BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01530.1
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909820 jgi|Araly1|909820|Al_scaffold_0001_74 787 0.0
Ahg908140 jgi|Araly1|908140|Al_scaffold_0002_1221 324 7e-88
> Ahg909820 jgi|Araly1|909820|Al_scaffold_0001_74
Length=744
Score = 787 bits (426), Expect = 0.0
Identities = 650/756 (86%), Gaps = 24/756 (3%)
Strand=Plus/Plus
Query 9 ATGGCGAGAAAGAATCTTGGTCGTAGAAAAATAGAG-TTGGTAAAAATGACCAACGAATC 67
|||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||
Sbjct 1 ATGGCGAGAAAGAATCTTGGCCGTAGAAAAATAGAGATT-GTGAAAATGACCAACGAATC 59
Query 68 AAACCTTCAAGTTACGTTTTCAAAAAGAAGATCTGGTCTTTTCAAAAAAGGCAGTGAACT 127
||||||||||||||| |||||||| ||||||||||||||||| || |||| |||||||||
Sbjct 60 AAACCTTCAAGTTACATTTTCAAAGAGAAGATCTGGTCTTTTTAAGAAAGCCAGTGAACT 119
Query 128 TTGCACCTTATGTGACGCGGAAATTGCGATAATCGTGTTTTCACCCTCGGGAAAAGCATA 187
|||||| |||||||| || ||||||||||| ||||| |||||||| || ||||||| |||
Sbjct 120 TTGCACGTTATGTGATGCAGAAATTGCGATTATCGTCTTTTCACCATCTGGAAAAGTATA 179
Query 188 CTCTTTTGGTCATCCAAATGTTAACAAGTTACTTGACCACTCTTT-AGGGCGTGTTATAA 246
|||||||||||||||||||||||| |||||||| || | ||| || |||||| |||
Sbjct 180 CTCTTTTGGTCATCCAAATGTTAATGTTTTACTTGATCAAT-TTTCAGAACGTGTTCTAA 238
Query 247 GACACAACAACACAAACTTTGCTGAAAGCCGCACAAAGCTCCGTATTCAAATGCTCAATG 306
|||| |||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 239 GACAAAACAACACAAACCTTGATGAAAGCCACACAAAGCTCCATATTCAAATGCTCAATC 298
Query 307 AGTCTTTAACTGAGGTGATGGCTGAAAAAGAAAAAGAACAAGAG-ACCAAGCAGTCAATA 365
|||| |||||||||| ||||||||||||||||||||||||| || | ||| ||| ||
Sbjct 299 AGTCCTTAACTGAGGCGATGGCTGAAAAAGAAAAAGAACAA-AGGAAAAAGGAGTGGCTA 357
Query 366 GTCCAAAATGAAAGAGAGAA-CAAGGACGCTGAGAAGTGGTGGAGGAACTCTCCAACAGA 424
||||||||||||||||| || |||| ||| |||| ||||||||| ||||||| || |||
Sbjct 358 GTCCAAAATGAAAGAGA-AATCAAGAACGTTGAGGAGTGGTGGACAAACTCTCTAAAAGA 416
Query 425 ACTCAACTTAGCTCAATCAACTTCCATGAAATGTGATCTTGAAGCTTTGAAGAAGGAAGT 484
||||||| || |||||| ||||||||||||| || |||||||| |||||||||||||||
Sbjct 417 ACTCAACCTAACTCAATTAACTTCCATGAAACATGCTCTTGAAGATTTGAAGAAGGAAGT 476
Query 485 TGATGAAAAAGTCGCTCAACTTCATCA-TAGAAAC-CTAAACTTCTATGTTGGAAGTTCT 542
| |||| | || | ||| ||||||| | |||| | ||||||||| || |||||||||
Sbjct 477 TAATGAGAGAGCCTCTCTGTTTCATCAATC-AAACTC-AAACTTCTACGTAGGAAGTTCT 534
Query 543 AGCAATGTTGCTGCTCCAGCAG-CTGTTAGTGGTGGTAATATCTCCACAAACCATGGTTT 601
||||||| ||||||||||| || |||| | ||||||||||||||||| |||||| |||||
Sbjct 535 AGCAATGCTGCTGCTCCAG-AGGCTGTGAATGGTGGTAATATCTCCATAAACCAGGGTTT 593
Query 602 CTTTGA-TCAAAACGGAAA-CTCTACTTC-TGCTCCAACACTGCCGTTTGGATTTAATGT 658
|||| | |||||| |||| | ||||| | || || ||| ||||||||||||||||||||
Sbjct 594 CTTT-ACTCAAAATGGAATGC-CTACT-CATGTTCAAACTCTGCCGTTTGGATTTAATGT 650
Query 659 TATGAATCGCACACCAGCTGGGTACAACAGTTACCAACTCCAAAACCAGGAGGTT-AAAC 717
|||||||||||| ||| | |||||||||| || |||| |||||||||||||| || ||||
Sbjct 651 TATGAATCGCACCCCAACGGGGTACAACAATTGCCAAATCCAAAACCAGGAG-TTCAAAC 709
Query 718 AAGTCCATCCTCAGTATTGGGC-TCGTTACTATTAG 752
|||| |||||| | ||| |||| |||||||||||||
Sbjct 710 AAGTTCATCCTTATTAT-GGGCCTCGTTACTATTAG 744
> Ahg908140 jgi|Araly1|908140|Al_scaffold_0002_1221
Length=555
Score = 324 bits (175), Expect = 7e-88
Identities = 305/365 (84%), Gaps = 19/365 (5%)
Strand=Plus/Plus
Query 297 ATGCTCAATGAGTCTTTAACTGAGGTGATGGCTGAAAAAGAAAAAGAAC-AAGAGACCAA 355
||||||||||| || ||||||||||||||||| |||||||||||||||| ||| || ||
Sbjct 199 ATGCTCAATGATTCCTTAACTGAGGTGATGGCCGAAAAAGAAAAAGAACAAAG-GAAGAA 257
Query 356 GCAG-TCAATAGTCCAAAATGAAAGAGAGAACAAGGACGCTGAGAAGTGGT-GGAGGAAC 413
|| | || ||||||||||||||||||| |||||| ||||||||||||||| ||| ||
Sbjct 258 GC-GTTCGTTAGTCCAAAATGAAAGAGAAAACAAGAACGCTGAGAAGTGGTGGGA-AAAA 315
Query 414 TCTCCAACAGAACTCAACTTAGCTCAATCAACTTCCATGAAATGTGATCTTGAAGCTTTG 473
||||||| ||||||||| ||| |||||| ||| | |||||| || |||||||| ||||
Sbjct 316 TCTCCAAAAGAACTCAAATTAACTCAATTAACATGTATGAAACATGTTCTTGAAGATTTG 375
Query 474 AAGAAGGAAGTTGATGAAA-AAGTCGCTC-AAC-TTCATCATAGAAACCTAAACT-TCTA 529
|||||| |||||| ||||| || | ||| || || ||| | ||||| ||||| | ||
Sbjct 376 AAGAAGAAAGTTGGTGAAATAA--C-CTCTTACGTTTTTCAGACAAACCCAAACTAT-TA 431
Query 530 TGTTGGAAGTTCTAGCAATGTTGCTGCTCCAGCAG-CTGTTAGTGGTGGTAATATCTCCA 588
||| ||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||
Sbjct 432 TGTCGGAAGTTCTAGCAATGTTGCTTCTCTAGC-GACTGTTAGTGGTGGTAATATCTCCA 490
Query 589 CAAACCATGGTTTCTTTGATCAAAACGGAAACTCTACTTCTGCTCCAAC-ACTGCCGTTT 647
|||||||| |||||||||||||||||||| | || || || || ||| | ||||||||
Sbjct 491 CAAACCATAATTTCTTTGATCAAAACGGAATCCCT-CTCCTTTTCAAACGA-TGCCGTTT 548
Query 648 GGATT 652
|||||
Sbjct 549 GGATT 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27715360659
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5