BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01470.1

Length=727
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg333508 jgi|Araly1|333508|fgenesh1_pg.C_scaffold_1000073           732    0.0  


> Ahg333508 jgi|Araly1|333508|fgenesh1_pg.C_scaffold_1000073
Length=456

 Score =  732 bits (396),  Expect = 0.0
 Identities = 437/457 (96%), Gaps = 2/457 (0%)
 Strand=Plus/Plus

Query  123  ATGGCGAGCTTGCTAGATAAAGCCAAGGACTTCGTGGCGGATAAACTCACCGCGATCCCT  182
            ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct  1    ATGGCGAGCTTGCTAGATAAAGCCAAGGATTTCGTGGCGGATAAACTCACCACGATCCCT  60

Query  183  AAACCGGAGGGTTCAGTTACGGACGTTGACCTCAAAGACGTGAACCGTGACTCAGTTGAG  242
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||
Sbjct  61   AAACCGGAGGGTTCGGTTACGGACGTTGACCTTAAAGACGTGAACCGTGACTCCGTCGAG  120

Query  243  TACTTGGCCAAAGTCTCTGTCACCAATCCTTACAGTCATTCGATTCCGATCTGTGAGATC  302
            ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct  121  TACTTGGCCAAAGTCTCCGTCACCAATCCTTACAGTCATTCGATTCCGATCGGCGAGATC  180

Query  303  AGTTTCACTTTCCACAGCGCCGGCAGGGAGATTGGAAAGGGGAAGATACCGGACCCGGGT  362
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  181  AGTTTCACTTTCCACAGCGCCGGCAGGGAGATTGGAAAGGGAAAGATACCGGACCCGGGT  240

Query  363  TCTCTGAAAGCTAAGGACATGACGGCTCTTGATATTCCCG-TGGTGGTGCCGTATAGTAT  421
            |||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct  241  TCTCTGAAAGCTAATGACATGACGGCTCTTGATATT-CCGATGGTTGTGCCGTATAGTAT  299

Query  422  ACTGTTTAACCTGGCTCGAGACGTTGGTGTGGACTGGGACATTGACTACGAGCTCCAAAT  481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  ACTGTTTAACCTGGCTCGAGACGTTGGTGTGGACTGGGACATTGACTACGAGCTCCAAAT  359

Query  482  CGGTCTAACCATCGACCTTCCTGTTGTAGGGGAATTTACTATCCCTATCTCTAGTAAGGG  541
            |||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct  360  CGGTCTAACCATTGATCTTCCTGTTGTCGGGGAATTTACTATCCCTATTTCTAGTAAGGG  419

Query  542  AGAAATCAAACTTCCTACTTTTAAAGATTTCTTCTGA  578
             |||||||| |||||||||||||||||||||||||||
Sbjct  420  CGAAATCAAGCTTCCTACTTTTAAAGATTTCTTCTGA  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26762287734


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5