BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01480.1
Length=1920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918815 jgi|Araly1|918815|scaffold_100096.1 2425 0.0
> Ahg918815 jgi|Araly1|918815|scaffold_100096.1
Length=1532
Score = 2425 bits (1313), Expect = 0.0
Identities = 1462/1535 (95%), Gaps = 5/1535 (0%)
Strand=Plus/Plus
Query 61 AGTGAGAATTGACACAGCAAATGGGTCTTCCGGGAAAAAATAAAGGTGCAG-TTTTGTCG 119
|||| ||||| | |||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 1 AGTGGGAATTAAAACAGCAAATGGGTCTTCCGGCAAAAAATAAAGGTGC-GATTTTGTCG 59
Query 120 AAGATAGCGACTAACAATCAACACGGAGAGAACTCAGAGTACTTTGATGGATGGAAAGCT 179
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 60 AAGATAGCGACTAACGATCAACATGGAGAGAACTCAGAGTATTTTGATGGATGGAAAGCT 119
Query 180 TACGACAAAGATCCTTTTCATCTTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTT 239
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 120 TACGACAAAGATCCTTTCCATCTTTCCCGTAACCCTCATGGGATTATCCAAATGGGTCTT 179
Query 240 GCAGAGAATCAGCTTTGCTTAGATTTGATCAAAGATTGGGTCAAAGAGAACCCAGAAGCT 299
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 180 GCAGAGAATCAGCTTTGCTTAGATTTGATCAAAGATTGGGTCATGGAGAATCCAGAAGCT 239
Query 300 TCTATTTGCACCCTTGAAGGTATTCATCAGTTTAGCGACATCGCTAATTTCCAAGACTAC 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTATTTGCACCCTTGAAGGTGTTCATCAGTTTAGCGACATCGCTAATTTCCAAGACTAC 299
Query 360 CATGGTCTTAAGAAGTTTAGACAGGCAATTGCACATTTCATGGGAAAAGCTAGAGGTGGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATGGTCTTAAGAAGTTTAGACAGGCAATTGCACATTTCATGGGAAAAGCTAGAGGTGGA 359
Query 420 AGAGTGACTTTTGATCCGGAGAGGGTGGTTATGAGCGGAGGAGCCACCGGAGCCAATGAA 479
|||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 360 AGAGTGACATTTGATCCGGAGAGGGAGGTTATGAGCGGCGGCGCCACCGGAGCCAATGAA 419
Query 480 ACAATCATGTTCTGCCTTGCGGATCCCGGCGACGTTTTCCTCATTCCCTCCCCGTACTAT 539
||||| |||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 420 ACAATTATGTTCTGCCTTGCCGATCCCGGCGACGTTTTCCTCATTCCCTCTCCTTATTAT 479
Query 540 GCCGCATTTGATAGAGACTTGAGGTGGCGGACAGGTGTCGAGATAATCCCGGTTCCTTGT 599
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 GCTGCATTTGATAGAGACTTGAGGTGGCGTACAGGTGTCGAGATAATCCCGGTTCCTTGT 539
Query 600 TCAAGCTCCGACAATTTCAAATTAACCGTTGACGCCGCGGAATGGGCTTATAAAAAAGCC 659
||||||||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||
Sbjct 540 TCAAGCTCCAACAATTTCAAATTAACCGTTGAGGCCGTGGACTGGGCTTATAAAAAGGCC 599
Query 660 CAAGAGTCCAATAAAAAAGTCAAAGGTCTGATTTTGACCAACCCATCAAATCCACTCGGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAAGAGTCCAATAAAAAAGTCAAAGGTCTGATTTTGACCAACCCATCAAATCCACTCGGT 659
Query 720 ACAATGTTGGATAAGGACACACTCACGAACTTGGTCCGGTTTGTCACGAGGAAGAACATT 779
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 660 ACGATGTTGGATAAGGACACACTCACGAACTTAGTCCGGTTCGTCACGAGGAAGAACATT 719
Query 780 CACCTAGTCGTCGACGAGATCTACGCCGCCACAGTCTTCGCCGGAGGAGATTTCGTGAGC 839
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 720 CACCTAGTCGTCGACGAGATCTATGCCGCCACAGTCTTCGCCGGAGGAGATTTTGTAAGC 779
Query 840 GTTGCTGAGGTGGTCAATGATGTGGACATCTCCGAAGTCAACGTTGACTTGATTCACATT 899
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 GTTGCTGAGGTGGTCAACGATGTGGACATCTCTGAAGTCAACGTTGACTTGATTCACATT 839
Query 900 GTCTATAGTCTTTCTAAAGATATGGGACTTCCTGGTTTTAGAGTCGGGATAGTCTATTCT 959
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTCTATAGTCTTTCTAAAGACATGGGACTTCCTGGTTTTAGAGTCGGGATAGTCTATTCT 899
Query 960 TTCAATGACTCGGTCGTGTCTTGCGCAAGAAAAATGTCAAGTTTCGGACTTGTTTCGTCT 1019
| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 TACAATGACTCGGTCGTCTCTTGCGCAAGAAAAATGTCGAGTTTCGGACTTGTTTCGTCT 959
Query 1020 CAGACACAACTCATGCTTGCTTCGATGTTGTCCGATGATCAGTTTGTGGATAATTTTCTA 1079
|||||||||||||||||||||||||||||||| ||||||| |||||| || ||||||||
Sbjct 960 CAGACACAACTCATGCTTGCTTCGATGTTGTCAGATGATCGGTTTGTAGAAAATTTTCTT 1019
Query 1080 ATGGAAAGCTCGAGAAGGTTGGGGATAAGGCATAAAGTTTTTACCACGGGGA-TCAAGAA 1138
|||||||||||||||||||| |||||||||||||||||||||||||| || | |||||||
Sbjct 1020 ATGGAAAGCTCGAGAAGGTTAGGGATAAGGCATAAAGTTTTTACCACAGG-ACTCAAGAA 1078
Query 1139 AGCAGATATTGCTTGTTTGACAAGCAACGCTGGTTTATTTGCGTGGATGGATTTGAGACA 1198
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 AGCAGATATTTCTTGTTTGACAAGCAACGCAGGTTTATTTGCGTGGATGGATTTGAGACA 1138
Query 1199 TCTACTGAGAGATCGTAACTCGTTTGAATCTGAGATCGAGCTTTGGCATATAATCATCGA 1258
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCTATTGAGAGATCGTAACTCGTTTGAATCTGAGATCGAGCTTTGGCATATAATCATCGA 1198
Query 1259 TAGAGTTAAGCTCAATGTGTCTCCTGGCTCTTCCTTCCGTTGCACGGAACCTGGATGGTT 1318
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TAAAGTTAAGCTCAATGTGTCTCCTGGCTCTTCCTTCCGTTGCACGGAACCTGGATGGTT 1258
Query 1319 TAGGATTTGCTTTGCCAACATGGACGATGATACTCTCCATGTGGCGCTTGGACGGATCCA 1378
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1259 TAGGGTTTGCTTTGCCAACATGGACGATGATACTCTCCACGTGGCGCTTGGACGAATCCA 1318
Query 1379 AGATTTCGTGTCTAAGAACAAGAACAAGATCGTCGAGAAAGCATCTGAAAATGATCAGGT 1438
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1319 AGATTTCGTGTCTAAGAACAACAACAAGATCGTTGAGAAAGCATCTGAAAATGATCAGGT 1378
Query 1439 AATCCAGAACAAGAGTGCTAAAAAGCTGAAATGGACGCAGACCAATCTTCGACTAAGTTT 1498
|||||||||||| | ||||||||||| ||| |||| ||||| |||||| |||||||||||
Sbjct 1379 AATCCAGAACAACAATGCTAAAAAGCAGAATTGGAGGCAGAGCAATCTCCGACTAAGTTT 1438
Query 1499 CCGACGACTTTACGAGGATGGTCTCTCGTCTCCAGGGATAATGTCACCACACTCACCTCT 1558
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1439 CCGTCGACTTTACGAGGATGGTCTCTCGTCGCCAGGGATAATGTCACCACACTCACCTCT 1498
Query 1559 TCTCCGAGCATGAAAATCTTAAGGCATAACGTCTG 1593
||||||||||||||| ||||||||||||||| |||
Sbjct 1499 TCTCCGAGCATGAAA-TCTTAAGGCATAACGCCTG 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72142924030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5