BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01660.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333489 jgi|Araly1|333489|fgenesh1_pg.C_scaffold_1000054 2848 0.0
Ahg483732 jgi|Araly1|483732|fgenesh2_kg.4__2792__AT2G45920.1 56.5 6e-07
> Ahg333489 jgi|Araly1|333489|fgenesh1_pg.C_scaffold_1000054
Length=2886
Score = 2848 bits (1542), Expect = 0.0
Identities = 1652/1707 (97%), Gaps = 0/1707 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGAACTCATGGCCATGGGCAATGATGTTGTTCATGTTGCAGTGAAGAGTGATGTC 60
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1180 ATGGCGGAACTCATTGCCATGGGCAATGATGTTGTTCATGTTGCAGTTAAGAGTGATGTC 1239
Query 61 AGAGAGAGCAGATCAACTCTTCTTTGGGCTTTGAGGAACCTCGGGGCTAAGAAAGTCTGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 AGAGAGAGCAGATCAACTCTTCTTTGGGCTTTGAGGAACCTCGGGGCTAAGAAAGTCTGC 1299
Query 121 ATCCTCCATGTTTATCAGCCAAAAACAGCTTCTCCGGCTGCTCGCAAGCTTGAAGAATTG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1300 ATCCTCCATGTTTATCAGCCAAAAACAGCTTCTCCGGCTGCTCGCAAGCTGGAAGAATTG 1359
Query 181 GAGGCTATCATGTACGAGACATTACATGATTATTTTGATTTTTGTCAACAAGAAGGGGTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 GAGGCTATCATGTACGAGACATTACATGATTATTTTGATTTTTGTCAACAAGAAGGGGTG 1419
Query 241 AATGAGGACGATATTTACATATCATGTATAGAGATGAACGATGTGAAGCAGGGGATACTA 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 AATGAGGACGATATTTACGTATCATGTATAGAGATGAACGATGTGAAGCAGGGGATACTA 1479
Query 301 GAACTCATCCATGAGAGCAAAATCAAGAAGCTCGTCATGGGAGCTGCATCAGATCATCAT 360
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1480 GAACTCATCCATGAGGGCAAAATCAAGAAGCTCGTCATGGGAGCTGCATCAGGTCATCAT 1539
Query 361 TATTCAGAGAAGATGTTCGATCTCAAATCAAGAAAGGCAAAGTATGTTTACCAACACGCG 420
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1540 TATTCAGAGAAGATGTTCGATCTCAAATCAAGAAAGGCAAAATATGTTTACCAACATGCG 1599
Query 421 CCCAGCTCGTGCGAGGTTATGTTTATGTGTGATGGACATCTCATCTACACAAAGGAAGCC 480
|| | ||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1600 CCTAACTCCTGCGAGGTTATGTTTATGTGTGACGGACATCTCATCTACAGAAAGGAAGCC 1659
Query 481 AATCTTGAAGACTGTATGGGTGAAACAGAATCCGAAGCTGGACAATCCAAACCGAAGCTC 540
||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1660 AATCTTGAAGACTGTGTGGATGAAACAGAATCCGGAGCTGGACAATCCAAACCGAAGCTC 1719
Query 541 TATTCCTCTGCTTCACCGAAATGCTCTGCAGAATTAGTCTCTGCAATTGTAGCTTACATT 600
| |||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 1720 TTTTCCTCGGCTTCACCGAAATGCTCTGCAGAACTAGTTTCTGCAATTGTAGCGTACATT 1779
Query 601 GACACAAGGAGAGACAGAGATATGTTGGAGCCAAATGCATCAGAGGATCAATCTGAAAGC 660
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1780 GACACAAGGAGAGACAGAGATATGTTAGAGCCAACTGCATCAGAGGATCAATCTGAAAGC 1839
Query 661 GACAGGAATGATCAACTGTATAGACAGCTTAAGCAAGCACTTATGGAAGTTGAGGAATCG 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 GAAAGGAATGATCAACTGTATAGACAGCTTAAGCAAGCACTTATGGAAGTTGAGGAATCG 1899
Query 721 AAAAGGGAAGCTTACGAAGAATGTGTCAGGCGGTTTAAAGCTGAAAATACAGCCGTTGAG 780
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1900 AAAAGAGAAGCTTATGAAGAGTGTGTCAGGCGGTTTAAAGCTGAAAATACAGCCGTTGAG 1959
Query 781 GCCATTCGCAGTGCAAGAGAGTACGAGGCCATGTACAACGAAGAGGCGAAGCTAAGGAAA 840
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1960 GCCATTCGCAGAGCAAGAGAGTACGAGGCCATGTACAATGAAGAGGCGAAGCTAAGGAAA 2019
Query 841 GAAGGTAAAGAAGCATTAGCGAAGCAGAGGAAAATGGTGGAGAAGACTAAACAAGAGAGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2020 GAAGGTAAAGAAGCATTAGCGAAGCAGAGGAAAATGGTGGAGAAGACTAAACAAGAGAGG 2079
Query 901 GACGACGCGCTAATCATCATTCTAAATGGAAGGAAGCTATACAATGAGGAACTGAGACGC 960
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2080 GATGACGCGCTAATCATCATTCTAAATGGAAGAAAGCTATACAATGAGGAACTAAGACGC 2139
Query 961 agagttgaagctgaagagatgttggggaaagagaaagaagaacacgagagaactaagaag 1020
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2140 AGAGTTGAAGCTGAAGAGATGTTGGGAAAAGAGAAAGAAGAACACGAGAAAACTAAGAAG 2199
Query 1021 gagatcgaagaagTGCGAGCCATTGTTCAGGATGGTACTCTGTACAACGAGCAGCTGAGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2200 GAGATCGAAGAAGTGCGAGCCATTGTTCAGGATGGTACTCTGTACAACGAGCAGCTGAGA 2259
Query 1081 CATaggaaagagatggaggaatctatgaagagacaagaggaagagcttgagaagacaaag 1140
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2260 CAAAGGAAGGAGATGGAGGAATCTATGAAGAGACAAGAGGAAGAGCTTGAGAAGACAAAG 2319
Query 1141 aaggagaaggaagaagCGTGCATGATAAGCAAGAACTTGATGCAGCTATATgaagacgag 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2320 AAGGAGAAGGAAGAAGCGTGCATGATAAGCAAGAACTTGATGCAGCTATATGAAGACGAG 2379
Query 1201 gtgaggcagaggaaagaggcagaggagttggtgaagagaagaagagaggagctagagaaa 1260
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 GTGAGGCAGAGGAAAGAAACAGAGGAGTTGGTGAAGAGAAGAAGAGAGGAGCTAGAGAAA 2439
Query 1261 gtgaagaaggagaaggaagaagCTTGCTCTGTAGGACAAAACTTCATGAGGTTGTATGAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2440 GTGAAGAAGGAGAAGGAAGAAGCTTGCTCTGTAGGACAAAACTTCATGAGGTTATATGAA 2499
Query 1321 GAAGAAGCAAGACGTAGAAAAGGAACAGAGGAAGAACTCAGCAAGGTGGCGGCTGAGAAA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2500 GAAGAAGCAAGACGTAGAAAAGGAACAGAGGAAGAACTCAGCAAGGTGGCGGCTGAGAAA 2559
Query 1381 GACGCAGCGAGCTCAGTCTGTTCGGAGATTCTATTACTCCTTCAGAGTTACACTCGTCGC 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2560 GACGCAGCGAGCTCAGTCTGTTCGGAGATTCTATTACTCCTTCAGAGTTACACTCGTCGC 2619
Query 1441 CATGGAACTCCTTCTGGATTCTCCGATGAGGATTCCGTTACACGCCAGCCTCCCTCATAT 1500
||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2620 CATGGGATTCCTTCTGGATTCTCGGATGAGGACTCCGTTACACGCCAGCCTCCCTCATAT 2679
Query 1501 TTCATATGTCCTATCTCACAGGAAGTAATGCGAGAGCCTCGTGTTGCAGCCGATGGTTTC 1560
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 2680 TTCATATGTCCTATCTCACAGGAAGTAATGAGAGAGCCTCGTGTTGCAGCGGATGGTTTT 2739
Query 1561 ACCTATGAAGCTGAATCTTTAAGAGAATGGCTCGATAATGGTCACGAGACCTCACCAATG 1620
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||
Sbjct 2740 ACCTATGAAGCTGAATCCTTAAAAGAATGGCTCGACAATGGTCACGAGACCTCACCAATG 2799
Query 1621 ACAAACCTGAAGCTCGCCCACAACAACCTTGTCCCGAATCACGCCCTTCGTTCCGCGATT 1680
|||||||||| |||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct 2800 ACAAACCTGAGGCTCGCCCACAACAACCTAGTCCCCAACCACGCCCTTCGTTCCGCCATT 2859
Query 1681 CAGGAGTGGCTACAACGAAACTCTTGA 1707
||||||||||| |||||||||||||||
Sbjct 2860 CAGGAGTGGCTCCAACGAAACTCTTGA 2886
> Ahg483732 jgi|Araly1|483732|fgenesh2_kg.4__2792__AT2G45920.1
Length=1678
Score = 56.5 bits (30), Expect = 6e-07
Identities = 39/43 (91%), Gaps = 2/43 (5%)
Strand=Plus/Plus
Query 325 AAGAAGCTCGTCATGGGAGCTGCATCAGATCAT-CATTATTCA 366
||||||||||||||||||||||||||||| || || ||||||
Sbjct 580 AAGAAGCTCGTCATGGGAGCTGCATCAGA-CAGACACTATTCA 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5