BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01600.1
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918799 jgi|Araly1|918799|scaffold_100080.1 2835 0.0
> Ahg918799 jgi|Araly1|918799|scaffold_100080.1
Length=1705
Score = 2835 bits (1535), Expect = 0.0
Identities = 1654/1711 (97%), Gaps = 9/1711 (1%)
Strand=Plus/Plus
Query 187 AACAATAATAAAAGAGCTACATGGAAATATCCAATGCCATGCTTCTTGTAGCGATCGTAA 246
||||||||||| ||||||||||||||||||||||||| |||||||| |||||| | ||||
Sbjct 1 AACAATAATAAGAGAGCTACATGGAAATATCCAATGCGATGCTTCTCGTAGCGGTGGTAA 60
Query 247 CAGGGTATTGGCTATGGTTCAAGAGGATCTCACGGTGGCTAAAGGGTCCACGTGTCTGGC 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGGGTATTGGCTATGGTTCAAGAGGATCTCACGGTGGCTAAAGGGTCCACGTGTCTGGC 120
Query 307 CTCTGTTGGGTAGTCTTCCTGGTCTGATAGAGCAACGTGACAGGATGCATGAATGGATCA 366
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 CTCTGTTGGGTAGTCTTCCTGGTCTGATAGAGCAACGTGACAGAATGCATGAATGGATCA 180
Query 367 CCGAGAACCTTCGTGCGTGCGGCGGCACTTACCAGACTTGTATCTTTGCCGTGCCTTTCT 426
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGAGAACCTCCGTGCGTGCGGTGGCACTTACCAGACTTGTATCTTTGCCGTGCCTTTCT 240
Query 427 TGGCTAAGAAGCAAGGTCTCGTGACTGTCACGTGTGACCCTAAGAATCTCGAACACATGC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGCTAAGAAGCAAGGTCTCGTGACTGTCACGTGTGACCCTAAGAATCTCGAACACATGC 300
Query 487 TCAAGACCCGGTTCGATAACTACCCTAAAGGTCCTACATGGCAATCCGTCTTCCACGATC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCAAGACCCGGTTCGATAACTACCCTAAAGGTCCTACATGGCAATCCGTCTTCCACGATC 360
Query 547 TCCTGGGTCAAGGTATTTTCAACTCCGACGGTGACACCTGGCTCTTCCAACGCAAAACCG 606
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTCGGCCAAGGTATTTTCAACTCCGACGGTGACACCTGGCTCTTCCAACGCAAAACCG 420
Query 607 CCGCTCTTGAATTCACAACAAGGACGTTGCGGCAAGCCATGGGTAGGTGGGTAAACCGAG 666
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 CCGCTCTTGAATTCACAACAAGGACGTTGCGGCAAGCCATGGGTAGATGGGTAAACCGAG 480
Query 667 GAATTAAGCTCCGGTTCTGTCCGATTCTTGCAACGGCTCAAGACAA-TGCAGAACCAGTT 725
||||||| |||||||||||||| ||||||| ||||||||||| ||| | ||||||| |||
Sbjct 481 GAATTAAACTCCGGTTCTGTCCAATTCTTGAAACGGCTCAAGCCAAAT-CAGAACCGGTT 539
Query 726 GATCTCCAAGACTTAATACTACGGCTCACATTCGACAACATTTGCGGATTGGCGTTCGGT 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATCTCCAAGACTTAATACTACGGCTCACATTCGACAACATTTGCGGATTGGCGTTCGGT 599
Query 786 AAGGACACACGAACCTGCGCACCGGGGCTTCCCGAGAATGGCTTTGCCTCGGCATTCGAT 845
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 AAGGATACACGAACCTGCGCACCGGGGCTTCCCGAGAACGGCTTTGCCTCGGCATTCGAT 659
Query 846 CGAGCCACCGAAGCCTCGCTTCAACGGTTTATCATACCGAAGTTTATGTGGAAGCTGAAG 905
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 CGAGCCACTGAAGCCTCGCTTCAACGGTTTATCATACCGGAGTTTATGTGGAAGCTGAAG 719
Query 906 AAATGGCTTGGGCTCGGTTTAGAAGTAAGCTTGAGCCGAAGCTTAGGAGAAATCGATGAA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAATGGCTTGGGCTCGGTTTAGAAGTAAGCTTGAGCCGAAGCTTAGGAGAAATCGATGAA 779
Query 966 TATCTT-GCTGCTGTTATAAATACACGTAAGCAAGAACTGATGAGTCAGCAAGAAAGTGG 1024
||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 TAT-TTAGCTGCTGTTATAAATACACGTAAGCAAGAATTGATGAGTCAGCAAGAAAGTGG 838
Query 1025 AACCCACCAGAGACACGACGATCTCCTCTCGCGTTTCATGATGAAGAAAACAGAATCTTA 1084
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 839 AACCCACCAGAGACACGACGATCTCCTCTCGCGTTTCATGATGAAGAAAACCGAATCTTA 898
Query 1085 CAGTGACACGTTTCTCCAACACGTGGCGCTTAACTTTATCCTAGCTGGACGTGACACGTC 1144
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 899 CAGTGACACGTTTCTCCAACAGGTGGCGCTTAACTTTATCCTTGCTGGACGTGACACGTC 958
Query 1145 ATCAGTTGCGCTGAGCTGGTTCTTCTGGCTTATCACGATGCATCCAACCGTCGAGGATAA 1204
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATCAGTTGCCCTGAGCTGGTTTTTCTGGCTTATCACGATGCATCCAACCGTCGAGGATAA 1018
Query 1205 AATCGTCCGCGAGATCTGCTCCGTCCTGATCGAGACACGTGGCACTGATGACGTCGCGTC 1264
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1019 AATCGTCCGCGAGATCTGCTCCGTTCTGATCGAGACACGTGGCACTGATGACGTCACGTC 1078
Query 1265 GTGGACTGAGGAGCCTCTAGGGTTCGACGAAATCGACCGTTTGGTTTACCTGAAGGCGGC 1324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTGGACTGAGGAGCCTCTAGGGTTCGACGAAATCGACCGTTTGGTTTACCTGAAGGCGGC 1138
Query 1325 GATCTCGGAGACGCTCAGGCTTTACCCATCGGTGCCGGAAGATTCAAAACACGTCGAGAA 1384
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1139 GATCTCGGAGACGCTCAGGCTTTACCCATCGGTGCCGGAAGATTCGAAACACGTCGAGAA 1198
Query 1385 CGACGACGTTTTACCAGATGGGACCTTCGTTCCGGCGGGATCATCGGTGACGTACTCGAT 1444
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1199 CGACGACGTTTTACCGGACGGGACTTTCGTTCCGGCGGGATCATCGGTGACGTACTCGAT 1258
Query 1445 TTACGCGGCGGGGAGGATGAAGTCGACTTGGGGAGAAGATTGTCTGGAATTCAATCCGGA 1504
||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1259 TTACGCGGCGGGGAGGATGAAATCGACTTGGGGAGAAGATTGTCTGGAATTTAACCCGGA 1318
Query 1505 GAGATGGATTTCTCCGATCGACGGAAAATTTATCAATCACGATCAATATCGGTTCGTGGC 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GAGATGGATTTCTCCGATCGACGGAAAATTTATCAATCACGATCAATATCGGTTCGTGGC 1378
Query 1565 GTTCAATGCTGGACCAAGGATCTGCTTGGGGAAAGATCTGGCGTATCTTCAGATGAAAAC 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTTCAATGCTGGACCAAGGATCTGCTTGGGGAAAGATCTGGCGTATCTTCAGATGAAAAC 1438
Query 1625 AATAGCGGCAGCGGTGCTTCTCCGTCACCGGCTTACGGTGGTTCCGGGACATAAAGTGGA 1684
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AATAGCGGCGGCGGTGCTTCTCCGTCACCGGCTTACGGTGGTTCCGGGACATAAAGTGGA 1498
Query 1685 GCAGAAGATGTCGTTGACGCTATTTATGAAGAACGGACTTCTGGTGAATCTGTATAAGAG 1744
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1499 GCAGAAGATGTCGTTGACGCTATTTATGAAGAACGGACTTCTGGTGAATCTGCACAAGAG 1558
Query 1745 AGATCTCCAAGGAATCATAAAGAGTCTAGTGGTGAAGAAGAGCGACGGTGTC-TCTAACG 1803
|| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 1559 GGACCTCCAAGGGATCATGGAGAGTCTAGTGGTGAAGAAGAGCGACGGTGTCGTC-AACG 1617
Query 1804 GTCAATGTAACGGCGTTATTGGTGAAGGCGTCGCCGTTTACTTAAATACGGGAGTTGCAG 1863
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1618 GTAAATGTAACGGCGTTATTGGTGAAGGCGTCGCCGTTTACTTAAATACGGGAGTTGCGG 1677
Query 1864 TGGTTTAACAAGGCCAATCACGTCCCTGATT 1894
|||||||| ||||||||||||| ||||||
Sbjct 1678 TGGTTTAA---GGCCAATCACGTCTCTGATT 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81398853565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5