BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01450.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909830 jgi|Araly1|909830|Al_scaffold_0001_84 2076 0.0
> Ahg909830 jgi|Araly1|909830|Al_scaffold_0001_84
Length=2913
Score = 2076 bits (1124), Expect = 0.0
Identities = 1256/1319 (95%), Gaps = 11/1319 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGATTTCCTTTTGAAGCATTTGGGAGATGGAAATGAGAGCCCCAAGCTATTTCCT 60
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1435 ATGGCTGATTTCCTTTTGAAGCATTTGGGAGATGGTAATGAGAGTCCCAAGCTATTTCCG 1494
Query 61 TCTTCTCTTCTGGAT-AACACAAAAGATTACCAAGTGaaaaaaaGATTAGGGAATGGAAG 119
||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TCTTCTCTTCTGG-TAAACACGAAAGATTACCAAGTGAAAAAAAGATTAGGGAATGGAAG 1553
Query 120 TCAGTACAAGGAGATTACCTGGTTAGGCGAGAGCTTTGCGCTTAGGCATTTCTTTGGGGA 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TCAGTACAAGGAGATTACTTGGTTAGGCGAGAGCTTTGCGCTTAGGCATTTCTTTGGGGA 1613
Query 180 TATTGATGCTTTGCTTCCTC-AGATTACTCCATTGCTATCTCTTTCACACCCAAACATTG 238
||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1614 TATTGATACTTTGCTTCC-CAAGGTTACTCCATTGCTATCTCTTTCACACCCAAACATTG 1672
Query 239 TATATTACCTCTGCGGATTCACGGATGAGGAGAAGAAAGAGTGTTTCTTGGTCATGGAAC 298
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1673 TTTATTACCTCTGCGGATTCACGGATGAGGAGAAGAAAGAATGTTTCTTGGTCATGGAAC 1732
Query 299 TGATGAGGAAAACCCTTGGAATGCACATCAAAGAGGTATGTGGTCCTAGGAAGAAGAACA 358
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1733 TGATGAGTAAAACCCTTGGTATGCACATCAAAGAGGTATGTGGTCCGAGGAAGAAGAACA 1792
Query 359 CTCTCTCCCTCCCGGTCGCGGTTGATCTGATGCTTCAGATAGCTTTGGGTATGGAATATC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 CTCTCTCCCTCCCGGTCGCGGTTGATCTGATGCTTCAGATAGCTTTGGGTATGGAATATC 1852
Query 419 TTCACTCGAAGAGAATATACCACGGAGAGTTGAATCCATCAAACATTCTTGTCAAACCAA 478
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1853 TTCACTCGAAGAGAATATACCACGGAGAGCTGAATCCATCTAACATTCTTGTCAAACCAA 1912
Query 479 GAAGTAACCAATCCGGAGATGGGTATCTGCTTGGGAAGATTTTTGGGTTCGGGTTGAATT 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 GAAGTCACCAATCCGGAGATGGGTATCTGCTTGGGAAGATTTTTGGGTTCGGGTTGAATT 1972
Query 539 CTGTCAAGGGATTCTCTAGTAAAAGTGCTTCTTTGACGAGTCAGAATGAGAATTTTCCAT 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 CTGTCAAGGGCTTCTCTAGTAAAAGTGCTTCTTTGACGAGTCAGAATGAGAATTTTCCAT 2032
Query 599 TCATATGGTATTCTCCAGAAGTTCTAGAGGAGCAAGAACAGAGTGGAACTGCAGGAAGCC 658
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2033 TCATATGGTATTCTCCCGAAGTTCTAGAGGAGCAAGAACAGAGCGGAACAGCAGGAAGCC 2092
Query 659 TTAAGTATAGTGATAAATCTGACGTGTATAGCTTTGGGATGGTTAGCTTTGAGCTTCTGA 718
| ||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2093 TCAAGTATACTGATAAATCTGACGTGTATAGCTTCGGGATGGTTTGCTTTGAGCTTCTGA 2152
Query 719 CAGGTAAAGTACCATTTGAAGATAGCCACCTGCAAGGAGATAAGATGAGTAGAAACATTA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 CAGGTAAAGTACCATTTGAAGATAGCCACCTGCAAGGAGATAAGATGAGTAGAAACATTA 2212
Query 779 GGGCCGGGGAGAGACCGCTTTTTCCATTTAATTCACC-AAAGTTCATAACAAACCTGACA 837
|||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 2213 GGGCTGGGGAGAGACCGCTTTTTCCATTTAATTCACCTAAA-TTCATAACAAACCTGACA 2271
Query 838 AAACGATGCTGGCATGCTGATCCCAATCAGCGTCCAACTTTCTCATCGATAAGCAGAATT 897
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 2272 AAACGATGCTGGCATGCTGATCCGAATCAGCGTCCAACTTTCTCATCGATAAGCAGAGTT 2331
Query 898 CTCCGGTATATCAAACGGTTTCTAGCTTTGAACCCGGAATGTTACAGTAGTAGCCAACAA 957
|||||||||||||| || ||||||||||||||||| || | | |||||||||||||||||
Sbjct 2332 CTCCGGTATATCAAGCGATTTCTAGCTTTGAACCCAGAGTATCACAGTAGTAGCCAACAA 2391
Query 958 GACCCGTCCATTGCGCCTACTGTGGATTACTGCGAGATCGAGACAAAGCTATTGCAGAAG 1017
|||||||||||||| ||| ||||||||||||| ||||||||| | |||||||||||||||
Sbjct 2392 GACCCGTCCATTGCTCCTCCTGTGGATTACTGGGAGATCGAGTCTAAGCTATTGCAGAAG 2451
Query 1018 CTTTCTTGGGAATCTACAGAGCTAAC-CAAAGTTTCACAGGTTCCTTTTCAAATGTTTGC 1076
||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 2452 CTTTCATGGGAATCTACAGAGTTAACTCAA-GTTTCACAGGTTCCTTTTCAAATGTTTGC 2510
Query 1077 ATATAGGGTTGTGGAACGGGCAAAAACGTGTGAAAAGGATAATCTCCGGGAACCATCGGA 1136
||||||||| |||||||||||| |||| ||| |||||||||||||||||||| |||||||
Sbjct 2511 ATATAGGGTGGTGGAACGGGCACAAACTTGTAAAAAGGATAATCTCCGGGAAACATCGGA 2570
Query 1137 ATCAGGAAGTGAATGGGCTTCGTGTAGCGAGGATGAGGGTGGGGCAGGATCAGATGAGCA 1196
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2571 ATCAGGTAGTGAATGGGCTTCCTGTAGCGAGGATGAGGGTGGGGCAGGATCAGATGAGCA 2630
Query 1197 GTTGTCATATGCCAAGGAAAGAAGATTGTCATGCTCCTCAAATGATGTTGGTATGAGCAA 1256
| ||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 2631 GGTGTCATATGAGAAGGAGAGAAGATTGTCATGCTC---AAGTGATGTTGGTATGAGCAA 2687
Query 1257 GAAGCAGGTTTCAAATCTTCTGAAAAGAGCTTCTAGCCTGAAACCAATTCAAAAACCAG 1315
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2688 GAAGCATGTTTCAAATCTTCTGAAAAGAGCTTCTAGCCTGAAACCAATTCAAAAACCAG 2746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5