BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01570.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909816 jgi|Araly1|909816|Al_scaffold_0001_70 2218 0.0
> Ahg909816 jgi|Araly1|909816|Al_scaffold_0001_70
Length=1533
Score = 2218 bits (1201), Expect = 0.0
Identities = 1368/1447 (95%), Gaps = 17/1447 (1%)
Strand=Plus/Plus
Query 1 ATGTCGAGGCTAATCTTCTTAATTCTCGCCAttctcttctctcttcaattcgttttctac 60
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 94 ATGTCGAAGCTAATCTTCTTAATTCTCGCCATTCTTTTCTCTCTTCAATTCGTTTTCTAC 153
Query 61 cctttaaatttcatctcctcttcttctcaa---c---ctctGATCAAATTCTCTGTTTCA 114
||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 154 CCTTTAAATTTCATCTCCTCTTCTTCTGAACCTCGATCTCTGATCAAATTCTCTGTTTCA 213
Query 115 CCCGTCGTATCCGGATCCGGGTCGGTTCATGAACCGGACCAAACCGAACTCAAGCACGTC 174
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 214 CCCGTCGGATCCGGATCCGGGTCGGTTCATGAACCGGAACAAACCGAACTCAAGCACGTC 273
Query 175 GTTTTCGGAATCGCCGCCTCTGCGAAATTCTGGAAACACCGTAA-AGACTACGTGAAGCT 233
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 274 GTTTTCGGAATCGCCGCCTCTGCGAAATTCTGGAAACACCG-AAGAGACTACGTGAAGCT 332
Query 234 CTGGTGGAAACCAAACGGTGAAATGAACGGCGTCGTTTGGTTAGACCAACACATTAACCA 293
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 333 CTGGTGGAAACCAAACGGTGAAATGAACGGCGTCGTTTGGTTGGACCAACACATTGACCA 392
Query 294 AAACGACAACGTTTCGAAAACATTACCTCCGATCAGAATCTCCTCCGACACGTCTAGGTT 353
|||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct 393 AAACGACAACGTTTCGAACACATTACCTCCGCTCAGAATCTCCTCCGACACGTCGAGGTT 452
Query 354 TCAGTA-CAGATACCCAAAGGGTCTCCGATCGGCGATCAGAATCACGAGAATCGTCTCGG 412
| |||| | ||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 453 TAAGTATC-GATACCCGAAGGGACTCCGATCGGCGATAAGAATCACGAGAATCGTCTCGG 511
Query 413 AGACGGTGAGGCTGTTGAACGGAACAGAGT-TGGAGAAAAACGTGAGGTGGATTGTGATG 471
|||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 512 AGACAGTGAGGCTCTTGAACGGAACAGAGTCT-GAGAAAAACGTGAGGTGGATTGTGATG 570
Query 472 GGAGACGACGACACTGTGTTTTTCCCGGAGAATCTTGTCAAGGTTTTGAGAAAGTACGAT 531
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 571 GGAGACGACGACACTGTGTTTTTCCCGGAGAATCTTGTTAAGGTTTTGAGAAAGTACGAT 630
Query 532 CACAATCAGTTTTATTACATCGGAAGCTCGTCGGAGAGTCATATACAGAATCTCAAGTTC 591
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 631 CATAATCAGTTTTATTACATCGGAAGCTCGTCGGAGAGTCATATTCAGAATCTGAAGTTC 690
Query 592 TCTTACGGGATGGCTTATGGAGGAGGAGGGTTCGCGATTAGCTATCCGTTGGCTAAAGCA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TCTTACGGGATGGCTTATGGAGGAGGAGGGTTCGCGATTAGCTATCCGTTGGCTAAAGCA 750
Query 652 TTAGAGAAAATGCAAGATCGTTGTATTCAGAGATATTCGGAATTGTACGGCTCCGATGAT 711
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 751 TTGGAGAAAATGCAAGATCGTTGTATTCAGAGATATGCGGAATTGTACGGCTCCGATGAT 810
Query 712 CGGATTCATGCTTGTATGTCGGAACTCGGTGTTCCTTTGACTAAGGAAGTTGGCTTCCAT 771
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 811 CGGATTCATGCTTGTATGTCGGAACTCGGTGTTCCTTTGACTAAAGAAGTTGGCTTCCAT 870
Query 772 CAGATTGATTTATACGGGAAACTTCTGGGCCTATTATCGGCCCATCCACTGGCTCCTCTA 831
|||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||| |||
Sbjct 871 CAGATTGATTTATATGGGAAACTTCTAGGCCTGCTATCGGCCCATCCATTGGCTCCGCTA 930
Query 832 GTATCGATCCACCATTTAGACTTAGTGGATCCAGTATTCCCAAACATGGGCCGAGTCAAC 891
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 931 GTCTCGATCCATCATTTAGACTTAGTGGATCCAGTATTCCCAAATATGGGCCGAGTCAAC 990
Query 892 GCCATGAGACGTTTCATGGTCCCCGCAAAACTCGACTCACCGAGCCTCGCGCAGCAATCA 951
||||||||||||||||||||| ||||||| || |||||| |||||||||||||||| |||
Sbjct 991 GCCATGAGACGTTTCATGGTCTCCGCAAAGCTGGACTCAGCGAGCCTCGCGCAGCAGTCA 1050
Query 952 ATCTGCTACGACGCGGACCACCGATGGACCGTGTCTGTCTCGTGGGGATACACAGTCCAG 1011
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1051 ATCTGCTACGACGTGGACCACCGATGGACCGTGTCTGTCTCGTGGGGTTACACAGTTCAG 1110
Query 1012 ATCATACGTGGCGTGTTGTCAGCTAGAGAGATGGTGATCCCCACGCGCACGTTCATCGAT 1071
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1111 ATCACACGTGGCGTGTTGTCAGCTAAAGAGATGGTGATCCCCACGCGCACGTTCATCGAC 1170
Query 1072 TGGTACAAACAGGCAGACGAAAGAAGCTATGCTTTTAACACGCGTCCTA-TCGCCAAAAG 1130
||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||| ||
Sbjct 1171 TGGTACAAACAAGCTGACGAGAGAAGCTACGCTTTTAACACGCGTCC-AGTCGCCAAGAG 1229
Query 1131 CGCGTGTCAGCGTCCGCGAGTGTATTACCTGTCCAACGCGCTTCCTGACTTGGCTTTGCG 1190
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1230 CGCGTGTCAGCGTCCGCGAGTGTATTACCTATCCAACGCGCTTCCTGACTTGGCATTGCA 1289
Query 1191 TAGAACTGCTAGTGAATACGTGAGATGGTACGACATGTGGGAGCCTGAATGTGACTGGGA 1250
||||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||
Sbjct 1290 TAGAACTGCTAGTGAGTACGT--GA-GGTATGACATGTGGGAGCCTGAATGTGACTGGGA 1346
Query 1251 TATGTCGGATCCTTCGGAATTTGAACGGGTCATTGTTTATAAGAAACCCGACCCGGATAG 1310
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 TATGTCGGATCCTTCGGAAATTGAACGGGTCATTGTTTATAAGAAACCCGACCCGGATAG 1406
Query 1311 ATGGAATAAACATAGGGCTCCGAGAAGAGATTGTTGTAGAGTATTGCCCACGACGAAGAA 1370
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 1407 ATGGAATAAACATAGGGCTCCGAGAAGAGATTGTTGTAGAGTATTGCCTATGAAGAAGAA 1466
Query 1371 TGGGACTATGGTAATCGATGTAGGAGCTTGTAAAGATGATGAATTTGCTGAATTCCTTGT 1430
|||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 1467 TGGGACGATGGTAATCGATGTAGGAACTTGTAAAGATGATGAATTTGTTGAATTCCCTGT 1526
Query 1431 CAAATAG 1437
||||||
Sbjct 1527 GAAATAG 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5