BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01480.1 Length=1920 Score E Sequences producing significant alignments: (Bits) Value Ahg918815 jgi|Araly1|918815|scaffold_100096.1 2425 0.0 > Ahg918815 jgi|Araly1|918815|scaffold_100096.1 Length=1532 Score = 2425 bits (1313), Expect = 0.0 Identities = 1462/1535 (95%), Gaps = 5/1535 (0%) Strand=Plus/Plus Query 61 AGTGAGAATTGACACAGCAAATGGGTCTTCCGGGAAAAAATAAAGGTGCAG-TTTTGTCG 119 |||| ||||| | |||||||||||||||||||| ||||||||||||||| | |||||||| Sbjct 1 AGTGGGAATTAAAACAGCAAATGGGTCTTCCGGCAAAAAATAAAGGTGC-GATTTTGTCG 59 Query 120 AAGATAGCGACTAACAATCAACACGGAGAGAACTCAGAGTACTTTGATGGATGGAAAGCT 179 ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 60 AAGATAGCGACTAACGATCAACATGGAGAGAACTCAGAGTATTTTGATGGATGGAAAGCT 119 Query 180 TACGACAAAGATCCTTTTCATCTTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTT 239 ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 120 TACGACAAAGATCCTTTCCATCTTTCCCGTAACCCTCATGGGATTATCCAAATGGGTCTT 179 Query 240 GCAGAGAATCAGCTTTGCTTAGATTTGATCAAAGATTGGGTCAAAGAGAACCCAGAAGCT 299 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 180 GCAGAGAATCAGCTTTGCTTAGATTTGATCAAAGATTGGGTCATGGAGAATCCAGAAGCT 239 Query 300 TCTATTTGCACCCTTGAAGGTATTCATCAGTTTAGCGACATCGCTAATTTCCAAGACTAC 359 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 TCTATTTGCACCCTTGAAGGTGTTCATCAGTTTAGCGACATCGCTAATTTCCAAGACTAC 299 Query 360 CATGGTCTTAAGAAGTTTAGACAGGCAATTGCACATTTCATGGGAAAAGCTAGAGGTGGA 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CATGGTCTTAAGAAGTTTAGACAGGCAATTGCACATTTCATGGGAAAAGCTAGAGGTGGA 359 Query 420 AGAGTGACTTTTGATCCGGAGAGGGTGGTTATGAGCGGAGGAGCCACCGGAGCCAATGAA 479 |||||||| |||||||||||||||| |||||||||||| || |||||||||||||||||| Sbjct 360 AGAGTGACATTTGATCCGGAGAGGGAGGTTATGAGCGGCGGCGCCACCGGAGCCAATGAA 419 Query 480 ACAATCATGTTCTGCCTTGCGGATCCCGGCGACGTTTTCCTCATTCCCTCCCCGTACTAT 539 ||||| |||||||||||||| ||||||||||||||||||||||||||||| || || ||| Sbjct 420 ACAATTATGTTCTGCCTTGCCGATCCCGGCGACGTTTTCCTCATTCCCTCTCCTTATTAT 479 Query 540 GCCGCATTTGATAGAGACTTGAGGTGGCGGACAGGTGTCGAGATAATCCCGGTTCCTTGT 599 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 480 GCTGCATTTGATAGAGACTTGAGGTGGCGTACAGGTGTCGAGATAATCCCGGTTCCTTGT 539 Query 600 TCAAGCTCCGACAATTTCAAATTAACCGTTGACGCCGCGGAATGGGCTTATAAAAAAGCC 659 ||||||||| |||||||||||||||||||||| |||| ||| |||||||||||||| ||| Sbjct 540 TCAAGCTCCAACAATTTCAAATTAACCGTTGAGGCCGTGGACTGGGCTTATAAAAAGGCC 599 Query 660 CAAGAGTCCAATAAAAAAGTCAAAGGTCTGATTTTGACCAACCCATCAAATCCACTCGGT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CAAGAGTCCAATAAAAAAGTCAAAGGTCTGATTTTGACCAACCCATCAAATCCACTCGGT 659 Query 720 ACAATGTTGGATAAGGACACACTCACGAACTTGGTCCGGTTTGTCACGAGGAAGAACATT 779 || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 660 ACGATGTTGGATAAGGACACACTCACGAACTTAGTCCGGTTCGTCACGAGGAAGAACATT 719 Query 780 CACCTAGTCGTCGACGAGATCTACGCCGCCACAGTCTTCGCCGGAGGAGATTTCGTGAGC 839 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 720 CACCTAGTCGTCGACGAGATCTATGCCGCCACAGTCTTCGCCGGAGGAGATTTTGTAAGC 779 Query 840 GTTGCTGAGGTGGTCAATGATGTGGACATCTCCGAAGTCAACGTTGACTTGATTCACATT 899 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 780 GTTGCTGAGGTGGTCAACGATGTGGACATCTCTGAAGTCAACGTTGACTTGATTCACATT 839 Query 900 GTCTATAGTCTTTCTAAAGATATGGGACTTCCTGGTTTTAGAGTCGGGATAGTCTATTCT 959 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 840 GTCTATAGTCTTTCTAAAGACATGGGACTTCCTGGTTTTAGAGTCGGGATAGTCTATTCT 899 Query 960 TTCAATGACTCGGTCGTGTCTTGCGCAAGAAAAATGTCAAGTTTCGGACTTGTTTCGTCT 1019 | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 900 TACAATGACTCGGTCGTCTCTTGCGCAAGAAAAATGTCGAGTTTCGGACTTGTTTCGTCT 959 Query 1020 CAGACACAACTCATGCTTGCTTCGATGTTGTCCGATGATCAGTTTGTGGATAATTTTCTA 1079 |||||||||||||||||||||||||||||||| ||||||| |||||| || |||||||| Sbjct 960 CAGACACAACTCATGCTTGCTTCGATGTTGTCAGATGATCGGTTTGTAGAAAATTTTCTT 1019 Query 1080 ATGGAAAGCTCGAGAAGGTTGGGGATAAGGCATAAAGTTTTTACCACGGGGA-TCAAGAA 1138 |||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||| Sbjct 1020 ATGGAAAGCTCGAGAAGGTTAGGGATAAGGCATAAAGTTTTTACCACAGG-ACTCAAGAA 1078 Query 1139 AGCAGATATTGCTTGTTTGACAAGCAACGCTGGTTTATTTGCGTGGATGGATTTGAGACA 1198 |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1079 AGCAGATATTTCTTGTTTGACAAGCAACGCAGGTTTATTTGCGTGGATGGATTTGAGACA 1138 Query 1199 TCTACTGAGAGATCGTAACTCGTTTGAATCTGAGATCGAGCTTTGGCATATAATCATCGA 1258 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 TCTATTGAGAGATCGTAACTCGTTTGAATCTGAGATCGAGCTTTGGCATATAATCATCGA 1198 Query 1259 TAGAGTTAAGCTCAATGTGTCTCCTGGCTCTTCCTTCCGTTGCACGGAACCTGGATGGTT 1318 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TAAAGTTAAGCTCAATGTGTCTCCTGGCTCTTCCTTCCGTTGCACGGAACCTGGATGGTT 1258 Query 1319 TAGGATTTGCTTTGCCAACATGGACGATGATACTCTCCATGTGGCGCTTGGACGGATCCA 1378 |||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1259 TAGGGTTTGCTTTGCCAACATGGACGATGATACTCTCCACGTGGCGCTTGGACGAATCCA 1318 Query 1379 AGATTTCGTGTCTAAGAACAAGAACAAGATCGTCGAGAAAGCATCTGAAAATGATCAGGT 1438 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1319 AGATTTCGTGTCTAAGAACAACAACAAGATCGTTGAGAAAGCATCTGAAAATGATCAGGT 1378 Query 1439 AATCCAGAACAAGAGTGCTAAAAAGCTGAAATGGACGCAGACCAATCTTCGACTAAGTTT 1498 |||||||||||| | ||||||||||| ||| |||| ||||| |||||| ||||||||||| Sbjct 1379 AATCCAGAACAACAATGCTAAAAAGCAGAATTGGAGGCAGAGCAATCTCCGACTAAGTTT 1438 Query 1499 CCGACGACTTTACGAGGATGGTCTCTCGTCTCCAGGGATAATGTCACCACACTCACCTCT 1558 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1439 CCGTCGACTTTACGAGGATGGTCTCTCGTCGCCAGGGATAATGTCACCACACTCACCTCT 1498 Query 1559 TCTCCGAGCATGAAAATCTTAAGGCATAACGTCTG 1593 ||||||||||||||| ||||||||||||||| ||| Sbjct 1499 TCTCCGAGCATGAAA-TCTTAAGGCATAACGCCTG 1532 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72142924030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5