGTGGCCTAGTGATATTGATTCTGAAA 769
Query 896 TGGGTGGTGCTTTTGCTCGTGGGTATGTTCAACAAGCTGTGTCTGATACTGATTCACGTC 955
|||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 770 TGGGTGGTGCTTTTGCTCGTGGGTATGTTCAAAAAGCTGTTTCGGATACTGATTCACGTC 829
Query 956 GTTGCCATCCTCTAGCAGGCGGTGCGCCTTTTATTGCTTGTCACAGTTGCTTTGAGCTGC 1015
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 830 GTTGCCATCCTCTATCAGGCGGTGCGCCTTTTATTGCTTGTCACAATTGCTTTGAGCTGC 889
Query 1016 TATATGTGCCTAAGAAGAAGCTTCTTGGTCAGGAAAGGCAACAAAAGATGCAATGTGGTG 1075
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 890 TCTATGTGCCTAAGAAGAAGCTTCTTGGTCAGGAAAGGCAACAAAAGCTGCAATGTGGTG 949
Query 1076 CTTGTTCTGAGGTTATCACG-TTCAGAGTTGTTGATAAGAAGCTTGTTTTCTCATCTTCT 1134
|||||||||||||||||| | |||| ||||||||||| ||||||||||||||| ||||||
Sbjct 950 CTTGTTCTGAGGTTATCA-GTTTCACAGTTGTTGATAGGAAGCTTGTTTTCTCCTCTTCT 1008
Query 1135 GCCCTGGGGGAAACTACGAACCGGGTTTCTGTAGAGGTTGAAGATAGAAGCTCACCAATC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1009 GCCCTGGGGGAAACTACGAACCGGGTTTCTGTAGAGGTTGAAGATAGAAGCGCACCAAGC 1068
Query 1195 CCTGTGGTAGATGATTATCCACTCAATGATGAAGAACCAAGAATACACCAGGAAACGAAA 1254
|||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct 1069 GCTGTGGTAGATGATTATCCACTTAAGGATGAGGAAATAAGAATACACCAGGAAACGAAA 1128
Query 1255 ATTGTCCATGCTGTATCGCCTAGTGATCACTCAAACGATGAAGACAGGTCAAGCATTTCT 1314
||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 1129 ATTGTACATGCTGTATCGCCTAGTGAACACTCAGACGACGAAGACAGGTCAAGCATTTCT 1188
Query 1315 AGTGA-GCCGCGGAAACAGGTCGTCAAGTCTGTTCGCAGCAGAGCCCAAGGCGCGAAGG- 1372
||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1189 AGT-AGGCCGCAGAAACAGGTCGTCAAGTCTGTTCGCAGCAGAGCCCAAGGCGCAAAGGT 1247
Query 1373 -T-tcctcctcctcctcctccGGAAAAGTCCAATCTTCTTGAGCTCTTTGAGTATTCTAA 1430
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TTCTCCTCCTCCTCCTCCTCCTGAAAAGTCCAATCTTCTTGAGCTCTTTGAGTATTCTAA 1307
Query 1431 TGTAAACCGAGCTGCAATCACTTACGGAATGGCGCAGTTAGGGTACTATAAGCAAGAATC 1490
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1308 TGTAAACCGAGCTGCAATCACTTACGGAATGGCGCAGCTAGGGTACAATAAGCAAGAATC 1367
Query 1491 ATACACGAAACAAGACTCCCTGAAATCAGAATCAGTAGCTACTGAGACAGATGTTTCTTA 1550
|||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1368 CTACAGGAAACAAGACTCGCTAAAATCAGAATCAGTAGCTACTGAGACAGATGTTTCTTA 1427
Query 1551 TAATGAGTACTATACTAACACCGAGGAGTCTGAAGATTCAAGGATCTCAAAAGCCAGCAA 1610
|||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1428 TAATGAATACTATAATAACACTGAGGAGTCTGAAGATTCAAGGATCTCAAAAGCCAACAA 1487
Query 1611 AGAAGGGAGACGACCAAGAAACCGAAAGCAGAGTAGTGAGCACAGTTTCGCAGAGGTCAC 1670
||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1488 AGAAGAGAGAAGACCAAGAAACCGAAAGCAGAGTAGTGAGTACAGTTTCCCAGAGGTCAC 1547
Query 1671 AAATAATATCAGTTCTAACGACCAAAACAACGAGCAGCTAGAGGTTTGGGTGAATGGGTA 1730
|||||| ||| | ||||||||||||||| |||||||| |||||||||||||||| ||| |
Sbjct 1548 AAATAAAATCGGCTCTAACGACCAAAACGACGAGCAGTTAGAGGTTTGGGTGAACGGGCA 1607
Query 1731 TCTGATACCAGAAGATCTGGTTATTAGCGCTGAGAAACAAGCTGGGCCAGTTCAAGCTGG 1790
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1608 TCTGATACCGGAAGATCTGGTTATCAGCGCTGAGAAACAAGCTGGACCAGTTCAAGCTGG 1667
Query 1791 CAAATACTGGTATGATTACCGTGCTGGATTCTGGGGAGTGATGGGAAACCCTTGTCTCGG 1850
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1668 CAAATACTGGTATGATTACCGTGCTGGGTTCTGGGGAGTGATGGGAAACCCGTGTCTCGG 1727
Query 1851 TATAATACCACCATTTATAGAGGAGTTTAGTCGACCAATGCCGGATAACTGCGGTGCAGG 1910
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1728 TATAATACCACCATTTATCGAAGAGTTTAGTCGCCCAATGCCGGATAACTGCGGTGCAGG 1787
Query 1911 AAACACGAGTGTGTTTGTAAACGGAAGAGAGCTTCACGAGAGAGACCTAGAGTTACTATC 1970
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1788 AAACACGAGCGTGTTTGTAAACGGAAGAGAGCTTCACGAGAGAGATCTAGAGTTACTTTC 1847
Query 1971 AAGTAGAGGTCTTCCTCGAGGCAAGAACCGTTCTTACATCATTGATATAGCAGGAAGAGT 2030
||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1848 AAGAAGAGGTCTTCCTGGAGGCAAGAATCGTTCTTACATCATTGATATATCAGGAAGAGT 1907
Query 2031 TCTTGATGGAGACTCTGGTGAAGAACTTAAGAGTCTTGGCAGATTAGCTCCAACGGTTGA 2090
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1908 TCTTGATGGAGACTCTGGTGAAGAACTTAAGAGCCTTGGCAGATTAGCTCCAACGGTTGA 1967
Query 2091 CAAGGTGAAGCATGGATTTGGCATGAGGGTTCCAAGATCATTAGTCTCGTGAAGCTTCGT 2150
|||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||| |
Sbjct 1968 CAAGGTTAAGCATGGATTTGGCATGAGAGTTCCAAGATCATTAGTTTCATGAAGCTTCAT 2027
Query 2151 CAGCTT 2156
||||||
Sbjct 2028 CAGCTT 2033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83608087775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5