BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01510.1
Length=2155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311286 jgi|Araly1|311286|fgenesh1_pm.C_scaffold_1000066 3277 0.0
> Ahg311286 jgi|Araly1|311286|fgenesh1_pm.C_scaffold_1000066
Length=3747
Score = 3277 bits (1774), Expect = 0.0
Identities = 1863/1907 (98%), Gaps = 2/1907 (0%)
Strand=Plus/Plus
Query 7 AGCGAGAAGAAGGAGGAGATGAGCAAGATCCGTTCGTCTGCGACAATGCCACATCGCGAC 66
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 AGCGAGAAGAAGAAGGAGATGAGCAAGATCCGTTCGTCTGCGACAATGCCACATCGCGAC 1035
Query 67 CAGCCGTCACCGGCGTCGCCTCACGTCGTTACACTCAACTGTATAGAGGATTGTGCGCTC 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CAGCCGTCACCGGCGTCGCCTCACGTCGTTACACTCAACTGTATAGAGGATTGTGCGCTC 1095
Query 127 GAGCAAGACTCCCTCGCCGGCGTTGCTGGTGTCGAATACGTCCCGCTCAGCCGCATCGCC 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GAGCAAGACTCCCTCGCCGGCGTTGCTGGTGTCGAATACGTCCCGCTCAGCCGCATCGCC 1155
Query 187 GATGGTAAGATCGAGTCCGCCACCGCCGTTCTCCTCCATTCCCTCGCGTATCTTCCACGA 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GATGGTAAGATCGAGTCCGCCACCGCCGTTCTCCTCCATTCCCTCGCGTATCTTCCACGA 1215
Query 247 GCAGCTCAACGCCGACTCCGTCCTCACCAGCTCATTCTCTGCCTTGGCTCTGCTGATCGC 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GCAGCTCAACGCCGACTCCGTCCTCACCAGCTCATTCTCTGCCTTGGCTCTGCTGATCGC 1275
Query 307 GCTGTCGATTCGACTCTCGCCGCCGACCTAGGTCTCCGACTTGTCCATGTAGATACTTCA 366
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1276 GCTGTCGATTCGACTCTCGCCGCCGACCTAGGTCTCCGACTTGTCCATGTCGATACTTCC 1335
Query 367 CGAGCCGAGGAAATCGCGGATACCGTCATGGCGCTCATCCTTGGACTCCTTCGACGGACG 426
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1336 CGAGCCGAGGAAATCGCGGACACTGTAATGGCGCTCATCCTTGGACTCCTTCGACGGACG 1395
Query 427 CATTTACTCTCGCGACACGCTCTATCGGCGTCTGGTTGGCTCGGATCGCTTCAGCCTCTT 486
||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 1396 CATTTACTCTCGCGACACGCTTTATCGGCGTCTGGATGGCTTGGATCGCTTCAGCCTCTT 1455
Query 487 TGCCGGGGAATGAGACGGTGCCGTGGTATGGTTTTGGGTATCGTTGGCAGATCTGTATCG 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1456 TGCCGGGGAATGAGACGGTGCCGTGGTATGGTTTTGGGTATCGTTGGCAGATCTGTGTCT 1515
Query 547 GCTCGGTATTTAGCTAGTAGAAGCTTGGCTTTCAAGATGAGTGTGCTCTACTTCGATGTC 606
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1516 GCTCGGTATTTGGCTAGTAGAAGCTTAGCTTTCAAGATGAGTGTGCTCTACTTCGATGTC 1575
Query 607 CCAGAGGGAGATGAAGAACGAATCAGGCCCTCGAGATTCCCACGTGCTGCTCGAAGAATG 666
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1576 CCAGAGGGAGATGAAGATCGAATCAGGCCCTCGAGATTCCCACGTGCTGCTCGGAGAATG 1635
Query 667 GATACATTGAATGATCTTCTAGCAGCAAGTGATGTCATTTCGCTACATTGTGCATTAACA 726
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1636 GATACATTGAATGATCTTCTAGCAGCAAGTGATGTAATTTCGCTTCATTGTGCATTAACA 1695
Query 727 AATGACACGGTTCAGATACTCAATGCAGAGTGTTTGCAGCATATAAAACCTGGGGCTTTT 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 AATGACACGGTTCAGATACTCAATGCAGAGTGTTTGCAGCATATAAAACCTGGGGCTTTT 1755
Query 787 CTTGTAAATACTGGAAGCTGCCAGCTGTTGGATGATTGTGCTGTGAAACAACTTCTAATT 846
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1756 CTTGTAAATACTGGAAGCTGCCAGCTATTGGATGATTGTGCTGTGAAACAACTTCTAATT 1815
Query 847 GATGGCACTATAGCTGGCTGCGCCCTTGACGGTGCTGAAGGTCCACAATGGATGGAAGCA 906
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816 GACGGCACTATAGCTGGCTGCGCCCTTGACGGTGCTGAAGGTCCACAATGGATGGAAGCA 1875
Query 907 TGGGTGAAGGAAATGCCAAATGTGTTAATTCTACCTCGCAGTGCAGATTACAGTGAGGAA 966
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1876 TGGGTGAAGGAAATGCCAAATGTGTTAATTCTACCTCGCAGCGCAGATTACAGTGAGGAA 1935
Query 967 GTATGGATGGAGATAAGGGAGAAGGCTATCTCTATCTTGCATTCATTTTTCTTAGATGGT 1026
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1936 GTATGGATGGAGATAAGGGAGAAGGCCATCTCTATCTTGCATTCATTTTTCTTAGATGGT 1995
Query 1027 GTAATTCCAAGTAACACTGTTTCTGATGAGGAAGTTGAGGAAAGTGAAGCAAGTGAAGAA 1086
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1996 GTCATCCCAAGTAACACTGTTTCTGACGAGGAAGTTGAGGAAAGTGAAGCAAGTGAAGAA 2055
Query 1087 GAAGAACAATCACCTAGCAAACACGAGAAATTAGCAATAGTGGAATCCACCAGTAGGCAA 1146
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2056 GAAGAACAATCACCTATCAAACACGAGAAATTAGCAATAGTGGAATCCACCAGTAGGCAA 2115
Query 1147 CAGGGAGAAAGTACTCTCACCAGCACTGAGATCGTACGTAGAGAGGCTAGTGAGTTAAAA 1206
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2116 CAGGGAGAAAGTACTCTCACCAGCACTGAGATCGTTCGTAGAGAGGCTAGTGAGTTAAAG 2175
Query 1207 GAATCTCTGAGCCCTGGTCAGCAACACGTTTCTCAAAATACTGCCGTAAAACCTGAAGGA 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 GAATCTCTGAGCCCTGGTCAGCAACACGTTTCTCAAAATACTGCCGTAAAACCTGAAGGA 2235
Query 1267 AGACGTAGCAGATCCGGTAAGAAAGCCAAAAAGAGACATTCACAGCAAAAATACATGCAA 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2236 AGACGTAGCAGATCCGGTAAGAAAGCCAAAAAGAGACATTCACAGCAAAAATACATGCAA 2295
Query 1327 AAAACGGATGGTTCCTCAGGGTTAAATGAAGAAAGTACTTCACGAAGAGATGATATTGCT 1386
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2296 AAAGCGGAGGGTTCCTCAGGGTTAAATGAAGAAAGTACTTCACGAAGAGATGATATTGCT 2355
Query 1387 ATGAGTGACACAGAAGAAGTATTAAGTTCCAGTTCTAGATGTGCTTCTCCTGAAGATTCC 1446
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2356 ATGAGTGACACGGAAGAAGTATTAAGTTCCAGTTCTAGATGTGCTTCTCCTGAAGATTCC 2415
Query 1447 AGAAGTAGGAAAACACCTCTTGAAGTAATGCAAGAGTCTTCCCCAAATCAGCTTGTAATG 1506
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2416 AGAAGTAGGAAAACACCTCTTGAAGTAATGCAAGAGTCTTCCCCAAGTCAGCTTGTAATG 2475
Query 1507 TCAAGTAAGAAGTTCATTGGAAAGTCAAGTGAGCTACTGAAAGATGGATATGTAGTAGCC 1566
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2476 TCAAGTAAGAAGTTCATTGGAAAGTCAAGTGAGCTGCTGAAAGATGGATATGTTGTAGCC 2535
Query 1567 TTGTATGCGAAAGACCTCTCGGGCCTCCACGTTTCCAGGCAAAGAACGAAAAACGGTGGC 1626
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2536 TTATATGCGAAAGACCTCTCGGGCCTTCACGTTTCCAGGCAAAGAACGAAAAACGGGGGT 2595
Query 1627 TGGTTCCTCGATACTTTGTCCAATGTATCCAAACGAGATCCTGCTGCACAATTCATTATC 1686
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2596 TGGTTCCTCGATACTTTGTCCAATGTATCCAAACGGGATCCTGCTGCACAATTCATCATC 2655
Query 1687 GCATACAGAAACAAGGACACTGTTGGTCT-GAGATCATTTGCTGCTGGTGGGAAGTTACT 1745
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 2656 GCATACAGAAACAAGGACACTGTTGG-CTTGAGATCATTTGCTGCTGGTGGGAAGTTGCT 2714
Query 1746 GCAGATCAATAGAAGAATGGAGTTTGTGTTTGCTAGCCATAGTTTTGACGTGTGGGAGAG 1805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2715 GCAGATCAATAGAAGAATGGAGTTTGTGTTTGCTAGCCATAGTTTTGACGTGTGGGAGAG 2774
Query 1806 TTGGAGTCTAGAAGGTTCTCTGGACGAATGTCGGCTTGTTAACTGCAGGAATTCCTCTGC 1865
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2775 TTGGAGTCTAGAAGGTTCTCTGGACGAATGCCGGCTTGTTAACTGCAGGAATTCCTCTGC 2834
Query 1866 GGTGTTGGACGTTCGTGTGGAGATATTGGCAATGGTAGGAGACGATG 1912
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2835 GGTGTTGGACGTTCGTGTGGAAATATTGGCAATGGTAGGAGACGATG 2881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81094131605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5