BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01550.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470124 jgi|Araly1|470124|fgenesh2_kg.1__78__AT1G01550.1 1975 0.0
> Ahg470124 jgi|Araly1|470124|fgenesh2_kg.1__78__AT1G01550.1
Length=1386
Score = 1975 bits (1069), Expect = 0.0
Identities = 1276/1373 (93%), Gaps = 26/1373 (2%)
Strand=Plus/Plus
Query 13 ATCTGCAGAAATACGGCAACTTTTGTGGTTAGTCATATAAGAACAACCGCGTTACAAACT 72
|||||||||||||||||||| |||||| |||||||||| ||||||| |||||| ||||||
Sbjct 1 ATCTGCAGAAATACGGCAAC-TTTGTGTTTAGTCATATTAGAACAA-CGCGTTTCAAACT 58
Query 73 TCTCTCGTCTTTCCTGGAAATTTCTGTCCACAAATATT--A-GTCTTTAATTTTCGAAAC 129
|||||| ||||||||||||||| ||||||||||||||| | | |||||||||||| ||
Sbjct 59 TCTCTCATCTTTCCTGGAAATTCCTGTCCACAAATATTACACGCCTTTAATTTTCG--AC 116
Query 130 TTCTCTCAG--GCGAATTCAAGTTTCATAGTTTTGGTCTAGTTTTTGTCCACCGATCTAT 187
||| |||| |||||||||||||||||| ||| ||||||||| |||||||
Sbjct 117 CTCTATCAGTCGCGAATTCAAGTTTCATA------GTC-----TTTGTCCACGGATCTAT 165
Query 188 CTCTTTAGTTGAAACTTATCAGAATGGCTCGTCCACAAGACCCTCCACGTGGTTTCTTCC 247
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 166 CTCTTTAGTTGAAACTTATCTGAATGGCTCGTCCACAAGACCCTCCACGCGGTTTCTTCC 225
Query 248 CTTTTGGAAACCCCTTCAAAAATCTATCTTCGAAGAACTCGGTACTCTCCTCAAAGCTTC 307
||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||
Sbjct 226 CTTTTGGAAACCCTTTCAAGAATCTATCTTCAAAGAACTCGGTACTCTCCCCAAAGCTTC 285
Query 308 TCCCACTCCTGAACAATTTTGAGACCAACTTAGCATCTTCTATTAGTAAGCTTGTCCCTA 367
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 286 TCTCACTCTTGAACAATTTTGAGACCAACTTAGCATCTTCTATTAGTAAGCTGGTCCCTA 345
Query 368 AGGAAAAGAGCGATATCCTGACTGTCTCATGGATGAAACAAGCTATGGAATCTCTTTGCG 427
||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 346 AGGAAAAGAGCGAAATCCTGACTGTTTCATGGATGAAACAAGCCATGAAATCTCTTTGCG 405
Query 428 AGACACATAATGGTATCAAGACCCTTATAACCGATCTTGAGCTTCCTGTATCAGATTGGG 487
||||||| ||||||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 406 AGACACACAATGGTATCAAGACCCTTATAACCGATCTAGAGCTGCCAGTTTCAGATTGGG 465
Query 488 AGGATAAATGGGTTGATGTCTATCTTGACATTAGTGTGAAGCTTCTTGATCTCTGCAATG 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AGGATAAATGGGTTGATGTCTATCTTGACATTAGTGTGAAGCTTCTTGATCTCTGCAATG 525
Query 548 CCTTTAGCTCTGAGCTTACCCGTCTCAACCAAGGTCATCTCTTACTCCAGTTTGCTCTGC 607
|||||||||||||||| || ||||||||||| |||||||||||||||||||||||| |||
Sbjct 526 CCTTTAGCTCTGAGCTAACTCGTCTCAACCAGGGTCATCTCTTACTCCAGTTTGCTTTGC 585
Query 608 ATAACTTGGAGGCCAACTCTCCTCAGAATCTGTCGAAAGCTCAGTCATCACTAGACAGTT 667
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 586 ATAACTTGGAGGCAAACTCTCCTCAGAATCTGTCGAAAGCTCAATCATCACTAGACAGCT 645
Query 668 GGAAGCAACACATTGTCTCCAAGAACCCGAGAATAGAAAATTGCCGTGCAATCTTGAGCA 727
|||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 646 GGAAGCAACACATTGTTTCCAAGAACCCAAGAATCGAAAATTGCCGCGCAATCTTGAGCA 705
Query 728 GCCTTGTTCAGACCTTGAATCTCCCCAAGGTGAAAAACTCGGCCAAAGGGAAAGTCTTGA 787
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 706 GCCTTGTTCAGACCTTGAATCTCCCCAAGGTGAAAAACTCGGCTAAAGGGAAAGTCTTGA 765
Query 788 TGAGAGCTCTATATGGTGTAAAGGTTAAGACCTTATACATCTCTGGTGTTTTTGCTGCAG 847
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TGAGAGCTCTATACGGTGTAAAGGTTAAGACCTTATACATCTCTGGTGTTTTTGCTGCAG 825
Query 848 CGTTCTCAGGTTCATCGCAGAATCTGATGTACCTTACAGTCTCAAACGAGCTTCCATGGG 907
| |||||||||||||||||||||||||||||||| || |||||| ||||||| |||||||
Sbjct 826 CATTCTCAGGTTCATCGCAGAATCTGATGTACCTAACCGTCTCACACGAGCTCCCATGGG 885
Query 908 CACAATCATTCATGGAAGTGCAGAACACCATGAACGCAGAAATCAAGAACATATTTTTGT 967
||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| |
Sbjct 886 CACAATCCTTCATGGAAATGCAGAACACCATGAACGCGGAAATCAAGAACATATTTTTAT 945
Query 968 CAGACGGGTTAACGGTTCTGAAAGAGCTAGAGGCAGTTGCTTCAGGTGTCAAGAAACTCT 1027
|||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 946 CAGACGGGTTAACGGTTCTGAAAGAGCTCGAGGCAGTTGATTCAGGTGTTAAGAAACTCT 1005
Query 1028 ACCCTGCGATCCAACAAGGATCAATAGATCCCATATCGCTGCAGCCACTGAAGGACTCGG 1087
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1006 ACCCTGCGATCCAACAAGGATCAATAGATCCCATATCCCTGCAGCCACTGAGGGACTCGG 1065
Query 1088 TCACAGAATTATCGAATGGGATAGATCTTGTTTCGAAAGAAGTGGATTGTTTCTTCAAGA 1147
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1066 TCACAGAATTATCGAATGGGCTAGATCTTGTTTCGAAAGAAGTCGATTGTTTCTTCAAGA 1125
Query 1148 TTCTGTTATCGGGGAGAGACACATTACTAGAGAACCTAAGGTCGATGGGTGCATCAACCC 1207
|||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1126 TTCTGTTAACGGGGCGAGACACATTACTAGAGAACCTCAGGTCGATAGGTGCATCAACCC 1185
Query 1208 TACAGGCAACATCGCCAAAAAAGGCTGCCGGAAAAAATTACAGAGGATTCTGATAAACTA 1267
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1186 TACAGGCAACATCGCCAAAAAAGGCTGCCGGAAAAAATTACAGAGGATTCTGATAAACAA 1245
Query 1268 -TAAATGTTTGTACAGATGGTTTTACTTCAAGTGTTCCATCTTCTTGGTATTGAATGTAT 1326
|| ||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1246 GTAT-TGTGTGTATAGATGGTTTAACTTTAAGTGTTCCATCTTCTTGGTATTGAATGTAT 1304
Query 1327 TATTAGGT-TT-TTGTGCAATCGTAGTCGTTTGTATGAGATGCTTTGAAAGTA 1377
||||| | || || | | || ||||||||||||||||||||||||||||||
Sbjct 1305 TATTAT-TATTATTATT-AGTCTTAGTCGTTTGTATGAGATGCTTTGAAAGTA 1355
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1400 TACCAACTTATCTATATATATTATGAATATCTT 1432
|||||||||||||||||||||||||||||||||
Sbjct 1354 TACCAACTTATCTATATATATTATGAATATCTT 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5