BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01590.1
Length=2115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909813 jgi|Araly1|909813|Al_scaffold_0001_67 3241 0.0
Ahg472552 jgi|Araly1|472552|fgenesh2_kg.1__2506__AT1G23020.1 2108 0.0
> Ahg909813 jgi|Araly1|909813|Al_scaffold_0001_67
Length=2115
Score = 3241 bits (1755), Expect = 0.0
Identities = 1999/2119 (94%), Gaps = 8/2119 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGTAGGAGAAATGAATAAGGAAGTGATTGATAAGGTGATTAAGTTCTTGATGATG 60
|||||| |||||||||||||||||||||||| ||| ||||||||||||||| | | |||
Sbjct 1 ATGGGATTAGGAGAAATGAATAAGGAAGTGACTGAGAAGGTGATTAAGTTCGTAACAATG 60
Query 61 GTGATTTTGATGGGGACTATAGTGATCTGGATTATGATGCCAACTTCTACCTACAAGGAA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GTGATTTTGATGGGGACTATAGTGATCTGGATTATGATGCCAACATCTACCTACAAGGAA 120
Query 121 ATCTGGTTAACCTCTATGCGTGCCAAGCTCGGCAAATCGATATACTATGGGAGACCAGGA 180
|||||||||||| | |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 121 ATCTGGTTAACCCCCATGCGTGCCAAGCTCGGCAAATCGATTTACTATGGGAAACCAGGA 180
Query 181 GTGAATCTTTTGGTTTACATGTTCCCGATGATTCTACTGGCTTTTCTGGGATGTATCTAC 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGAACCTTTTGGTTTACATGTTCCCGATGATTCTACTGGCTTTTCTGGGATGTATCTAC 240
Query 241 CTTCACTTGAAGAAATC-AACAACTGTTAATCAATTTAACAGCGGAGTGGAGAAGAAGAG 299
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCACTTGAAGAAA-CAAACAACTGTTAATCAATTTAACAGCGGAGTGGAGAAGAAGAG 299
Query 300 AGCCAAGTTTGGTGCATTGAGAAGACCAATGTTAGTGAACGGACCGTTAGGAATAGTGAC 359
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 300 AGCCAAGTTTGGTGCTTTGAGAAGACCAATGTTAGTGAAGGGACCATTAGGAATAGTGAC 359
Query 360 AGTAACTGAGGTTATGTTCTTGACGATGTTCATGGCTCTTCTTCTTTGGAGCTTAGCTAA 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 360 AGTGACTGAGGTTATGTTCTTGACGATGTTCATGGCTCTTCTTCTTTGGAGCTTAACCAA 419
Query 420 TTACATGTACAGGACGTTTGTCAACGTCACTTCTGAATCAGCAGCAACTGACGGAAATAA 479
|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 420 TTACATTTACAGGACGTTTGTCACCATCACTTCTGAATCAGCAGCAACTGACGGAAATAA 479
Query 480 CCTATGGCAAGCGAGGCTGGATTTAATAGCAGTACGGATAGGTATAGTAGGGAACATATG 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 CCTATGGCAAGCGAGGCTGGATTTAATAGCAGTACGGCTAGGTATAGTAGGGAACATATG 539
Query 540 CTTGGCGTTCTTGTTCTATCCAGTGGCTCGTGGCTCGTCGTTGCTGGCTGCAGTGGGGCT 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 CTTGGCGTTCTTGTTCTATCCAGTGGCTCCTGGCTCGTCGTTGCTGGCTGCAGTGGGGCT 599
Query 600 TACGTCTGAGTCAAGCATCAAGTACCATATATGGTTGGGGCACTTGGTCATGATCATATT 659
|||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 600 TACGTCGGAGTCAAGCATCAAGTACCATATATGGCTGGGACACTTGGTCATGATCTTATT 659
Query 660 CACCAGCCATGGTCTTTGTTACTTTATCTATTGGATATCCAAGAATCAATTAGTCTCAAA 719
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |
Sbjct 660 CACCAGCCACGGTCTCTGTTACTTTATCTATTGGATATCCAAGAATCAATTATTCTCCCA 719
Query 720 GATGTTGGAGTGGGATAGGACCGCTGTCTCGAATTTAGCCGGAGAGATAGCTCTGGTGGC 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 GATGTTGGAGTGGGATAGGACCGGTGTCTCGAATTTAGCCGGAGAGATAGCTCTGGTGGC 779
Query 780 TGGACTTATGATGTGGGTCACCACATATCCTAAGATAAGGAGGAGATTGTTCGAAGTCTT 839
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 780 CGGACTTATGATGTGGGTCACCACATATCCGAAGATAAGGAGGAGATTCTTCGAAGTCTT 839
Query 840 CTTCTATAGTCATTATCTCTATATCGTCTTCATGCTCTTCTTCGTCTTCCACGTCGGCAT 899
||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTTTATACTCATTATCTCTACATCGTCTTCATGCTCTTCTTCGTCTTCCACGTCGGCAT 899
Query 900 CTCTCATGCGTTGATCCCTTTACCCGGTTTCTACATCTTCCTCGTCGATCGTTTCTTGAG 959
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTCTCATGCGTTGATTTCTTTTCCCGGTTTCTACATCTTCCTCGTCGATCGTTTCTTGAG 959
Query 960 ATTTCTCCAGTCACGCAACAATGTCAAGCTAGTCTCTGCTCGTGTTCTTCCTTGTGACAC 1019
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATCTCTTCAGTCACGCAACAATGTCAAGCTAGTCTCTGCTCGTGTTCTTCCTTGTGACAC 1019
Query 1020 CGTTGAGCTCAATTTCTCCAAAAACCCTATGTTGATGTATAGCCCGACAAGCACTATGTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CGTTGAGCTCAATTTCTCCAAAAACCCTATGTTGATGTATAGCCCGACAAGCACTATGTT 1079
Query 1080 CGTGAACATACCGAGTATTTCGAAGCTTCAGTGGCATCCATTTACAATAATTTCTAGTAG 1139
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 CGTGAACATACAGAGTATTTCGAAGCTTCAGTGGCATCCATTTACGATAATTTCTAGTAG 1139
Query 1140 CAAACTCGAACCAGAGACGTTAAGTGTTATGATCAAGAGCCAAGGAAAATGGTCGACTAA 1199
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 1140 CAAACTCGAACCAGAGACCTTAAGTGTTATGATCAAGAGCCAAGGAAAATGGTCCAGTAA 1199
Query 1200 GCTTTACGATATGCTTTCTTCATCTTCTTCTGATCAAATCAATCGCCTCGCTGTTTCCGT 1259
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 1200 GCTTTACGATATGCTTTCTTCATCTTCCTCTGATCAAATCAATCGCCTAGCTGTTTCCAT 1259
Query 1260 CGAGGGACCCTACGGCCCTAGTTCCACTGATTTCCTACGACATGAATCTCTGGTGATGGT 1319
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 CGAGGGACCCTACGGCCCTAGTTCCACTGATTTCCTACGACATGACTCTCTGGTGATGGT 1319
Query 1320 GAGTGGAGGCAGTGGAATTACACCGTTTATCTCCATAGTCCGCGACCTATTCTACATGAG 1379
||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1320 GAGTGGAGGCAGTGGCATTACACCGTTTATCTCCATAATCCGCGACCTATACTACATGAG 1379
Query 1380 TTCAACGCACAAATGTAAAATCCCCAAGATGACCCTGATCTGCGCGTTCAAAAACTCTTC 1439
||||||||||||||||| |||||| || |||||||| |||||||| ||||||||||||||
Sbjct 1380 TTCAACGCACAAATGTACAATCCCTAAAATGACCCTAATCTGCGCCTTCAAAAACTCTTC 1439
Query 1440 CGACCTATCCATGCTCGACCTAATTCTACCCACCTCTGGTCTCACCACCGACATGGCCTC 1499
|||||| |||||||| |||||||| ||||| ||| | ||||||||||||||||| ||||
Sbjct 1440 CGACCTTTCCATGCTTGACCTAATCCTACCGACCCCCGGTCTCACCACCGACATCTCCTC 1499
Query 1500 GTTTGTAGATATCCAGATCAAAGCCTTCGTCACCCGAGAAGAGAAAACATC-AGTAAAAG 1558
||||||||||||||| |||||||||||||| |||||||| ||||||| | | ||||||||
Sbjct 1500 GTTTGTAGATATCCATATCAAAGCCTTCGTTACCCGAGAGGAGAAAA-ACCCAGTAAAAG 1558
Query 1559 AATCAACTCACAATAGGAATATCATCAAAACCCGACATTTCAAACCAAACGTCTCAGACC 1618
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1559 AATCAACTCACAATAGGAATATCATCAAAACCCTATATTTCAAACCAAACGTCTCAGACC 1618
Query 1619 AGCCCATCTCACCAATCCTCGGGCCCAACTCTTGGCTCTGTCTTGCAGCCATCCTCTCTT 1678
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1619 AACCCATCTCACCAATCCTCGGGCCCAACTCTTGGCTCTGTCTTGCAACCATCCTCTCTT 1678
Query 1679 CTTCCTTCATGATCTTTATTGTCATCATCGCAATCATCACGAGATATCACAT-TCACCCA 1737
||||||||||||||||| |||| |||||||||||||| |||||||||||||| | |||||
Sbjct 1679 CTTCCTTCATGATCTTTCTTGTTATCATCGCAATCATAACGAGATATCACATCT-ACCCA 1737
Query 1738 ATCGATCAAAACTCGGAAAAGTACACTTGGGCTTATAAATCGCTCATTTACCTTGTATCA 1797
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1738 ATCGATCAAAACTCGGAAAAGTACACTTGGGCTTATAAATCGCTCATTTACCTTATATCG 1797
Query 1798 ATCTCCATTACCGTGGTGACTACTTCTACGGCTGCTATGTTGTGGAACaaaaaaaaGTAC 1857
|||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 1798 ATCTCCATTAGCGTGGTGACTACTTCTACAGCTGCCATGTTGTGGAACAAAAAAAGGTAT 1857
Query 1858 TATGCGAAAAATGACCAATATGTCGACAACTTATCTCCGGTGATTATCGAGAGCTCGCCG 1917
|||||||||| ||||||| ||||||||| || |||||| |||||||||||||||| |||
Sbjct 1858 TATGCGAAAAGCGACCAATCTGTCGACAATTTGTCTCCGTTGATTATCGAGAGCTCACCG 1917
Query 1918 CAGCAATTGATATCGCAATCTACCGACATTCATTACGGAGAGAGGCCTAACCTTAACAAG 1977
|| |||||| |||||||||| ||||||||| | ||||||||||||||||| |||||||||
Sbjct 1918 CAACAATTGTTATCGCAATCCACCGACATTTACTACGGAGAGAGGCCTAATCTTAACAAG 1977
Query 1978 CTTCTAGTTGGTTTAAAGGGTTCGAGCGTGGGAATTCTTGTGTGTGGTCCGAAGAAGATG 2037
|||||||||||| || |||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1978 CTTCTAGTTGGTGTACCGGGTTCGAGCGTGGGAGTTCTTGTGTGTGGTCCGAGGAAGATG 2037
Query 2038 AGACAAAAGGTAGCGAAGATCTGTTCTTTTGGTTCTG-CTGAGAATCTTCACTTTGAATC 2096
|||||| |||||||||| || ||||| || |||| || ||||||||||||| ||||||||
Sbjct 2038 AGACAAGAGGTAGCGAATATTTGTTCGTTAGGTT-TGGCTGAGAATCTTCAGTTTGAATC 2096
Query 2097 TATTAGTTTTAGCTGGTGA 2115
|||||||||||||||||||
Sbjct 2097 TATTAGTTTTAGCTGGTGA 2115
> Ahg472552 jgi|Araly1|472552|fgenesh2_kg.1__2506__AT1G23020.1
Length=2189
Score = 2108 bits (1141), Expect = 0.0
Identities = 1825/2145 (85%), Gaps = 87/2145 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGTAGGAGAAATGAATAAGGAAGTGATTGATAAGGTGATTAAGTTCTTGATGATG 60
|||| | ||||||||||||||||| ||||||| | || ||||||||| |||| | ||||
Sbjct 1 ATGGTATTAGGAGAAATGAATAAGAAAGTGATCAAGAATGTGATTAAGCTCTTAACGATG 60
Query 61 GTGATTTTGATGGGGACTATAGTGATCTGGATTATGATGCCAACTTCTACCTACAAGGAA 120
|||||||||||||| ||| | ||||| ||||| ||||||||||| ||||| |||||| ||
Sbjct 61 GTGATTTTGATGGGTACTGTTGTGATTTGGATCATGATGCCAACGTCTACTTACAAGAAA 120
Query 121 ATCTGGTT-AACCTCTATGCGTGCCAAGCTCGGCAAATCGATATACTATGGGAGACCAGG 179
|||||||| || || |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 121 ATCTGGTTGAA-ATCCATGCGTGCCAAGCTCGGCAAATCGATTTACTATGGGAAACCAGG 179
Query 180 AGTGAATCTTTTGGTTTACATGTTCCCGATGATTCTACTGGCTTTTCTGGGATGTA-TCT 238
|||||| |||||||||||||||||||| |||||||||||||||||||| |||| || ||
Sbjct 180 AGTGAACCTTTTGGTTTACATGTTCCCAATGATTCTACTGGCTTTTCTTGGATCTATTC- 238
Query 239 ACCTTCACTTGAAGAAATC-AACAACTGTTAATCAATTTAACA---GCGGAGT-G-GA-G 291
||||||||||||||||| | ||| || || || |||||||| | | ||||| | || |
Sbjct 239 ACCTTCACTTGAAGAAA-CAAACGACAGTAAACCAATTTAATAGTGGTGGAGTGGAGAGG 297
Query 292 AAGAAGAGAGCCAAGTTTGGTGCATTGAGAAGACCAATGTTAGTGAACGGACCGTTAGGA 351
|||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||
Sbjct 298 AAGAAGAGAGATAAGTTTGGTGCATTGAAAAGACCAATGTTAGTGAAGGGA---TTAGGA 354
Query 352 ATAGTGACAGTAACTGAGGTTATGTTCTTGACGATGTTCATGGCTCTTCTTCTTTGGAGC 411
||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 355 ATAGTGACAGTGACTGAAGTTATGTTCTTGACGATGTTCATGTCTCTTCTTCTTTGGAGT 414
Query 412 TTAGCTAATTACATGTAC-AGGACGTTTGTCAACGTCACTTCTGAATCAGCAGCAACT-G 469
||||| |||||| | ||| | || ||||||| | ||||| || || || ||| | |
Sbjct 415 TTAGCCAATTACTTTTACTA-TACCTTTGTCACCATCACTCCTCAAACAATTCCAA-TCG 472
Query 470 ACGGAAATAACCTATGGCAAGCGAGGCTGGATTTAATAGCAGTACGGATAGGTATAGTAG 529
||||| ||||| ||||||||||||||||||||| |||||||||| || ||||| || ||
Sbjct 473 ACGGAGATAACTTATGGCAAGCGAGGCTGGATTCAATAGCAGTAAGGTTAGGTCTAACAG 532
Query 530 GGAACATATGCTTGGCGTTCTTGTTCTATCCAGTGGCTCGTGGCTCGTCGTTGCTGGCTG 589
||||||||||||||| ||||||||||||||| ||| | |||||||| |||||||||||||
Sbjct 533 GGAACATATGCTTGGGGTTCTTGTTCTATCCGGTGTCGCGTGGCTCATCGTTGCTGGCTG 592
Query 590 CAGTGGGGCTTACGTCTGAGTCAAGCATCAAGTACCATATATGGTTGGGGCACTTGGTCA 649
|||| ||||||||||| |||||||||| || ||||||||||||| | || ||||||||||
Sbjct 593 CAGTTGGGCTTACGTCGGAGTCAAGCACCAGGTACCATATATGGCTCGGTCACTTGGTCA 652
Query 650 TGATCATATTCACCAGCCATGGTCTTTGTTACTT-TATCTATTGGATATCCA-AGAATCA 707
||| | |||| |||||||| ||||||||||| || ||||||||||||||||| | ||||
Sbjct 653 TGACCTTATTGACCAGCCACGGTCTTTGTTA-TTGTATCTATTGGATATCCACA-AATC- 709
Query 708 ATTAGTCTCAAAGATGTTGGAGTGGGATAGGACCGCTGTCTCGAATTTAGCCGGAGAGAT 767
| |||||| |||||||||||||||||||||||| | ||||| ||||||||||||| ||
Sbjct 710 A--AGTCTCTCAGATGTTGGAGTGGGATAGGACCGGTATCTCGCATTTAGCCGGAGAAAT 767
Query 768 AGCTCTGGTGGCTGGACTTATGATGTGGGTCACCACATAT-CCTAAGATAAGGAGGAGAT 826
| |||||||||| || ||| ||||||||| |||||||| | || ||| || |||||||
Sbjct 768 AACTCTGGTGGCCGGGCTTGTGATGTGGGCCACCACAT-TCCCGGCGATTAGAAGGAGAT 826
Query 827 TGTTCGAAGTCTTCTTCTATAGTCATTATCTCTATATCGTCTTCATGCTCTTCTTCGTCT 886
| ||||||||||||||||||| |||||||||||| || ||||||||||||||||| ||||
Sbjct 827 TCTTCGAAGTCTTCTTCTATACTCATTATCTCTACATTGTCTTCATGCTCTTCTTTGTCT 886
Query 887 TCCACGTCGGCATCTCTCATGCGTTGATC-CCTTTACCCGGTTTCTACATCTTCCTCGTC 945
||||||| ||||||||| | ||||||||| | ||| || ||||||||||||||| |||||
Sbjct 887 TCCACGTTGGCATCTCTTACGCGTTGATCTCATTT-CCTGGTTTCTACATCTTCATCGTC 945
Query 946 GATCGTTTCTTGAGATTTCTCCAGTCACGCAACAATGTCAAGCTAGTCTCTGCTCGTGTT 1005
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 946 GATCGTTTCTTGAGATTTCTCCAGTCGCGGAACAATGTCAAGCTAGTCTCTGCTCGTGTT 1005
Query 1006 CTTCCTTGTGACACCGTTGAGCTCAATTTCTCCAAAAACCCTATGTTGATGTATAGCCCG 1065
||||||||||| || || ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1006 CTTCCTTGTGAAACTGTCGAGCTCAATTTCTCCAAAAGCCCTATGCTGATGTATAGCCCG 1065
Query 1066 ACAAGCACTATG-TTCGTGAACATACCGAGTATTTCGAAGCTTCAGTGGCATCCATTTAC 1124
|| || | ||| |||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1066 ACGAGTA-TATTATTCGTGAACATACCGAGTATTTCGAAACTGCAATGGCATCCATTTAC 1124
Query 1125 AATAATTTCTAGTAGCAAACTCGAACCAGAGACGTTAAGTGTTATGATCAAGAGCCAAGG 1184
||||||||| |||||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct 1125 AATAATTTCGAGTAGCAAACTCGAACCAAAAAAGCTAAGTGTTATGATCAAGAGCCAAGG 1184
Query 1185 AAAATGGTCGACTAAGCTTTACGATATGCTTTCTTCATCTTCTTCTGATCAAATCAATCG 1244
|||||||| ||||||||| || |||||||| ||| || | || ||||| ||| | |
Sbjct 1185 CAAATGGTCCACTAAGCTTAACCATATGCTTGCTT-AT-T-CT---GATCAGATCGACCA 1238
Query 1245 CCTCGCTGTTTCCGTCGAGGGACCCTACGGCCCTAG-TTCCACTGATTTCCTACGACATG 1303
||| ||||||||||||||||||||||| |||||| | |||||| |||| ||||||||||
Sbjct 1239 CCTTGCTGTTTCCGTCGAGGGACCCTATGGCCCT-GCTTCCACCGATTACCTACGACATC 1297
Query 1304 AATCTCTGGTGATGGTGAGTGGAGGCAGTGGAATTACACCGTTTATCTCCATAGTCCGCG 1363
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| | || |
Sbjct 1298 AATCTCTGGTGATGGTGAGTGGAGGTAGTGGGATTACACCGTTCATCTCCATAATTCGGG 1357
Query 1364 ACCTATTCTACATGAGTTCAACGCA-CAAATGTAAAATCCCCAAGATGACCCTGATCTGC 1422
||||| ||||| | || |||||| | | ||||||||||||||||| ||| | || |||
Sbjct 1358 ACCTACTCTACGTAAGCTCAACG-AGCGCTTGTAAAATCCCCAAGATAACCTTAATATGC 1416
Query 1423 GCGTTCAAAAACTCTTCCGACCTATCCATGCTCGACCTAATTCTACCCACCTCTGGTCTC 1482
|||||||| | |||||||||||| || |||||| ||||||| || ||| ||||||
Sbjct 1417 GCGTTCAAGACCTCTTCCGACCTCTCAATGCTCAACCTAAT-CTT---ACC---GGTCTC 1469
Query 1483 ACCACCGACATGGCCTCGTTTGTAGATATCCAGATCAAAGCCTTCGTCACCCGAGAAGAG 1542
| ||||| || |||| | ||||||||| |||||||||||||||||||||||||| ||
Sbjct 1470 -C-ACCGAGATATCCTCCTATGTAGATATTCAGATCAAAGCCTTCGTCACCCGAGA-GA- 1525
Query 1543 AAAACATCAGTAAAAGAATCAACTCACAATAGGAATATCATCAAAACCCGACA-TTTCAA 1601
|| ||| |||||| ||||| ||||||||||||||||| | ||||||
Sbjct 1526 AA-------GTA------TCAACTTGCAATATGAATATCATCAAAACCCT-CTGTTTCAA 1571
Query 1602 ACCAAACGTC-TCAGACCAGCCCATCTCACCAATCCTCGGGCCCAACTCTTGGCTCTGTC 1660
|||| | || |||||||| ||||||||||||||||| || | ||||| ||||| || |
Sbjct 1572 ACCACAT-TCCTCAGACCAACCCATCTCACCAATCCTTGGACGTAACTCCTGGCTATGGC 1630
Query 1661 TTGC-AGCCATCCTCTCTTCTTCCTTCATGATCTTTATTGTCATCATCGCAATCATCACG 1719
| || | |||||||||| ||||| ||| ||||||||||| ||||||||||||||||| |
Sbjct 1631 TCGCCA-CCATCCTCTCCTCTTCATTCGTGATCTTTATTATCATCATCGCAATCATCTCA 1689
Query 1720 AGATATCACATTCACCCAATCGATCAAAACTCGGAAAAGTACACTTGGGCTTATAAATCG 1779
|||||||||||| ||||||||||||||| |||| |||||||||||| ||||||| |||
Sbjct 1690 AGATATCACATTAACCCAATCGATCAAAGCTCGAAAAAGTACACTTCTGCTTATACATCT 1749
Query 1780 CTCATTTACCTTGTATCAATCTCCATTACCGTGGTGACTACTTCTACGG-CTGCTATGTT 1838
|||||||||||| || |||||||||||| ||||||| |||| ||||||| | ||||||||
Sbjct 1750 CTCATTTACCTTCTAGCAATCTCCATTAGCGTGGTGGCTACGTCTACGGTC-GCTATGTT 1808
Query 1839 GTGGAACaaaaaaaaGT-ACTATG-CGAAAAATGACCAATATGTCGACAACTTAT---CT 1893
||| |||||||| | || | ||| | ||||| |||||| | ||||| | |||| ||
Sbjct 1809 GTGTAACAAAAAGA-GTTATTATAAC-AAAAAGGACCAAAACATCGACGATTTATTGTCT 1866
Query 1894 CCGGTGATTATCGAGAGCTCGCCGCAG-CAATTGATATCGCAAT-CTACCGACATTCATT 1951
||| |||| |||||||||||||| | | || ||| || || ||| | ||| |||||||||
Sbjct 1867 CCGTTGATGATCGAGAGCTCGCC-CGGTCAGTTGCTACCGGAATTC-ACCAACATTCATT 1924
Query 1952 ACGGAGAGAGGCCTAACCTTAACAAGCTTCTAGTTGGTTTAAAGGGTTCGAGCGTGGGAA 2011
| ||||| || ||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1925 ATGGAGAAAGACCTAATCTTAACAAGCTCCTAGTTGGTTTAAAGGGTTCGAGCGTCGGAG 1984
Query 2012 TTCTTGTGTGTGGTCCGAAG-AAGATGAGACAAAAGGTAGCGAAGATCTGTTCTTTTGGT 2070
|||||||||||||||| ||| ||||||||| || |||| || || |||||||| ||||||
Sbjct 1985 TTCTTGTGTGTGGTCC-AAGGAAGATGAGAGAAGAGGTTGCAAAAATCTGTTCCTTTGGT 2043
Query 2071 TCTGCTGAGAATCTTCACTTTGAATCTATTAGTTTTAGCTGGTGA 2115
|| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2044 TCGGCTGAGAATCTTCAATTTGAATCTATTAGTTTTAGCTGGTGA 2088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79570521805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5