BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01580.1
Length=2409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470119 jgi|Araly1|470119|fgenesh2_kg.1__73__AT1G01580.1 3709 0.0
Ahg943733 jgi|Araly1|943733|scaffold_604277.1 1164 0.0
Ahg909813 jgi|Araly1|909813|Al_scaffold_0001_67 671 0.0
> Ahg470119 jgi|Araly1|470119|fgenesh2_kg.1__73__AT1G01580.1
Length=2275
Score = 3709 bits (2008), Expect = 0.0
Identities = 2191/2280 (96%), Gaps = 10/2280 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATCGA-AAAAAGCAATAAC-G--GTGGTTCGAACCCATCTGCAGGAGAAGAATT 56
||||||||| | |||||||||||| | |||||||||||| ||||||||||||||| ||
Sbjct 1 ATGGAGATC-ACCAAAAGCAATAACGGTAGTGGTTCGAACCTATCTGCAGGAGAAGAGTT 59
Query 57 TAAGGATATGATTAAGGGAGTGACTAAGTTCTTGATGATGGTGATTTTCCTTGGAACCAT 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 TAAGGATATGATTAAGGGAGTGACTAAGTTCTTGATGATGGTGATTTTCCTTGGAACTAT 119
Query 117 CATGCTTTGGATCATGATGCCAACACTAACCTATCGAACCAAGTGGTTGCCACATCTGCG 176
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 120 CATGCTTTGGATCATGATGCCAACACTAACCTACCGAACCAAGTGGTTGCCACATATGCG 179
Query 177 TATCAAGTTTGGAACATCCACTTATTTTGGTGCCACAGGGACGACGCTTTTCATGTATAT 236
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 TATCAAGTTTGGAACATCAACTTACTTTGGTGCCACAGGGACGACGCTTTTCATGTATAT 239
Query 237 GTTCCCAATGATGGTCGTAGCTTGTTTGGGATGTGTCTATCTTCACTTCAAGAATCGAAA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTCCCAATGATGGTCGTAGCTTGTTTGGGATGTGTCTATCTTCACTTCAAGAATCGAAA 299
Query 297 GTCGCCACACCATATCGATAGGGAGACGAAGGGAGGAGTGTGGAGTAAACTAAGAAAGCC 356
|||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTCGTCAGACCATATCGATAGAGAGACGAAGGGAGGAGTGTGGAGTAAACTAAGAAAGCC 359
Query 357 AATGTTAGTGAAGGGGCCATTAGGAATAGTCTCAGTGACTGAGATCACCTTCTTGGCGAT 416
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATGTTAGTGAAGGGACCATTAGGAATAGTCTCAGTGACTGAGATCACCTTCTTGGCGAT 419
Query 417 GTTTGTGGCTCTTCTTCTCTGGTGCTTTATCACTTATTTGCGCAATAGCTTCGCCACTAT 476
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTTGTGGCTCTTCTTCTTTGGTGCTTTATCACTTATTTGCGCAATAGCTTCGCCACTAT 479
Query 477 CACTCCTAAATCAGCTGCCGCACATGACGAATCTTTGTGGCAAGCGAAGCTGGAATCAGC 536
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 CACTCCTAAATCAGCTGCCGCACATGACGAATCATTGTGGCAAGCGAAGCTGGAATCAGC 539
Query 537 GGCGCTAAGGTTAGGACTGATCGGAAACATATGTTTGGCGTTCTTGTTCTTACCGGTGGC 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 GGCGCTAAGGTTAGGACTGATCGGAAACATATGTTTAGCGTTCTTGTTCTTACCGGTGGC 599
Query 597 TCGTGGGTCATCGTTGCTACCGGCAATGGGATTAACCTCGGAGTCAAGCATCAAATACCA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCGTGGGTCATCGTTGCTACCGGCAATGGGATTAACCTCGGAGTCAAGCATCAAATACCA 659
Query 657 TATATGGCTCGGCCACATGGTCATGGCCCTTTTCACCGTTCATGGTCTTTGTTACATAAT 716
||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 660 TATTTGGCTCGGACACATGGTCATGGCCCTTTTCACGGTTCATGGTCTCTGTTACATCAT 719
Query 717 TTACTGGGCCTCAATGCATGAAATCTCCCAGATGATCATGTGGGATACGAAAGGTGTCTC 776
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTACTGGGCCTCTATGCATGAAATCTCCCAGATGATCATGTGGGATACGAAAGGTGTCTC 779
Query 777 AAATTTGGCCGGAGAGATAGCTCTGGCGGCCGGACTTGTGATGTGGGCCACCACATATCC 836
|||||||||||||| ||||| |||| ||| |||||| ||||||||||||||||||||||
Sbjct 780 GAATTTGGCCGGAGAAATAGCACTGGTGGCTGGACTTATGATGTGGGCCACCACATATCC 839
Query 837 GAAGATAAGGAGAAGATTCTTCGAAGTCTTCTTCTACACTCACTATCTCTACATCGTCTT 896
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAGATAAGGAGGAGATTCTTCGAAGTCTTCTTCTACACTCACTATCTCTACATCGTCTT 899
Query 897 CATGCTCTTCTTTGTCCTCCACGTCGGCATAAGTTTCTCCTTCATCGCTCTCCCTGGTTT 956
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 CATGCTCTTCTTCGTCCTCCACGTCGGCATAACCTTCTCCTTCATCGCTCTCCCTGGTTT 959
Query 957 CTACATCTTCTTAGTCGATCGTTTCCTTCGGTTTCTTCAGTCACGTGAAAATGTTCGCTT 1016
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 960 CTACATCTTCTTAGTCGATCGTTTCCTTAGGTTTCTTCAGTCACGTGAAAATGTTCGCTT 1019
Query 1017 GCTCGCTGCTCGGATTCTTCCTTCCGACACTATGGAGCTCACTTTCTCCAAAAACTCTAA 1076
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCTCTCTGCTCGGGTTCTTCCTTCCGACACTATGGAGCTCACTTTCTCCAAAAACTCTAA 1079
Query 1077 GTTGGTTTATAGCCCGACGAGCATAATGTTTGTGAACATACCGAGCATTTCAAAGCTGCA 1136
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTTGGTGTATAGCCCGACGAGCATAATGTTTGTGAACATACCGAGCATTTCAAAGCTGCA 1139
Query 1137 ATGGCATCCGTTTACGATAACTTCCAGTAGCAAACTCGAACCAGAGAAGCTAAGTATTGT 1196
||||||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct 1140 ATGGCATCCATTTACGATAACGTCGAGTAGCAAACTCGAACCAGAGAAGCTAAGTGTTGT 1199
Query 1197 TATCAAGAAAGAAGGCAAATGGTCAACTAAGCTTCACCAGAGGCTTTCTTCTTCTGATCA 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CATCAAGAAAGAAGGCAAATGGTCAACTAAGCTTCACCAGAGGCTTTCTTCTTCTGATCA 1259
Query 1257 GATCGACCGACTTGCTGTTTCTGTAGAAGGTCCTTACGGCCCTGCTTCCGCCGATTTCTT 1316
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1260 GATCGACCGACTTGCTGTTTCTGTAGAAGGTCCTTACGGCCCTGCTTCCACCGATTTCTT 1319
Query 1317 AAGGCATGAAGCTTTGGTTATGGTGTGCGGAGGAAGCGGGATAACTCCGTTTATCTCTGT 1376
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1320 AAGGCATGAAGCTTTGGTTATGGTGTGTGGGGGAAGCGGGATAACTCCCTTTATCTCTGT 1379
Query 1377 TATTCGTGATTTGATCGCCACAAGCCAAAAGGAAACATGCAAAATCCCAAAAATAACTCT 1436
||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||||
Sbjct 1380 TATTCGTGATTTGATCGCCACAATCCAAAAAGAAACATGCAAAATCCCCAAAATTACTCT 1439
Query 1437 CATTTGTGCGTTTAAGAAGTCTTCAGAGATCTCCATGCTCGATCTTGTCTTGCCATTATC 1496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GATTTGTGCGTTTAAGAAGTCTTCAGAGATCTCCATGCTCGATCTTGTCTTGCCATTATC 1499
Query 1497 CGGTCTTGAGACTGAACTATCCTCCGACATTAACATCAAAATCGAAGCCTTCATAACCCG 1556
|||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1500 CGGTCTCGAGACTGAACTATCCTCCAACATAAACATCAAAATCGAAGCCTTCATAACCCG 1559
Query 1557 AGATAATGATGCAGGAGAT-GAAGCAAAAGCTGGGAAAATCAAAACTCTCTGGTTCAAAC 1615
||| || || ||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1560 AGAGAAAGAAGCAGGAG-TCGAAGCAACAGCTGGGAAAATCAAAACTCTCTGGTTCAAAC 1618
Query 1616 CAAGTCTTTCAGACCAATCCATCTCATCAATCCTCGGACCAAACTCATGGCTTTGGCTCG 1675
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1619 CAAGTCTTTCAGACCAATCCATCTCATCAATCCTCGGACCAAACTCAAGGCTTTGGCTCG 1678
Query 1676 GTGCAATTCTCGCATCTTCGTTCTTGATCTTCATGATAATTATTGGTATCATCACTAGGT 1735
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1679 GTGCAATTCTCGCATCTTCGTTCTTGATCTTCATGATAATTATTGGTATCATCAGTAGGT 1738
Query 1736 ATTACATTTACCCGATCGACCACAACACCAACAAGATCTATTCTTTGACTTCAAAAACCA 1795
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1739 ATTACATTTACCCGATCGACCACAACACCAACAAGATCTATTCATTGACTTCAAAGACCA 1798
Query 1796 TCATATATATCTTGGTCATCTCCGTGAGCATAATGGCGACTTGTAGTGCGGCTATGTTGT 1855
||||||||||||| |||||||||||||| || |||||||||| ||||||||||||||| |
Sbjct 1799 TCATATATATCTTAGTCATCTCCGTGAGTATCATGGCGACTTCTAGTGCGGCTATGTTAT 1858
Query 1856 GGAACAAGAAGAAGTATGGTAAAGTTGAAAGTAAACAGGTCCAAAACGTCGACCGTCCAT 1915
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GGAACAAGAAGAAGTACGGTAAAGTTGAAAGTAAACAGGTCCAAAACGTCGACCGTCCAT 1918
Query 1916 CTCCAACATCTTCTCCTACCTCATCATGGGGTTACAATTCCTTGAGAGAAATCGAAAGTA 1975
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1919 CTCCAACATCTTCTCCTACCTCAT---GGGGTTACAATTCCTTGAGAGAAATTGAAAGTA 1975
Query 1976 CGCCACAAGAATCGCTCGTGCAACGCACCAATCTGCATTTTGGAGAAAGACCTAATCTCA 2035
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1976 CGCCACAAGAATCGCTCGTGCAACGCACCAACCTGCATTTCGGAGAAAGACCTAATCTCA 2035
Query 2036 AGAAACTTCTACTTGATGTGGAAGGTTCGAGTGTGGGAGTTCTTGTTTGTGGTCCTAAGA 2095
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2036 AGAAACTTCTACTTGATGTGGAAGGTTCGAGTGTGGGAGTTCTTGTGTGTGGTCCCAAGA 2095
Query 2096 AGATGAGACAAAAGGTTGCGGAAATATGTTCCTCTGGTTTGGCTGAGAATCTTCATTTTG 2155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 AGATGAGACAAAAGGTTGCGGAAATATGTTCCTCTGGTTTGGCTGAGAATCTTCATTTTG 2155
Query 2156 AATCTATCAGTTTCAGCTGGTGATTGCGTATATAACTCTGTTTTCACTATGTGTTGTGCA 2215
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct 2156 AATCTATCAGTTTCAGCTGGTGATTGCGTATACAACTCTGTTTTTACTATGTGTTATGGG 2215
Query 2216 ATTTGCTTGAGTTGCAAGTTAATAAGGTGGCCCTGTGATTTGACCTATCTTTGTGTGCTT 2275
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 2216 ATTTGCTTCAGTTGCAAGTTAATAAGGTGGGCCTGTGATTTGACCTATCTTTTTGTGCTT 2275
> Ahg943733 jgi|Araly1|943733|scaffold_604277.1
Length=2206
Score = 1164 bits (630), Expect = 0.0
Identities = 1698/2198 (77%), Gaps = 136/2198 (6%)
Strand=Plus/Plus
Query 47 GAGAAGAATTTAAGGATATGATTAAGGGAGTGACTAAGTTCTTGATGATGGTGATTTTCC 106
|||| || || || ||| ||||||||||| ||| |||| |||| ||| ||||||||||||
Sbjct 64 GAGATGAGTTCAAAGATGTGATTAAGGGATTGATTAAGCTCTTAATGCTGGTGATTTTCC 123
Query 107 TTGGAACCATCATGC-TTTGGATCATGATGCCAA-CACTAACCTATCGAACCAAGTGGTT 164
| |||| |||| | | ||||| | | ||||||| || | ||||||||||||||||||
Sbjct 124 TAGGAATCATC-TTCATTTGGGCCCTTATGCCAACCA-TGGTCTATCGAACCAAGTGGTT 181
Query 165 --GCCAC-ATC-TGCGTATCAAGTTTGGAACATCCACTTATTTTGGTGCCACAGGGACGA 220
|| | || |||||| | ||||||| ||||| |||||||||||||| | ||| ||
Sbjct 182 AAACC-CTGTCATGCGTACCGAGTTTGGTACATCGACTTATTTTGGTGCTATAGGCTTGA 240
Query 221 CGC-TTTTCATGTAT-ATGTTCCCAATGATGGTCGTAGCTTGTTTGGGATGTGTCTATCT 278
| | ||||||||| | |||||||||||| | || | ||||||||||||||| |||| ||
Sbjct 241 C-CTTTTTCATGT-TCATGTTCCCAATGGTCCTCATGGCTTGTTTGGGATGTCTCTACCT 298
Query 279 TCACTTCAAGAATCGAAAG--TCGCCACACCATATCGATAGGGAGACG--AA--G--GGA 330
|||||| ||||| | |||| | | | | || ||| |||||||| | || | ||
Sbjct 299 TCACTTGAAGAAACAAAAGAAT-ACTA-ATCACCTCGCTAGGGAGAAGATAACTGACGGG 356
Query 331 GGAG-TGT-GGAGTAAACT-AAGAAAGCCAATGTTAGTGAAGGGGCCATTAGGAATAGTC 387
|||| | | | || || | || || ||||||| | || || |||||||| || ||||||
Sbjct 357 GGAGTTTTCGCAG-CAA-TGAA-AAGGCCAATGCTGGTCAAAGGGCCATTGGGGATAGTC 413
Query 388 TCAGTGACTGAGATCACCTTCTTGGCGATGTTTGTGGCTCTTCTTCTCTGGTGCTTTATC 447
|||| |||||| | | ||| ||||| |||||||| ||||||||||| ||| |||| ||
Sbjct 414 TCAGCAACTGAGTTAATCTTGTTGGCAATGTTTGTAGCTCTTCTTCTTTGGAACTTTTTC 473
Query 448 ACT-TATTTGCGCAATAGC-TTCGCC-ACTATCACTCCTAAATCAGCTGCCGCACATGAC 504
| | || |||||||| || ||| || || || |||||| ||||||| || |||| ||
Sbjct 474 A-TGTACATGCGCAAT-GCTTTC-CCTACCATTACTCCTCAATCAGCCGCTAAACATCAC 530
Query 505 GAATCTTTGTGGCAAGCGAA-GCTGGAATCAGCGGC-GCTAAGGTTAGGACTGA-TCGGA 561
|| || |||||||| || | |||| || ||| | ||||| | || || | ||||
Sbjct 531 CAAAAATTATGGCAAGC-AAGGTTGGAGGCAATGGCAG-TAAGGATCGGGCT-AGTCGGT 587
Query 562 AACAT-ATGTTTGGCGTTCTTGTTCTTACCGGTGGCT-CGTGGGTCATCGTTGCTACCGG 619
||| | ||| | || ||| | ||| ||||||||| | ||||| ||||| ||||| ||||
Sbjct 588 AAC-TGTTGTCTAGCTTTCCTATTCATACCGGTGG-TGCGTGGATCATCATTGCTTCCGG 645
Query 620 CAAT-GGGATTAACCTCGGAGTCAAGCATCAAATACCATATATGGCTCGGCCACATGGTC 678
| ||| | || || |||||||||||||| |||||||| ||||| || |||||| ||
Sbjct 646 TTGTAGGG-CTGACGTCAGAGTCAAGCATCAAGTACCATATTTGGCTTGGTCACATGCTC 704
Query 679 ATGGCCCTTTTCACCGTTCATGGTCTTTGTTACATAATTTACTGGGCCTCAATGCATGAA 738
||| |||| ||||||| |||||||||||||| ||| | || ||||||||||||||||||
Sbjct 705 ATGACCCTCTTCACCGCTCATGGTCTTTGTTTCATTGTCTATTGGGCCTCAATGCATGAA 764
Query 739 ATCTCCCAGATGATCATG-TGGGATACGAAAGGTG-TCTCAAAT-TTGGCCGGAGAGATA 795
||||| |||||| | | | |||| || | | | | | || ||| || ||||| ||||||
Sbjct 765 ATCTCTCAGATGGTGA-GTTGGGGTAAG-ACCGAGATGTCGAATGTT-GCCGGGGAGATA 821
Query 796 GCTCTGGCGGCCGGACTTGTGATGTGGGCCACCACATATCCGA-AGATAAGGAGAAGATT 854
|| || | | ||||||||||||||||||||||||||||| | ||| || || |||||
Sbjct 822 ACTTTGTTGTCTGGACTTGTGATGTGGGCCACCACATATCC-ATCGATTAGAAGGAGATT 880
Query 855 CTTCGAAGTCTTCTTCTACACTCACTATCTCTACATCGTCTTCATGCTCTTCTTTGTCCT 914
||| ||||| |||||||| | |||||| || |||||||||||||||||||||| |||||
Sbjct 881 CTTTGAAGTTTTCTTCTATAGTCACTACCTTTACATCGTCTTCATGCTCTTCTACGTCCT 940
Query 915 CCACGTCGGCATAAG-TTTCTCCTTCATC-GCTCTCCCTGGTTTCTACATCTTCTTAGTC 972
|||||| ||| | | |||| ||| ||| || |||| |||||||| |||||| | |||
Sbjct 941 CCACGTAGGCGT-CGCCTTCTGCTTTATCACCT-TCCCCGGTTTCTATATCTTCATGGTC 998
Query 973 GATCGTTTCCTT-CGGTTTCTTCAGTCACGTGAAAATGTTCGCTTGCTCGCTGCTCG-GA 1030
|||||||| ||| ||||||| ||||||||||| ||| |||| ||| | |||| || |
Sbjct 999 GATCGTTT-CTTGAGGTTTCTACAGTCACGTGACAATATTCGGTTGAGCTCTGCACGTG- 1056
Query 1031 TTCTTCCTTCCGACACTATGGAGCTCACTTTCTCCAAAAACTCTAA-G-TTGGTTTATAG 1088
||||||| |||||||| | ||||||||||||| |||||| | || | ||||| ||||
Sbjct 1057 TTCTTCCGTCCGACACCGTTGAGCTCACTTTCTTCAAAAA--CAAAGGATTGGTGTATAA 1114
Query 1089 CCCGACGAGCATAATGTTTGTGAACATACCGAGCATTTCAAAGCTGCAATGGCATCCGTT 1148
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1115 TCCGACGAGCATATTGTTTGTGAACATACCGAGCATTTCAAAGCTGCAGTGGCATCCATT 1174
Query 1149 TACGATAACTTCCAGTAGCAAACTCGAACCAGAGAAGCTAAGTATTGTTATCAAGAAAGA 1208
| |||| ||||| || || || || ||| |||| |||||||| ||||| || |||| ||
Sbjct 1175 TTCGATTACTTCGAGCAGTAACCTAGAAGCAGATAAGCTAAGCATTGTGATTAAGAGTGA 1234
Query 1209 AGGCAAATGGTCAACTAAGCTTCACCAGAGGCTTTCTTCTTCTGATCAGATCGACCGA-C 1267
||| |||||||| || |||||| || ||| |||||||||||||||||| |||||| | |
Sbjct 1235 AGGGAAATGGTCTACAAAGCTTTACGAGATGCTTTCTTCTTCTGATCATATCGACAGTTC 1294
Query 1268 T-TG-CTGTTTCTGTAGAAGGTCCTTACGGCCCTGCTTCCGCCGATTTCTTAAGGCATGA 1325
| | |||||||||| ||||| || || || ||| |||| |||||| ||||||| ||
Sbjct 1295 TCTCTCTGTTTCTGTCGAAGGACCATATGGTCCTACTTCAATAGATTTCCTAAGGCACGA 1354
Query 1326 AG-CTTTGGTTATGGTGT-GCGGAGGAAGCGGGATAACTCCGTTTATCTCTGTTATTCGT 1383
| ||||||||||||| | ||||||| ||||| || || || || ||||| || || ||
Sbjct 1355 -GTCTTTGGTTATGGT-TAGCGGAGGCAGCGGAATTACACCATTCATCTCCGTAATCCGC 1412
Query 1384 GATTTGATCGCCACAAGCCAAA-AGGAAACATGCAAAATCCCAAAAATAACTCTCATTTG 1442
|| || ||||||| || ||||| | |||| ||||||| ||||||||||| |||||
Sbjct 1413 GACTTAATCGCCATAACCCAAACAACTT-CATGTGAAATCCCCAAAATAACTCTGATTTG 1471
Query 1443 TGCGTTTAAGAA-GTCTTCAGAGATCTCCATGCTCGATCTTGTCTTGCC-ATTATCCGGT 1500
||| || ||||| | |||| || ||| ||||||| || || || | || | ||| |||
Sbjct 1472 TGCATTCAAGAACG-CTTCTGACATCGCCATGCTTGACCTAATCCTCCCTAC-ATCAGGT 1529
Query 1501 CTTGAGACTGAACTATCCTCCGACATTAACATCAAAATCGAAGCCTTCATAACCCGAGAT 1560
|| | | | | | | | | ||| | || ||| |||||||||||||||| ||| |||
Sbjct 1530 CTCCA-ATT-ATCAA-C-T--GACCTGAATATCCAAATCGAAGCCTTCATCACCAAAGAG 1583
Query 1561 AATGATGCAGGAGATGAAGCAAA-AGCTGGGAAAATCAAAACTC-TCTGGTTCAAACCAA 1618
|| || || || | |||| ||| | | | || |||| ||| | |||||||||||||||
Sbjct 1584 AAAGAACCAAGAAACGAAG-AAACA-CAG--AAGATCAGAAC-CATCTGGTTCAAACCAA 1638
Query 1619 GTCTTTCAGACCAATCCA-TCTCATCAATCCTCGGACCAAACTCATGGCTTTGGCTCGGT 1677
||| || |||||| ||| ||||| ||||||| |||||||||||||||||||| ||||
Sbjct 1639 ATCTCTCGGACCAA-CCAATCTCAGCAATCCTAGGACCAAACTCATGGCTTTGCCTCGCA 1697
Query 1678 GCAATTCTCGCATCTTCGTT-CTTGATCTTCATGATAATTATTGGTA-TCATCACTAGGT 1735
|| || ||||||||||| || |||||||||||||| || || | |||| || || |
Sbjct 1698 GCCATCCTCGCATCTTCCACACTA-ATCTTCATGATAATCATCGG-AGTCATGACAAGAT 1755
Query 1736 ATTACATTTACCCGATCGACCACAACACCAACAAG-ATCTATTCTTTGACTTCAAAAACC 1794
| ||||||||||||||||| || |||| |||||| | | || || | |||||| | |
Sbjct 1756 ACTACATTTACCCGATCGATCAAAACAAGAACAAGTA-CAATGCT--G-CTTCAAGATCA 1811
Query 1795 ATCATATATAT-CTTGGTCATCTCCGTGAGCATAATGGCGACTTGTAGTGCGGCTATGTT 1853
||| | ||| | || |||| ||| || ||||| |||| ||| | ||||| ||| | ||
Sbjct 1812 ATCCTTTATCTTCT-GGTCCTCTGTGTTAGCATCATGGTGACGTCAAGTGCAGCTGTATT 1870
Query 1854 GTGGAACAAGAAGAAGTA---TGGTAAAGTTGAAAGTAAACAGGTCCAAAACGTCGACCG 1910
|||||| ||||||||||| || || || | | ||||||||||||||| ||||||| |
Sbjct 1871 GTGGAATAAGAAGAAGTACAATG-TAGAGA-GCA-GTAAACAGGTCCAAACCGTCGAC-G 1926
Query 1911 T-CCAT-CTCCAACATCTTCTCCTACCTCATCATGGGGTTACAATTCCTTGAGAGAAATC 1968
| ||| | ||||||| |||||||| ||||| ||| ||||| |||| || |
Sbjct 1927 TACCAAGC-CCAACATTTTCTCCTAGCTCAT---GGGCTTACA-------GAGA-AATT- 1973
Query 1969 GAAAGTACGCCACAAGAATCGCTCGTGCAACGCACCAATCTGCATTTTGGAGAAAGACCT 2028
|| |||| || ||||| || || || ||| ||||||| || ||||| || ||||||||
Sbjct 1974 GAGAGTAATCCTCAAGAGTCACTTGTTCAATGCACCAACCTCCATTTCGGTGAAAGACC- 2032
Query 2029 A-ATCTCAAGAA-ACTTCTACTTGATGTGGAA-GGTTCGAGTGTGGGAGTTCTTGTTTGT 2085
| | |||||||| | |||||||||| | || ||||| || ||||||||| | || ||
Sbjct 2033 AGACCTCAAGAAGA-TTCTACTTGA-GACCAAAGGTTCAAGCGTGGGAGTTATGGTGTGC 2090
Query 2086 GGTCCTAAGAAGATGAGACAAAAGGTTGCGGAA-ATATGTTCCTCTGGTTTGGCTGAGAA 2144
||||| ||||||||||||||||| || || || || ||||| |||||||||||||||||
Sbjct 2091 GGTCCGAAGAAGATGAGACAAAAAGTGGCC-AAGATTTGTTCTTCTGGTTTGGCTGAGAA 2149
Query 2145 TCTTCATTTTGAATCTATCAGTTTCAGCTGGTGATTGC 2182
|||||| |||||||| ||||||||||||||||||||||
Sbjct 2150 TCTTCACTTTGAATCCATCAGTTTCAGCTGGTGATTGC 2187
> Ahg909813 jgi|Araly1|909813|Al_scaffold_0001_67
Length=2115
Score = 671 bits (363), Expect = 0.0
Identities = 1118/1470 (76%), Gaps = 101/1470 (7%)
Strand=Plus/Plus
Query 352 AAG-CCAATGTTAGTGAAGGGGCCATTAGGAATAGTCTCAGTGACTGAGATCACCTTCTT 410
||| ||||||||||||||||| |||||||||||||| ||||||||||| | | |||||
Sbjct 321 AAGACCAATGTTAGTGAAGGGACCATTAGGAATAGTGACAGTGACTGAGGTTATGTTCTT 380
Query 411 GGCGATGTTTGTGGCTCTTCTTCTCTGGTGCTTTATCACTT--ATTTGCGCAATAGC-TT 467
| ||||||| ||||||||||||| ||| |||| | || || |||| || | | ||
Sbjct 381 GACGATGTTCATGGCTCTTCTTCTTTGGAGCTTAACCAATTACATTT--ACAGGA-CGTT 437
Query 468 CGCCACTATCACTCCTAAATCAGCTGCCGCACATGAC-G-AAT--CTTTGTGGCAAGCGA 523
| ||| |||||| || ||||||| | | || |||| | ||| | | ||||||||||
Sbjct 438 TGTCACCATCACTTCTGAATCAGCAG-C-AAC-TGACGGAAATAAC-CTATGGCAAGCGA 493
Query 524 AGCTGGAATCAGCGGC-GCTAAGGTTAGG-ACTGA-TCGGAAACATATGTTTGGCGTTCT 580
|||||| | | || | || || |||| | | | | || |||||||| ||||||||||
Sbjct 494 GGCTGGATTTAATAGCAG-TACGGCTAGGTA-T-AGTAGGGAACATATGCTTGGCGTTCT 550
Query 581 TGTTCTTA-CCGGTGGCTCGTGGGTCATCGTTGCTACCGGCAAT-GGGATTAACCTCGGA 638
||||| || || ||||||| ||| || |||||||| | ||| | ||| || || |||||
Sbjct 551 TGTTC-TATCCAGTGGCTCCTGGCTCGTCGTTGCTGGCTGCAGTGGGGCTT-ACGTCGGA 608
Query 639 GTCAAGCATCAAATACCATATATGGCTCGGCCACATGGTCATGGCCCTT-TTCACC-GTT 696
|||||||||||| |||||||||||||| || ||| ||||||| | ||| |||||| |
Sbjct 609 GTCAAGCATCAAGTACCATATATGGCTGGGACACTTGGTCAT-GATCTTATTCACCAG-C 666
Query 697 CATGGTCTTTGTTACATAATTTACTGGGCCT-CAATGCATGAA--A-TCTCCCAGATGAT 752
|| ||||| |||||| | || || ||| | ||| | || || | ||||||||||| |
Sbjct 667 CACGGTCTCTGTTACTTTATCTATTGGATATCCAA-GAATCAATTATTCTCCCAGATGTT 725
Query 753 -CATGTGGGATACGAAAGGTGTCTCAAATTTGGCCGGAGAGATAGCTCTGGCGGCCGGAC 811
| |||||||| || |||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 726 GGA-GTGGGATAGGACCGGTGTCTCGAATTTAGCCGGAGAGATAGCTCTGGTGGCCGGAC 784
Query 812 TTGTGATGTGGGCCACCACATATCCGAAGATAAGGAGAAGATTCTTCGAAGTCTTCTTCT 871
|| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 785 TTATGATGTGGGTCACCACATATCCGAAGATAAGGAGGAGATTCTTCGAAGTCTTCTTTT 844
Query 872 ACACTCACTATCTCTACATCGTCTTCATGCTCTTCTTTGTCCTCCACGTCGGCATAAGTT 931
| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 845 ATACTCATTATCTCTACATCGTCTTCATGCTCTTCTTCGTCTTCCACGTCGGCATC--TC 902
Query 932 TC-TCC-TTCATCGCTCT-CCCTGGTTTCTACATCTTCTTAGTCGATCGTTTCCTTCG-G 987
|| | | || || || | ||| ||||||||||||||| | |||||||||||| || | |
Sbjct 903 TCATGCGTTGATTTCTTTTCCC-GGTTTCTACATCTTCCTCGTCGATCGTTTC-TT-GAG 959
Query 988 TT-TCTTCAGTCACGTGAA-AATGTTC--GCTTGCTCGCTGCTCG-GATTCTTCCTTCCG 1042
| |||||||||||| || ||||| | ||| | || ||||||| | ||||||||| |
Sbjct 960 ATCTCTTCAGTCACGC-AACAATGT-CAAGCTAG-TCTCTGCTCGTG-TTCTTCCTTGTG 1015
Query 1043 ACACTATGGAGCTCACTTTCTCCAAAAACTCTAAGTTGGTTTATAGCCCGACGAGCA-TA 1101
|||| | ||||||| ||||||||||||| ||| |||| | ||||||||||| |||| ||
Sbjct 1016 ACACCGTTGAGCTCAATTTCTCCAAAAACCCTATGTTGATGTATAGCCCGACAAGCACTA 1075
Query 1102 ATGTTTGTGAACATACCGAGCATTTCAAAGCTGCAATGGCATCCGTTTACGATAACTTCC 1161
|||| |||||||||| ||| ||||| ||||| || |||||||| |||||||||| |||
Sbjct 1076 -TGTTCGTGAACATACAGAGTATTTCGAAGCTTCAGTGGCATCCATTTACGATAATTTCT 1134
Query 1162 AGTAGCAAACTCGAACCAGAGAAGCT-AAGTATTGTTATCAAGAAAGAAGGCAAATGGTC 1220
|||||||||||||||||||||| || |||| || | ||||||| |||| ||||||||
Sbjct 1135 AGTAGCAAACTCGAACCAGAGAC-CTTAAGTGTTATGATCAAGAGCCAAGGAAAATGGTC 1193
Query 1221 AACTAAGCTTCACCAGAGGCTTTCTTC-T-T-C-T--GATCAGATCGACCGACTTGCTGT 1274
| ||||||| || | | ||||||||| | | | | ||||| ||| | || || |||||
Sbjct 1194 CAGTAAGCTTTACGATATGCTTTCTTCATCTTCCTCTGATCAAATCAATCGCCTAGCTGT 1253
Query 1275 TTCTGTAGAAGGTCCTTACGGCCCT-GCTTCCGCCGATTTCTTAAGGCATGAAGCTTTGG 1333
||| | || || || ||||||||| | |||| | |||||| || | ||||| || |||
Sbjct 1254 TTCCATCGAGGGACCCTACGGCCCTAG-TTCCACTGATTTCCTACGACATGACTCTCTGG 1312
Query 1334 TTATGGTGTGCGGAGGAAGCGGGATAACTCCGTTTATCTCTGTTATTCGTGATTTGATCG 1393
| |||||| | ||||| || || || || ||||||||||| | || || || | ||
Sbjct 1313 TGATGGTGAGTGGAGGCAGTGGCATTACACCGTTTATCTCCATAATCCGCGACCT-ATA- 1370
Query 1394 CCACA--AGC-CAAAAGGA-AACATGCAAAATCCCAAAAATAACTCTCATTTGTGCGTTT 1449
| ||| || ||| | | || ||| | |||||| ||||| || || || || || ||
Sbjct 1371 CTACATGAGTTCAAC-GCACAA-ATGTACAATCCCTAAAATGACCCTAATCTGCGCCTTC 1428
Query 1450 AAGAAGTCTTCAGAGATCTCCATGCTCGATCTTGTCTTGCC-ATTATCCGGTCTTGAG-A 1507
|| || ||||| || | |||||||| || || || | || | ||||||| | |
Sbjct 1429 AAAAACTCTTCCGACCTTTCCATGCTTGACCTAATCCTACCGACCC-CCGGTCTC-ACCA 1486
Query 1508 CTGA-ACTATCCTCCGACAT-TA-ACATCAAAATCGAAGCCTTCATAACCCGAGAT-A-A 1562
| || | | ||||| | | || | ||| | ||| |||||||| | |||||||| | |
Sbjct 1487 CCGACA-TCTCCTC-GTT-TGTAGATATCCATATCAAAGCCTTCGTTACCCGAGAGGAGA 1543
Query 1563 TGATGC-AGGAGATGAAGCAA---A-AGCTGGGAA-A--ATCAAAACTCTCTGGTTCAAA 1614
| | || | | ||| ||| | | | |||| | |||||||| || | ||||||
Sbjct 1544 AAAACCCAGTAAAAGAATCAACTCACAA-TAGGAATATCATCAAAACCCTATATTTCAAA 1602
Query 1615 CCAA--GTCTTTCAGACCAATCCATCTCATCAATCCTCGGACCAAACTCATGGCTTTGGC 1672
|||| |||| |||||||| |||||||| |||||||||| || ||||| ||||| || |
Sbjct 1603 CCAAACGTCT--CAGACCAACCCATCTCACCAATCCTCGGGCCCAACTCTTGGCTCTGTC 1660
Query 1673 TCGGTGCAATTCTCGCATCTTCGTTCTTGATCTT-CATGATAATTATTGGTATCATCACT 1731
| | | || ||| | ||||| ||| ||||||| | || || | || | ||||| ||
Sbjct 1661 TTGCAACCATCCTCTCTTCTTCCTTCATGATCTTTCTTGTTA-TCATCGCAATCATAACG 1719
Query 1732 AGGTATTACATTTACCCGATCGACCACAAC 1761
|| ||| |||| ||||| ||||| || |||
Sbjct 1720 AGATATCACATCTACCCAATCGATCAAAAC 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90769053835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5