BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01560.2
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918805 jgi|Araly1|918805|scaffold_100086.1 1284 0.0
Ahg943609 jgi|Araly1|943609|scaffold_604153.1 1192 0.0
Ahg322261 jgi|Araly1|322261|fgenesh1_pm.C_scaffold_4002318 623 1e-177
> Ahg918805 jgi|Araly1|918805|scaffold_100086.1
Length=1205
Score = 1284 bits (695), Expect = 0.0
Identities = 758/788 (96%), Gaps = 6/788 (1%)
Strand=Plus/Plus
Query 190 ttGTTGGGAGAAAGAGAGAAATGTCAATAGAGA-AACCATTCTTCGGTGATGACAGCAAC 248
||||||| || |||||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct 1 TTGTTGGAAGGAAGAGAGAAATGTCGATAGAGACAA-CATTCTTCGGTGATGACAGCAAC 59
Query 249 AGAGGAGTAAGTATCAATGGTGGTCGTTATGTGCAGTATAATGTCTATGGAAATCTCTTT 308
|||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 60 AGAGGAGTGAGTATCAACGGTGGTCGTTATGTTCAGTATAATGTCTATGGAAACCTCTTC 119
Query 309 GAAGTTTCT-AAAAAGTATGTTCCTCCTCTTCGTCCTATCGGCAGAGGCGCTTCTGGCAT 367
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAGTTTCTCAAAAA-TATGTTCCTCCTCTTCGTCCTATCGGCAGAGGCGCTTCTGGCAT 178
Query 368 CGTCTGTGCTGCATGGAATTCGGAGACGGGTGAGGAAGTAGCGATCAAGAAGATTGGTAA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGTCTGTGCTGCATGGAATTCGGAGACGGGTGAGGAAGTAGCGATCAAGAAGATTGGTAA 238
Query 428 TGCATTTGGCAACATTATCGACGCTAAGAGAACTTTGAGAGAGATTAAGCTTCTTAAGCA 487
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGCTTTTGGCAACATTATCGACGCTAAGAGAACTTTGAGAGAGATTAAGCTTCTTAAGCA 298
Query 488 TATGGATCATGACAATGTCATTGCCATTATAGACATAATAAGACCACCTCAGCCAGACAA 547
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 299 TATGGATCATGACAATGTCATTGCCATTAAAGACATAATAAGACCACCGCAGCCAGACAA 358
Query 548 CTTCAATGATGTTCACATTGTCTATGAGTTAATGGACACTGATCTTCACCACATTATCCG 607
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 359 CTTCAATGATGTTCACATTGTCTATGAGTTAATGGACACTGATCTTCATCACATTATACG 418
Query 608 CTCTAACCAACCGTTAACTGATGATCATTCACGGTTCTTCCTGTATCAGTTGTTGCGAGG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 CTCTAACCAACCGTTAACTGATGATCATTCACGGTTCTTCCTGTATCAGTTGTTGAGAGG 478
Query 668 CCTCAAGTATGTGCATTCAGCCAATGTACTGCATCGTGATTTAAAACCGAGTAACTTGCT 727
|||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct 479 ACTCAAGTATGTGCATTCAGCTAATGTATTGCATCGTGATTTAAAACCAAGTAACTTGCT 538
Query 728 CCTGAATGCAAACTGTGACCTCAAGATTGGGGATTTTGGGCTTGCGAGGACTAAATCAGA 787
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 539 CCTGAATGCAAATTGTGACCTCAAGATTGGGGATTTTGGGCTTGCAAGGACTAAATCAGA 598
Query 788 GACAGACTTCATGACAGAATATGTTGTTACACGTTGGTACCGAGCTCCAGAGTTGCTCCT 847
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 599 GACAGACTTCATGACAGAATATGTCGTTACACGTTGGTACCGAGCTCCAGAGTTACTCCT 658
Query 848 TAATTGCTCAGAATACACTGCAGCTATCGACATTTGGTCTGTCGGTTGTATACTCGGTGA 907
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 659 TAATTGCTCAGAATACACTGCAGCTATCGATATTTGGTCTGTCGGTTGTATACTCGGTGA 718
Query 908 AATAATGACGCGG-GAGCCGTTATTTCCGGGCAGAGATTATGTTCAGCAGCTTAGACTCA 966
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AATAATGAC-CAGAGAGCCGTTATTTCCGGGCAGAGATTATGTTCAGCAGCTTAGACTCA 777
Query 967 TCACTGAG 974
||||||||
Sbjct 778 TCACTGAG 785
Score = 586 bits (317), Expect = 1e-166
Identities = 335/344 (97%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 973 AGCTTATAGGCTCACCAGATGATTCAAGCCTAGGATTCTTAAGAAGCGACAACGCTAGAA 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 829 AGCTTATAGGCTCACCAGATGATTCAAGCCTAGGATTCTTAAGAAGCGACAACGCAAGAA 888
Query 1033 GATACGTAAGACAGCTTCCACAGTATCCAAGACAAAACTTTGCCGCTAGATTCCCAAACA 1092
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GATATGTAAGACAGCTTCCACAGTATCCAAGACAAAACTTTGCCGCTAGATTCCCAAACA 948
Query 1093 TGTCGGTCAATGCTGTTGATTTGCTGCAGAAAATGCTCGTCTTTGACCCAAACAGACGCA 1152
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TGTCGGTTAATGCAGTTGATTTGCTGCAGAAAATGCTCGTCTTTGACCCAAACAGACGCA 1008
Query 1153 TTACAGTCGATGAAGCCTTGTGCCACCCTTACTTAGCACCGCTACACGAATATAACGAGG 1212
|||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1009 TTACAGTCGATGAAGCTTTGTCCCACCCTTACTTAGCACCGCTACACGAAAATAACGAGG 1068
Query 1213 AACCTGTGTGTGTGAGACCGTTCCATTTTGATTTCGAGCAACCTTCATTGACGGAAGAGA 1272
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1069 AACCTGTGTGTGTGAGACCGTTCCGTTTTGATTTCGAGCAACCTTCATTGACGGAAGAGA 1128
Query 1273 ACATCAAGGAGCTTATATATCGTGAATCAGTCAAGTTTAACCCT 1316
||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1129 ACATCAAGGAGCTTATATACCGTGAATCAGTCAAGTTTAACCCT 1172
> Ahg943609 jgi|Araly1|943609|scaffold_604153.1
Length=1171
Score = 1192 bits (645), Expect = 0.0
Identities = 946/1093 (87%), Gaps = 13/1093 (1%)
Strand=Plus/Plus
Query 231 TTC-GGTGATGACAGCAACAGAGGAGTAAGTA-TCAATGGTGGTCGTTATGTGCAGTATA 288
||| |||||| | |||| || |||| | || || |||||||| | ||||| |||||||
Sbjct 49 TTCAGGTGATCAAAGCAGCAAAGGATTGCCTACTC-ATGGTGGTAGCTATGTTCAGTATA 107
Query 289 ATGTCTATGGAAATCTCTTTGAAGTTTCTAAAAAGTATGTTCCTCCTCTTCGTCCTATCG 348
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||| ||||
Sbjct 108 ATGTCTATGGCAATCTCTTCGAAGTTTCTAGAAAGTATGTTCCTCCTCTTCGTCCCATCG 167
Query 349 GCAGAGGCGCTTCTGGCATCGTCTGTGCTGCAT-GGAATTCGGAGACGGGTGAGGAAGTA 407
| |||||||||| ||| || ||||||||||| | || || ||||| || |||||||||
Sbjct 168 GTAGAGGCGCTTATGGAATTGTCTGTGCTGC-TACAAACTCAGAGACTGGAGAGGAAGTA 226
Query 408 GCGATCAAGAAGATTGGTAATGCATTTGGCAACATTATCGACGCTAAGAGAACTTTGAGA 467
|| |||||||||||||||||||| |||| ||| |||||||| ||||| ||||||||||||
Sbjct 227 GCTATCAAGAAGATTGGTAATGCTTTTGACAATATTATCGATGCTAAAAGAACTTTGAGA 286
Query 468 GAGATTAAGCTTCTTAAGCATATGGATCATGACAATGTCATTGCCATTATA-GACATAAT 526
|||||||||||||| ||||||||||||||||| ||||| ||||| | | | || |||||
Sbjct 287 GAGATTAAGCTTCTCAAGCATATGGATCATGAAAATGTGATTGCTGTCA-AGGATATAAT 345
Query 527 AAGACCACCTCAGCCAGACAACTTCAATGATGTTCACATTGTCTATGAG-TTAATGGACA 585
|| |||||| ||| ||| ||||||||||||||| ||||||| |||||| || |||||||
Sbjct 346 AAAACCACCGCAGAGAGAGAACTTCAATGATGTTTACATTGTTTATGAGCTT-ATGGACA 404
Query 586 CTGATCTTCACCACATTATCCGCTCTAACCAACCGTTAACTGATGATCATTCACGGTTCT 645
||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 405 CTGATCTCCACCAAATTATACGCTCTAACCAACCGTTAACTGATGATCATTGTCGGTTTT 464
Query 646 TCCTGTATCAGTTGTTGCGAGGCCTCAAGTATGTGCATTCAGCCAATGTACTGCATCGTG 705
| ||||||||||||||||| |||||||| || || |||||||| |||||| |||| || |
Sbjct 465 TTCTGTATCAGTTGTTGCGTGGCCTCAAATACGTTCATTCAGCTAATGTATTGCACCGAG 524
Query 706 ATTTAAAACCGAGTAACTTGCTCCTGAATGCAAACTGTGACCTCAAGATTGGGGATTTTG 765
|||| ||||| || || ||||||||||||||||| ||||| || ||| |||||||||| |
Sbjct 525 ATTTGAAACCCAGCAATTTGCTCCTGAATGCAAATTGTGATCTAAAGCTTGGGGATTTCG 584
Query 766 GGCTTGCGAGGACTAAATCAGAGACAGACTTCATGACAGAATATGTTGTTACACGTTGGT 825
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 585 GGCTTGCGAGGACCAAATCTGAGACAGACTTCATGACTGAATATGTTGTTACACGTTGGT 644
Query 826 ACCGAGCTCCAGAGTTGCTCCTTAATTGCTCAGAATACACTGCAGCTATCGACATTTGGT 885
| |||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 645 ATCGAGCTCCAGAGCTGCTCCTTAATTGCTCAGAATACACAGCAGCAATCGATATTTGGT 704
Query 886 CTGTCGGTTGTATACTCGGTGAAATAATGACGCGGGAGCCGTTATTTCCGGGCAGAGATT 945
|||||||||||||||||||||||| |||||| || |||||||| ||||| || | |||||
Sbjct 705 CTGTCGGTTGTATACTCGGTGAAACAATGACACGAGAGCCGTTGTTTCCCGGTAAAGATT 764
Query 946 ATGTTCAGCAGCTTAGACTCATCACTGAGCTTATAGGCTCACCAGATGATTCAAGCCTAG 1005
||||||| ||||||||||||||||||||||| ||||| || || ||||| |||||| | |
Sbjct 765 ATGTTCATCAGCTTAGACTCATCACTGAGCTAATAGGATCGCCTGATGACTCAAGCTTGG 824
Query 1006 GATTCTTAAGAAGCGACAACGCTAGAAGATACGTAAGACAGCTTCCACAGTATCCAAGAC 1065
||||||||||||| ||||| || ||||||||||| ||||||||||| ||||| || ||||
Sbjct 825 GATTCTTAAGAAGTGACAATGCAAGAAGATACGTTAGACAGCTTCCGCAGTACCCGAGAC 884
Query 1066 AAAACTTTGCCGCTAGATTCCCAAACATGTCGG-TCAATGCTGTTGATTTGCTGCAGAAA 1124
| |||||||| |||||||||||||||||||||| | ||| || ||||| ||| |||||
Sbjct 885 AGAACTTTGCTGCTAGATTCCCAAACATGTCGGCTGG-TGCAGTCGATTTACTGGAGAAA 943
Query 1125 ATGCTCGTCTTTGACCCAAACAGACGCATTACAGTCGATGAAGCCTTGTGCCACCCTTAC 1184
||||| || ||||| |||| ||||||||| ||||| ||||| || ||||||||||| ||
Sbjct 944 ATGCTTGTTTTTGATCCAAGCAGACGCATCACAGTTGATGAGGCGTTGTGCCACCCATAT 1003
Query 1185 TTAGCACCGCTACACGAATATAA-CGAGGAACCTGTGTGTGTGAGACCGTTCCATTTTGA 1243
|| |||||||| || || ||||| ||| ||||| || |||||||| |||||| |||| ||
Sbjct 1004 TTGGCACCGCTGCATGA-TATAAACGAAGAACCGGTATGTGTGAGGCCGTTCAATTTCGA 1062
Query 1244 TTTCGAGCAACCTTCATTGACGGAAGAGAACATCAAGGAGCTTATATATCGTGAATCAGT 1303
||||||||||||| | ||||| ||||||||||| |||||||||||||| |||||| ||||
Sbjct 1063 TTTCGAGCAACCTACTTTGACAGAAGAGAACATTAAGGAGCTTATATACCGTGAAACAGT 1122
Query 1304 CAAGTTTAACCCT 1316
|||||| || |||
Sbjct 1123 CAAGTTCAATCCT 1135
> Ahg322261 jgi|Araly1|322261|fgenesh1_pm.C_scaffold_4002318
Length=1221
Score = 623 bits (337), Expect = 1e-177
Identities = 823/1052 (78%), Gaps = 56/1052 (5%)
Strand=Plus/Plus
Query 265 ATGGTGGTCGTTATGTGCAGTATAATGTCTATGGA-AATCTCTTTGAAGTTTCTAAAAAG 323
||||||| || ||||| ||||| || || |||||| || |||||||||||||| ||||
Sbjct 161 ATGGTGGCCGCTATGTTCAGTACAACGTTTATGGACAA-CTCTTTGAAGTTTCCCGAAAG 219
Query 324 TATGTTCCTCCTCTTCGTCCTATCGGCAGAGGCGCTT-CTGGCATCGTCTGTGCTGCATG 382
||||| |||||| ||||||| || || |||||||||| | || || ||||||||||| |
Sbjct 220 TATGTCCCTCCTATTCGTCCCATTGGTAGAGGCGCTTGC-GGTATTGTCTGTGCTGC-GG 277
Query 383 -GAATTCGGAGACGGGTGAGGAAGTAGCGATCAAGAAGATTGGTAATGCATTTGGCAACA 441
||| || | ||| || ||| |||| || || |||||||| |||||||| |||| ||||
Sbjct 278 TGAACTCAGTGACTGGAGAGAAAGTGGCTATTAAGAAGATCGGTAATGCTTTTGATAACA 337
Query 442 TTATCGACGCTAAGAGAACTTTGA-GAGAGATTAAGCTTCTTAAGCATATGGATCATGAC 500
| || || |||||||||||||| | | || ||||| ||||| | |||||||||||||||
Sbjct 338 TCATTGATGCTAAGAGAACTTT-ACGTGAAATTAAACTTCTCAGGCATATGGATCATGAG 396
Query 501 AATGTCATTGCCATTATAGACATAATAAGACCACCTCAGCCAGACAACTTCAATGATGTT 560
|| || || |||| | ||| || ||||||| || || | ||| | |||||| |||| |
Sbjct 397 AACGTTATAACCATCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAACGATG-T 455
Query 561 C-ACATTGTCTATGAGTTAATGGACACTGATCTTCACCACATTA-TCCGCTCTAACCAAC 618
| |||||||||||||||||||||||||||||||||| | | | |||| |||||||||
Sbjct 456 CTACATTGTCTATGAGTTAATGGACACTGATCTTCAA-AGAATCCTCCGTTCTAACCAAA 514
Query 619 CGTTAACT-GATGATCATT-CACGGTTCTTCCT-GTAT-C-AGTTGTTGCGAGGCCTCAA 673
| | || | |||||| | | || |||||| |||| | || | || |||| |||||
Sbjct 515 CACTGACCAG-TGATCAATGC-CG---CTTCCTAGTATACCAGCTCTTAAGAGGGCTCAA 569
Query 674 GTATGTGCATTCAGCCAATGTACTGCATCGTGATTTAAAACCGAGTAACTTGCTCCTGAA 733
|| ||||| || || || || | ||||||||| ||| || || ||| |||| || ||
Sbjct 570 ATACGTGCACTCGGCGAACATATTACATCGTGATCTAAGGCCAAGCAACGTGCTACTTAA 629
Query 734 -T-GCAAACTGTGACCTCAAGATTGGGGATTTTGGGCTTGCGAGGACTAAAT-CAGAGAC 790
| | ||| || | | | |||||||| |||||||||||||| || || || | |||| ||
Sbjct 630 CTCGAAAAATGAG-C-TGAAGATTGGTGATTTTGGGCTTGCAAGAAC-AACTTCAGACAC 686
Query 791 AGACTTCATGACAGAATATGTTGTTACACGTTGGTACCGAGCTCCAGAGTTGCTCCTTAA 850
|||||||||||| |||||||| ||||| ||||||||| | ||||| |||||||| |||||
Sbjct 687 AGACTTCATGACTGAATATGTCGTTACCCGTTGGTACAGGGCTCCTGAGTTGCTTCTTAA 746
Query 851 TTGCTCAGAATACACTGCAGCTATCGACATTTGGTCTGTCGGTTGTATACTCGGTGAAAT 910
|||||||| ||||| |||||||| || ||||||||||| ||||| |||||||| |||||
Sbjct 747 CTGCTCAGAGTACACCGCAGCTATTGATATTTGGTCTGTTGGTTGCATACTCGGCGAAAT 806
Query 911 AATGACGCGGG-AGCCGTTATTTCCGGGCAGAGATTATGTTCAGCAGCTTAGACTCATCA 969
|||||| || ||||||| ||||| |||| |||||||||||| |||||||| || || |
Sbjct 807 CATGACG-GGACAGCCGTTGTTTCCAGGCAAAGATTATGTTCATCAGCTTAGGCTTATAA 865
Query 970 CTGAGCTTATAGGCTCACCAGATGATTCAAGCCTAGGATTC-TTAAGAAGCGACAACGCT 1028
| |||||| ||||||| ||||| |||| ||||| || ||| || | || ||||||||
Sbjct 866 CAGAGCTTGTAGGCTCTCCAGACAATTCCAGCCTGGGCTTCCTTC-GCAGTGACAACGCA 924
Query 1029 AGAAGATACGTAAGACAGCTTCCAC-AGTATCC-AAGACAAAACTTTGCCGCTAGATTCC 1086
||||| || || || || ||||| | | || || || ||| | ||||| ||||||||||
Sbjct 925 AGAAGGTATGTCAGGCAACTTCCGCGA-TACCCTAA-ACAGCAGTTTGCTGCTAGATTCC 982
Query 1087 C-AAACATGTCGGTCAAT-GCTGTTGATTTGCTGCAGAAAATGCTCGTCTTTGACCCAAA 1144
| ||| ||| | || | ||| | ||||||||| ||| ||||||||||||||| || ||
Sbjct 983 CGAAA-ATGCCC-TCTACCGCTATCGATTTGCTGGAGAGAATGCTCGTCTTTGATCCTAA 1040
Query 1145 CAGACGCAT-TACAGTCGATGAAGCC-TTGTGCCACCCTTACTTAGCACCGCTAC-ACGA 1201
| | ||||| | |||||||||||||| ||| |||| ||||| || |||||| || ||||
Sbjct 1041 CCGGCGCATCT-CAGTCGATGAAGCCCTTG-GCCATGCTTACCTATCACCGC-ACCACGA 1097
Query 1202 ATATAA-CGAGGAACCTGTGTGTGT-GAGACCGTTCCAT-TTTGATTTCGAGCAACCTTC 1258
| | | | | ||||| || ||| | || || ||| | |||||||||||||| |||||
Sbjct 1098 -TGTGAGCAAAGAACCGGTTTGT-TCGACTCCTTTC-AGCTTTGATTTCGAGCATCCTTC 1154
Query 1259 ATTG-ACGGAAGAGA-ACATCAAGGAGCTTAT 1288
||| || ||||| | |||| |||||||||||
Sbjct 1155 -TTGCACAGAAGA-ACACATAAAGGAGCTTAT 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49331054598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5