BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01530.1 Length=752 Score E Sequences producing significant alignments: (Bits) Value Ahg909820 jgi|Araly1|909820|Al_scaffold_0001_74 787 0.0 Ahg908140 jgi|Araly1|908140|Al_scaffold_0002_1221 324 7e-88 > Ahg909820 jgi|Araly1|909820|Al_scaffold_0001_74 Length=744 Score = 787 bits (426), Expect = 0.0 Identities = 650/756 (86%), Gaps = 24/756 (3%) Strand=Plus/Plus Query 9 ATGGCGAGAAAGAATCTTGGTCGTAGAAAAATAGAG-TTGGTAAAAATGACCAACGAATC 67 |||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||| Sbjct 1 ATGGCGAGAAAGAATCTTGGCCGTAGAAAAATAGAGATT-GTGAAAATGACCAACGAATC 59 Query 68 AAACCTTCAAGTTACGTTTTCAAAAAGAAGATCTGGTCTTTTCAAAAAAGGCAGTGAACT 127 ||||||||||||||| |||||||| ||||||||||||||||| || |||| ||||||||| Sbjct 60 AAACCTTCAAGTTACATTTTCAAAGAGAAGATCTGGTCTTTTTAAGAAAGCCAGTGAACT 119 Query 128 TTGCACCTTATGTGACGCGGAAATTGCGATAATCGTGTTTTCACCCTCGGGAAAAGCATA 187 |||||| |||||||| || ||||||||||| ||||| |||||||| || ||||||| ||| Sbjct 120 TTGCACGTTATGTGATGCAGAAATTGCGATTATCGTCTTTTCACCATCTGGAAAAGTATA 179 Query 188 CTCTTTTGGTCATCCAAATGTTAACAAGTTACTTGACCACTCTTT-AGGGCGTGTTATAA 246 |||||||||||||||||||||||| |||||||| || | ||| || |||||| ||| Sbjct 180 CTCTTTTGGTCATCCAAATGTTAATGTTTTACTTGATCAAT-TTTCAGAACGTGTTCTAA 238 Query 247 GACACAACAACACAAACTTTGCTGAAAGCCGCACAAAGCTCCGTATTCAAATGCTCAATG 306 |||| |||||||||||| ||| |||||||| ||||||||||| |||||||||||||||| Sbjct 239 GACAAAACAACACAAACCTTGATGAAAGCCACACAAAGCTCCATATTCAAATGCTCAATC 298 Query 307 AGTCTTTAACTGAGGTGATGGCTGAAAAAGAAAAAGAACAAGAG-ACCAAGCAGTCAATA 365 |||| |||||||||| ||||||||||||||||||||||||| || | ||| ||| || Sbjct 299 AGTCCTTAACTGAGGCGATGGCTGAAAAAGAAAAAGAACAA-AGGAAAAAGGAGTGGCTA 357 Query 366 GTCCAAAATGAAAGAGAGAA-CAAGGACGCTGAGAAGTGGTGGAGGAACTCTCCAACAGA 424 ||||||||||||||||| || |||| ||| |||| ||||||||| ||||||| || ||| Sbjct 358 GTCCAAAATGAAAGAGA-AATCAAGAACGTTGAGGAGTGGTGGACAAACTCTCTAAAAGA 416 Query 425 ACTCAACTTAGCTCAATCAACTTCCATGAAATGTGATCTTGAAGCTTTGAAGAAGGAAGT 484 ||||||| || |||||| ||||||||||||| || |||||||| ||||||||||||||| Sbjct 417 ACTCAACCTAACTCAATTAACTTCCATGAAACATGCTCTTGAAGATTTGAAGAAGGAAGT 476 Query 485 TGATGAAAAAGTCGCTCAACTTCATCA-TAGAAAC-CTAAACTTCTATGTTGGAAGTTCT 542 | |||| | || | ||| ||||||| | |||| | ||||||||| || ||||||||| Sbjct 477 TAATGAGAGAGCCTCTCTGTTTCATCAATC-AAACTC-AAACTTCTACGTAGGAAGTTCT 534 Query 543 AGCAATGTTGCTGCTCCAGCAG-CTGTTAGTGGTGGTAATATCTCCACAAACCATGGTTT 601 ||||||| ||||||||||| || |||| | ||||||||||||||||| |||||| ||||| Sbjct 535 AGCAATGCTGCTGCTCCAG-AGGCTGTGAATGGTGGTAATATCTCCATAAACCAGGGTTT 593 Query 602 CTTTGA-TCAAAACGGAAA-CTCTACTTC-TGCTCCAACACTGCCGTTTGGATTTAATGT 658 |||| | |||||| |||| | ||||| | || || ||| |||||||||||||||||||| Sbjct 594 CTTT-ACTCAAAATGGAATGC-CTACT-CATGTTCAAACTCTGCCGTTTGGATTTAATGT 650 Query 659 TATGAATCGCACACCAGCTGGGTACAACAGTTACCAACTCCAAAACCAGGAGGTT-AAAC 717 |||||||||||| ||| | |||||||||| || |||| |||||||||||||| || |||| Sbjct 651 TATGAATCGCACCCCAACGGGGTACAACAATTGCCAAATCCAAAACCAGGAG-TTCAAAC 709 Query 718 AAGTCCATCCTCAGTATTGGGC-TCGTTACTATTAG 752 |||| |||||| | ||| |||| ||||||||||||| Sbjct 710 AAGTTCATCCTTATTAT-GGGCCTCGTTACTATTAG 744 > Ahg908140 jgi|Araly1|908140|Al_scaffold_0002_1221 Length=555 Score = 324 bits (175), Expect = 7e-88 Identities = 305/365 (84%), Gaps = 19/365 (5%) Strand=Plus/Plus Query 297 ATGCTCAATGAGTCTTTAACTGAGGTGATGGCTGAAAAAGAAAAAGAAC-AAGAGACCAA 355 ||||||||||| || ||||||||||||||||| |||||||||||||||| ||| || || Sbjct 199 ATGCTCAATGATTCCTTAACTGAGGTGATGGCCGAAAAAGAAAAAGAACAAAG-GAAGAA 257 Query 356 GCAG-TCAATAGTCCAAAATGAAAGAGAGAACAAGGACGCTGAGAAGTGGT-GGAGGAAC 413 || | || ||||||||||||||||||| |||||| ||||||||||||||| ||| || Sbjct 258 GC-GTTCGTTAGTCCAAAATGAAAGAGAAAACAAGAACGCTGAGAAGTGGTGGGA-AAAA 315 Query 414 TCTCCAACAGAACTCAACTTAGCTCAATCAACTTCCATGAAATGTGATCTTGAAGCTTTG 473 ||||||| ||||||||| ||| |||||| ||| | |||||| || |||||||| |||| Sbjct 316 TCTCCAAAAGAACTCAAATTAACTCAATTAACATGTATGAAACATGTTCTTGAAGATTTG 375 Query 474 AAGAAGGAAGTTGATGAAA-AAGTCGCTC-AAC-TTCATCATAGAAACCTAAACT-TCTA 529 |||||| |||||| ||||| || | ||| || || ||| | ||||| ||||| | || Sbjct 376 AAGAAGAAAGTTGGTGAAATAA--C-CTCTTACGTTTTTCAGACAAACCCAAACTAT-TA 431 Query 530 TGTTGGAAGTTCTAGCAATGTTGCTGCTCCAGCAG-CTGTTAGTGGTGGTAATATCTCCA 588 ||| ||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||| Sbjct 432 TGTCGGAAGTTCTAGCAATGTTGCTTCTCTAGC-GACTGTTAGTGGTGGTAATATCTCCA 490 Query 589 CAAACCATGGTTTCTTTGATCAAAACGGAAACTCTACTTCTGCTCCAAC-ACTGCCGTTT 647 |||||||| |||||||||||||||||||| | || || || || ||| | |||||||| Sbjct 491 CAAACCATAATTTCTTTGATCAAAACGGAATCCCT-CTCCTTTTCAAACGA-TGCCGTTT 548 Query 648 GGATT 652 ||||| Sbjct 549 GGATT 553 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27715360659 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5