BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01640.1

Length=918
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918795 jgi|Araly1|918795|scaffold_100076.1                        797    0.0  


> Ahg918795 jgi|Araly1|918795|scaffold_100076.1
Length=629

 Score =  797 bits (431),  Expect = 0.0
 Identities = 479/501 (96%), Gaps = 8/501 (2%)
 Strand=Plus/Plus

Query  275  TTCAGGAACATGTTAGATTCTGATGAATGCAAGACCTCCCCCGAGGAATCAATCACTCTC  334
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  129  TTCAGGAACATGTTAGATTCTGATGAATGCAAGACCTCCTCCGAGGAATCAATCACTCTC  188

Query  335  CCTGATTTGTCCCACGACGAACTCAAATCTCTTCTCGAGTTCCTCTACAGCGGTAACCTA  394
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct  189  CCTGATTTGTCCCACGACGAACTCAAATCTCTTCTCGAGTTCCTCTACACCGGTAACTTA  248

Query  395  AAAGCTCCATACAATCAATACCGATCCCTATATCTGGCTGCAGATAAGTACGACATTTCA  454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  249  AAAGCTCCATACAATCAATACCGATCCCTATATCTGGCTGCAGATAAGTACGACATTTCA  308

Query  455  TATCTGCAAGACGTATGCCGTAACCATTTCATCGCATCTCTGAGCTCTAGGAACGTCCTA  514
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  309  TATCTGCAAGACGTATGCCGTAACCATTTCATTGCATCTCTGAGCTCTAGGAACGTCCTA  368

Query  515  GACATCTTAGAGCTCGCCAGTATACCTTGTGACACAATCTTGAAAGACGCGGCTATCAAT  574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  369  GACATCTTAGAGCTCGCCAGTATACCTTGTGACACAATCTTGAAAGACGCGGCTATCAAT  428

Query  575  CATATTGTCAAACATATGGAAGAAGTGGTTGTTCCCATGAAATATGAGACGTTTGTGCAG  634
            |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  429  CATATTGTCAAACACATGGAAGAAGTGGTTGTTCCCATCAAGTATGAGACGTTTGTGCAG  488

Query  635  AGGAACCCGGATCTAAGCGTGGAGATCACTCGGGCTTATCTGAGAGAGACCAAAGCCAAA  694
            |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  489  AGGAACCCGGATCTAAGCGTGGAGATCACTCGCGCTTATCTAAGAGAGACCAAAGCCAAA  548

Query  695  GCCAAAGATCATGGAGCTCCTCTA---AATGGTAATACTCGC-C-CACG-CATCTGGTGA  748
            |||||||||||||||||||||| |   ||||||  |||| || | |||| || |||||||
Sbjct  549  GCCAAAGATCATGGAGCTCCTCCATTCAATGGTTTTACTAGCTCACACGTCAACTGGTGA  608

Query  749  ACAAA--CAGCTTGTGTAAGT  767
            |||||  ||||||||||||||
Sbjct  609  ACAAAAACAGCTTGTGTAAGT  629



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34043764881


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5