BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01460.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311290 jgi|Araly1|311290|fgenesh1_pm.C_scaffold_1000070 1997 0.0
> Ahg311290 jgi|Araly1|311290|fgenesh1_pm.C_scaffold_1000070
Length=1281
Score = 1997 bits (1081), Expect = 0.0
Identities = 1218/1285 (95%), Gaps = 5/1285 (0%)
Strand=Plus/Plus
Query 158 ATGTTTACGCGGGAGATAACAGCAAAGGACGTGAAAGCCACTGAGAAAAACAGGATTCGA 217
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTTTACGCGGGAGATAACAGCAAAGGACGTGAAAGCGACTGAGAAAAACAGGATTCGA 60
Query 218 TACTCTTCCAAACACATAAAACATCTTCCTCCTGGAACCATTACTGAGTTCGAATGGAAG 277
||||||||||||||||| || |||||||| ||||||||||||||||| || |||||||||
Sbjct 61 TACTCTTCCAAACACATTAAGCATCTTCCACCTGGAACCATTACTGAATTTGAATGGAAG 120
Query 278 GATTATTGTCCCTTGGGATTCAGACTTATACAGGAACTTGAGGATATCAATCATGATGAG 337
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 121 GATTATTGTCCCTTGGGATTCAGACTTATACAAGAACTTGAGGATATTAATCATGATGAA 180
Query 338 TACATGAAGTCTATCTGTAATGATGAGACCTTAAGGAAGCTTTCTACTAGCAAAGTTGGT 397
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 181 TACATGAAGTCTATCTGTAATGATGAGACATTAAGGAAGCTTTCTTCTGGCAAAGTTGGT 240
Query 398 AACATGTTTCTTCTTTCCAAAGATGACCGTTTTCTCATTAAGATTCTACGCAAATCCGAA 457
|||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 241 AACATGTTCCTTCTCTCCAAAGATGACCGTTTTCTCATCAAGATTCTCCGCAAATCCGAA 300
Query 458 ATCAAGGTTATACTAGAGATGTTGCCTGGTTACTTCCGTCATATCCATAAATACAGGTCA 517
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCAAGGTAATACTAGAGATGTTGCCTGGTTACTTCCGTCATATCCATAAATACAGGTCA 360
Query 518 ACCTTGTTGTCCAAGAATTATGGAGCTCACTCTGTGAAGCCTATTGGAGGTGTTAAGACA 577
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 361 ACCTTGTTGTCCAAGAATTATGGAGCTCATTCTGTCAAGCCTATTGGAGGTGTTAAGACA 420
Query 578 TATTTTGTCGTCATGTCAAACATACTGCAGTCGGATGTTTTTATGAACAAGGTCTATGAT 637
||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||||||
Sbjct 421 TATTTTGTCGTCATGTCGAACATATTACAGTCGGATGTTTTTATGAATAAGGTCTATGAT 480
Query 638 CTAAAGGGTTCATCTCAAGGTCGGACTAACAAGAAGATCAAAGTGAGAGATAAAACCATA 697
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 CTAAAGGGTTCATCACAAGGTCGGACTAATAAGAAGATCAAAGTGAGAGATAAAACCATT 540
Query 698 TTGAAGGATATCGACCTTGATTTTTGTTTCTATGTGGATTCTTTGGCCAGACACCGTCTC 757
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 541 TTGAAGGATATAGACCTTGATTTTTGTTTCTATGTGGATTCTTTGGCTAGACACCGCCTC 600
Query 758 ATTAAGCAAACGAAGCTAGATTGTGAACTTTTGGAAGATGAAGGCATCATGGATTACAGC 817
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 601 ATCAAGCAAACAAAGCTAGATTGTGAACTTTTGGAAGATGAAGGCATAATGGATTATAGC 660
Query 818 TTAATGCTTGGTTTACAAGTGAAAGGCTCGTGTCATGGTTCAATTGATGAATTAATCCCG 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 TTAATGCTTGGTTTACAAGTGAAAGGCTCGTGTCATGGTTCAATTGATGAATTAAGCCCG 720
Query 878 GTATACGACAGCTTCACATC-ACGAGGCTCTGTTGACAGCAATAGCTCTAAGTTTATGAA 936
||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 721 ATATACGATAGCTTCACATCGA-GAGGCTCTGTTGACAGCAATAGCTCTAAGTTTATGAA 779
Query 937 GACAGCTTCAAACTCTCCAGATAGATCATCTTCTACAATGTATTCATGCACTCCCAGCAG 996
||||||||||||||||||||||||||| | | |||||||||||||||||||||| |||||
Sbjct 780 GACAGCTTCAAACTCTCCAGATAGATC-T-T-CTACAATGTATTCATGCACTCCAAGCAG 836
Query 997 AAATTCAGTTGATAGTGAGAACTCAGTGAATATACAATCAGTAGCAAGTATAAGCCCTAG 1056
|||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 837 AAATTCAGTTGATAGTGAGAACTCAGTGGATAAACAATCAGTAGCAAGTATTAGCCCTAG 896
Query 1057 TCCAGCACAAACCAACGCTTCTGATTCTCCATATGAAAGCCTTGTTTCCAAAACAAATCT 1116
|||||||| ||||| |||||||||||||||| ||| |||| ||||||||| ||||| |||
Sbjct 897 TCCAGCACCAACCAGCGCTTCTGATTCTCCACATGGAAGCATTGTTTCCAGAACAAGTCT 956
Query 1117 CACCAACATCTTCCAAAACAGCTCAAGCACTAACTTCGGTATGAAGATACCAGGACGAGC 1176
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 957 CACCAACATCTTCCAAAACAGCTCAAGCACAAACTTCGGGATGAAGATACCAGGACGAGC 1016
Query 1177 ACGACGGGTTGGGAGAGGAGAATCAGGGAGTGTGGTGGGAAAACAGAGCAGAGAAGGAGG 1236
||||||| | ||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 1017 ACGACGGATGGGGAGAGGAGAATCAGGGAGTGTGGTGGGAAAACACATCAGAGGAGGAGG 1076
Query 1237 AGAAGAATGGTACGATGTGATTTTGTATCTTGGGATTATAGACATTTTCCAAGACTACGG 1296
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1077 AGAAGAATGGTACGATGTGATATTGTATCTTGGGATCATAGACATTTTCCAAGACTATGG 1136
Query 1297 TGTGAGAAAACGCCTTGAACATTGTTACAAGTCAATTCAACACAGCTCTAAGACAATCTC 1356
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 TGTGAGAAAACGCATTGAACATTGTTACAAGTCAATTCAACACAGCTCTAAGACGATCTC 1196
Query 1357 AGCCGTCCATCCCAAGATGTATTCTTCTCGTTTCCAAGACTTTGTCTCTCAGATCTTCTT 1416
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1197 AGCCGTCCATCCCAAGATGTACTCTTCTCGTTTTCAAGACTTTGTCTCTCAGATCTTCTT 1256
Query 1417 ACCAGACGAAGATCCTTCTCACTGA 1441
|||||||||||||||||||| ||||
Sbjct 1257 ACCAGACGAAGATCCTTCTCGCTGA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5