BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01630.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470113 jgi|Araly1|470113|fgenesh2_kg.1__67__AT1G01630.1 1552 0.0
> Ahg470113 jgi|Araly1|470113|fgenesh2_kg.1__67__AT1G01630.1
Length=1053
Score = 1552 bits (840), Expect = 0.0
Identities = 959/1015 (94%), Gaps = 14/1015 (1%)
Strand=Plus/Plus
Query 1 ATAAATGAGTAGAATTTTTGTAAGGAAGAGAGTAGTTGGTGAGCGTCGCCATTGAAGGGG 60
|||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 1 ATAAATGAGTAGAA--TTTCTAAGG-A-AGAGTAGTTGGTGAGCGTCGCCATTGAAGGGG 56
Query 61 AAAGCAGCCCAACTTTGCATTGAATGACACTTAAAATCTTTCTCTCAGCAGCTGTCTTCA 120
|||| |||||||||||||||||||||| |||| | |||||| ||||||||||||||| ||
Sbjct 57 AAAGAAGCCCAACTTTGCATTGAATGATACTT-AGATCTTTGTCTCAGCAGCTGTCTCCA 115
Query 121 TTTATGATCGAT-CCTACTTCTTTCTTCTCTCTACCAATTTCAAGATCTGGTCGTCGCTC 179
|||||||||||| || || | | |||||||||||||||||||||||||||||||||||||
Sbjct 116 TTTATGATCGATCCCAACCTGTGTCTTCTCTCTACCAATTTCAAGATCTGGTCGTCGCTC 175
Query 180 ACAGGAGAAACGTAATGGAAAACAAAGAGACCAAGCAAGAACCAG---CAGCAGCAGCTG 236
|| ||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||
Sbjct 176 ACCGGAGAAACGTAATGGAAAAGAAAGAGACCAAGGAAGAACCAGCACCAGCACCAGCTG 235
Query 237 AGCAAAAGACCGTTCCGTTGATCGAAGATGAGATCGAGAGGAGCAAAGTCGGGATCATGA 296
||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 236 AGCAAGAGAATGGTCCGTTGATTGAAGATGAGATCGAGAGGAGCAAAGTCGGGATCATGA 295
Query 297 GAGCTCTCTGCGACCGACAAGATCCTGAAACTAAGGAGGTGGATGATCTGATGATAAGGA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAGCTCTCTGCGACCGACAAGATCCTGAAACTAAGGAGGTGGATGATCTGATGATAAGGA 355
Query 357 GGTTTCTGAGAGCGCGTGACCTGGACATTGAAAAGGCTTCAACGATGTTTCTAAATTACC 416
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 356 GGTTTCTGAGAGCGCGTGACCTCGACATTGAAAAGGCTTCAACGATGTTTCTAAAGTACC 415
Query 417 TGACTTGGAAGAGAAGCATGCTCCCAAAGGGGCACATACCAGAAGCAGAGATTGCAAATG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TGACTTGGAAGAGAAGCATGCTCCCAAAGGGGCACATACCAGAAGCAGAGATTGCAAATG 475
Query 477 ATCTA-TCGCATAACAAGATGTGTATGCAAGGTCATGACAAGATGGGTCGACCTATCGCT 535
| || |||||||||||| |||||||||||||||||||||||||||||||||| || | |
Sbjct 476 A-CTTGTCGCATAACAAGGTGTGTATGCAAGGTCATGACAAGATGGGTCGACCCATTGTT 534
Query 536 GTTGCCATTGGGAACAGACATAACCCTTCCAAAGGCAACCCTGACGAGTTCAAGCGTTTT 595
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 535 GTTGCCATTGGGAACAGACATAACCCTTCCAAAGGTAACCTTGACGAGTTCAAGCGTTTT 594
Query 596 GTTGTCTACACGCTCGAGAAGATTTGTGCTAGAATGCCGAGAGGTCAAGAGAAATTCGTA 655
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 595 TTTGTCTACACGCTCGAGAAGATATGCGCTAGAATGCCGAGAGGTCAAGAGAAATTCGTA 654
Query 656 GCAATTGGAGATCTGCAAGGCTGGGGATATTCTAATTGTGACATCCGTGGCTACCTTGCT 715
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCAATTGGAGATCTTCAAGGCTGGGGATATTCTAATTGTGACATCCGTGGCTACCTTGCT 714
Query 716 GCTCTTTCCACTTTGCAGGATTGTTACCCAGAGAGATTAGGGAAACTCTATATAGTTCAT 775
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 715 GCTCTTTCCACTTTGCAGGATTGTTACCCAGAGAGATTGGGGAAACTATATATAGTTCAT 774
Query 776 GCCCCCTACATTTTCATGACCGCATGGAAGGTCATTTATCCTTTTATCGACGCCAACACC 835
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 775 GCACCCTACATTTTCATGACCGCATGGAAGGTCATTTATCCTTTAATCGACGCCAACACC 834
Query 836 AAGAAAAAGATTGTTTTCGTGGAGAACAAGAAACTCACTCCAACGCTGCTTGAAGACATA 895
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 835 AAGAAAAAGATTGTTTTCGTGGAGAACAAGAAACTCACTCCAACGCTACTCGAAGACATA 894
Query 896 GACGAAAGCCAACTTCCCGACATCTACGGAGGCAAATTGCCACTTGTTCCTATTCAGGAG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GACGAAAGCCAACTTCCCGACATCTACGGAGGCAAATTGCCACTTGTTCCTATTCAGGAG 954
Query 956 ACCTGATTATAGGTCTTACTACGGC--CC-ACCTCTATTTCCAAATTATTACTTA 1007
|||| ||||||||| |||||||||| || ||||||||||| |||||||||||||
Sbjct 955 ACCTAATTATAGGTTTTACTACGGCGGCCCACCTCTATTTCTAAATTATTACTTA 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5