BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01570.1 Length=1437 Score E Sequences producing significant alignments: (Bits) Value Ahg909816 jgi|Araly1|909816|Al_scaffold_0001_70 2218 0.0 > Ahg909816 jgi|Araly1|909816|Al_scaffold_0001_70 Length=1533 Score = 2218 bits (1201), Expect = 0.0 Identities = 1368/1447 (95%), Gaps = 17/1447 (1%) Strand=Plus/Plus Query 1 ATGTCGAGGCTAATCTTCTTAATTCTCGCCAttctcttctctcttcaattcgttttctac 60 ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 94 ATGTCGAAGCTAATCTTCTTAATTCTCGCCATTCTTTTCTCTCTTCAATTCGTTTTCTAC 153 Query 61 cctttaaatttcatctcctcttcttctcaa---c---ctctGATCAAATTCTCTGTTTCA 114 ||||||||||||||||||||||||||| || | ||||||||||||||||||||||| Sbjct 154 CCTTTAAATTTCATCTCCTCTTCTTCTGAACCTCGATCTCTGATCAAATTCTCTGTTTCA 213 Query 115 CCCGTCGTATCCGGATCCGGGTCGGTTCATGAACCGGACCAAACCGAACTCAAGCACGTC 174 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 214 CCCGTCGGATCCGGATCCGGGTCGGTTCATGAACCGGAACAAACCGAACTCAAGCACGTC 273 Query 175 GTTTTCGGAATCGCCGCCTCTGCGAAATTCTGGAAACACCGTAA-AGACTACGTGAAGCT 233 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 274 GTTTTCGGAATCGCCGCCTCTGCGAAATTCTGGAAACACCG-AAGAGACTACGTGAAGCT 332 Query 234 CTGGTGGAAACCAAACGGTGAAATGAACGGCGTCGTTTGGTTAGACCAACACATTAACCA 293 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 333 CTGGTGGAAACCAAACGGTGAAATGAACGGCGTCGTTTGGTTGGACCAACACATTGACCA 392 Query 294 AAACGACAACGTTTCGAAAACATTACCTCCGATCAGAATCTCCTCCGACACGTCTAGGTT 353 |||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| Sbjct 393 AAACGACAACGTTTCGAACACATTACCTCCGCTCAGAATCTCCTCCGACACGTCGAGGTT 452 Query 354 TCAGTA-CAGATACCCAAAGGGTCTCCGATCGGCGATCAGAATCACGAGAATCGTCTCGG 412 | |||| | ||||||| ||||| |||||||||||||| |||||||||||||||||||||| Sbjct 453 TAAGTATC-GATACCCGAAGGGACTCCGATCGGCGATAAGAATCACGAGAATCGTCTCGG 511 Query 413 AGACGGTGAGGCTGTTGAACGGAACAGAGT-TGGAGAAAAACGTGAGGTGGATTGTGATG 471 |||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 512 AGACAGTGAGGCTCTTGAACGGAACAGAGTCT-GAGAAAAACGTGAGGTGGATTGTGATG 570 Query 472 GGAGACGACGACACTGTGTTTTTCCCGGAGAATCTTGTCAAGGTTTTGAGAAAGTACGAT 531 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 571 GGAGACGACGACACTGTGTTTTTCCCGGAGAATCTTGTTAAGGTTTTGAGAAAGTACGAT 630 Query 532 CACAATCAGTTTTATTACATCGGAAGCTCGTCGGAGAGTCATATACAGAATCTCAAGTTC 591 || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 631 CATAATCAGTTTTATTACATCGGAAGCTCGTCGGAGAGTCATATTCAGAATCTGAAGTTC 690 Query 592 TCTTACGGGATGGCTTATGGAGGAGGAGGGTTCGCGATTAGCTATCCGTTGGCTAAAGCA 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 691 TCTTACGGGATGGCTTATGGAGGAGGAGGGTTCGCGATTAGCTATCCGTTGGCTAAAGCA 750 Query 652 TTAGAGAAAATGCAAGATCGTTGTATTCAGAGATATTCGGAATTGTACGGCTCCGATGAT 711 || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 751 TTGGAGAAAATGCAAGATCGTTGTATTCAGAGATATGCGGAATTGTACGGCTCCGATGAT 810 Query 712 CGGATTCATGCTTGTATGTCGGAACTCGGTGTTCCTTTGACTAAGGAAGTTGGCTTCCAT 771 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 811 CGGATTCATGCTTGTATGTCGGAACTCGGTGTTCCTTTGACTAAAGAAGTTGGCTTCCAT 870 Query 772 CAGATTGATTTATACGGGAAACTTCTGGGCCTATTATCGGCCCATCCACTGGCTCCTCTA 831 |||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||| ||| Sbjct 871 CAGATTGATTTATATGGGAAACTTCTAGGCCTGCTATCGGCCCATCCATTGGCTCCGCTA 930 Query 832 GTATCGATCCACCATTTAGACTTAGTGGATCCAGTATTCCCAAACATGGGCCGAGTCAAC 891 || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 931 GTCTCGATCCATCATTTAGACTTAGTGGATCCAGTATTCCCAAATATGGGCCGAGTCAAC 990 Query 892 GCCATGAGACGTTTCATGGTCCCCGCAAAACTCGACTCACCGAGCCTCGCGCAGCAATCA 951 ||||||||||||||||||||| ||||||| || |||||| |||||||||||||||| ||| Sbjct 991 GCCATGAGACGTTTCATGGTCTCCGCAAAGCTGGACTCAGCGAGCCTCGCGCAGCAGTCA 1050 Query 952 ATCTGCTACGACGCGGACCACCGATGGACCGTGTCTGTCTCGTGGGGATACACAGTCCAG 1011 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1051 ATCTGCTACGACGTGGACCACCGATGGACCGTGTCTGTCTCGTGGGGTTACACAGTTCAG 1110 Query 1012 ATCATACGTGGCGTGTTGTCAGCTAGAGAGATGGTGATCCCCACGCGCACGTTCATCGAT 1071 |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1111 ATCACACGTGGCGTGTTGTCAGCTAAAGAGATGGTGATCCCCACGCGCACGTTCATCGAC 1170 Query 1072 TGGTACAAACAGGCAGACGAAAGAAGCTATGCTTTTAACACGCGTCCTA-TCGCCAAAAG 1130 ||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||| || Sbjct 1171 TGGTACAAACAAGCTGACGAGAGAAGCTACGCTTTTAACACGCGTCC-AGTCGCCAAGAG 1229 Query 1131 CGCGTGTCAGCGTCCGCGAGTGTATTACCTGTCCAACGCGCTTCCTGACTTGGCTTTGCG 1190 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1230 CGCGTGTCAGCGTCCGCGAGTGTATTACCTATCCAACGCGCTTCCTGACTTGGCATTGCA 1289 Query 1191 TAGAACTGCTAGTGAATACGTGAGATGGTACGACATGTGGGAGCCTGAATGTGACTGGGA 1250 ||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||| Sbjct 1290 TAGAACTGCTAGTGAGTACGT--GA-GGTATGACATGTGGGAGCCTGAATGTGACTGGGA 1346 Query 1251 TATGTCGGATCCTTCGGAATTTGAACGGGTCATTGTTTATAAGAAACCCGACCCGGATAG 1310 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1347 TATGTCGGATCCTTCGGAAATTGAACGGGTCATTGTTTATAAGAAACCCGACCCGGATAG 1406 Query 1311 ATGGAATAAACATAGGGCTCCGAGAAGAGATTGTTGTAGAGTATTGCCCACGACGAAGAA 1370 |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| Sbjct 1407 ATGGAATAAACATAGGGCTCCGAGAAGAGATTGTTGTAGAGTATTGCCTATGAAGAAGAA 1466 Query 1371 TGGGACTATGGTAATCGATGTAGGAGCTTGTAAAGATGATGAATTTGCTGAATTCCTTGT 1430 |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| ||| Sbjct 1467 TGGGACGATGGTAATCGATGTAGGAACTTGTAAAGATGATGAATTTGTTGAATTCCCTGT 1526 Query 1431 CAAATAG 1437 |||||| Sbjct 1527 GAAATAG 1533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53745335695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5