BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01490.1

Length=1107
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918814 jgi|Araly1|918814|scaffold_100095.1                        911    0.0  


> Ahg918814 jgi|Araly1|918814|scaffold_100095.1
Length=578

 Score =  911 bits (493),  Expect = 0.0
 Identities = 547/574 (95%), Gaps = 0/574 (0%)
 Strand=Plus/Plus

Query  277  TAAAAAGCTGAGAGCAATGAAGAAAATTGTGTTAAAGCTGGATTTGCATGACGATAGGGC  336
            |||||| | |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct  5    TAAAAAACAGAGAGCAATGAAGAAAATTGTGTTAAAGCTGGATTTGCATGATGATAAGGC  64

Query  337  AAAACAAAAGGCCCTTAAAACGGTTTCTACTCTCCCAGGAATCGATTCCATTGCAATGGA  396
            ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  65   AAAACAAAAGGCCCTCAAAACTGTTTCTACTCTCCCAGGAATCGACTCCATTGCAATGGA  124

Query  397  CATGAAGGAGAAGAAATTGACGGTTATTGGAACCGTGGATCCGGTAAATGTAGTAAGTAA  456
            |||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct  125  CATGAAGGAGAAGAAATTAACGGTGATTGGAACTGTAGATCCGGTAAATGTAGTAAGTAA  184

Query  457  GCTAAGAAAGTATTGGCCGATGACGGATATCGTACTAGTGGGACCTGCGAAAGAGCCgga  516
            ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct  185  GCTAAGAAAGTATTGGCCGATGACGGATATCATACTAGTGGGACCTGCTAAAGAACCGGA  244

Query  517  aaaggagaagaaggaggagccgaagaaggaaggtggtggcgagccgccaaagaaagaagg  576
            ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  245  AAAGGAGAAGAAGGAAGAGCCGAAGAAGGAAGGTGGTGGCGAGCCGCCGAAGAAAGAAGG  304

Query  577  agaagctccaaaagaagaagggaaaaaggaaggagaagcaccgaagaaggaagaagagaa  636
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  305  GGAAGCTCCAAAAGAAGAAGGGAAAAAGGAAGGAGAAGCGCCGAAGAAGGAAGAAGAGAA  364

Query  637  gaaagaaggtggcgataagaaggaaggagagaagaaagaTCAACCACAAGCGCAGCCGCA  696
            |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct  365  GAAAGAAGGTGGTGATAAAAAGGAAGGAGAGAAGAAAGATCAACCACAACCGCAGCCGCA  424

Query  697  ACCAGTTGTGCCGCCACCTGATCATGTGTTGGAACTTGTAAAGGCGTATAAAGCATATAA  756
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  425  ACCAGTTGTGCCGCCACCGGATCATGTGTTGGAACTTGTAAAGGCGTATAAAGCATATAA  484

Query  757  TCCTCACCTAACAACGTATTACTACGCCCAAAGCATCGAAGAAAACCCTAATGCTTGCGT  816
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  485  TCCTCACCTAACAACGTATTACTACGCCCAAAGCATCGAAGAAAACCCTAATGCTTGCGT  544

Query  817  TATATGTTGAAATATTTATAATGTGATATATTTT  850
            |||||||||||| || |||||  | |||||||||
Sbjct  545  TATATGTTGAAAAATCTATAACATAATATATTTT  578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41248996194


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5