BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01690.1
Length=1692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909803 jgi|Araly1|909803|Al_scaffold_0001_57 2026 0.0
> Ahg909803 jgi|Araly1|909803|Al_scaffold_0001_57
Length=2568
Score = 2026 bits (1097), Expect = 0.0
Identities = 1260/1335 (94%), Gaps = 25/1335 (2%)
Strand=Plus/Plus
Query 108 ATGAATATTA-ACAAAGCCTGCGATCTGAAATCTATTTCTGTCTTTCCTCCTAATTT--- 163
||||||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAATA-TACACAAAGCCTGCGATCTGAAATCTATTTCTGCCTTTCCTCCTAATTTAAG 59
Query 164 AAGGAGATCAGCAGAA-C-C-ACAAGCATCTCAGCAGCTTCGATCTCAACAGTCACAGCA 220
|||||||||||| ||| | | |||||||||||||||| ||||||||||||||||||||||
Sbjct 60 AAGGAGATCAGCTGAACCACAACAAGCATCTCAGCAGTTTCGATCTCAACAGTCACAGCA 119
Query 221 GTCCT-TCTCTCAGGGACCTTCTTCGTCTCAGCGTGGTTGTGGTGGTTTTTCTCAGATGA 279
||||| | ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 120 GTCCTAT-TCTCAGGGACCTTCTTCGTCTCAGCGT-G--GTGGTGGTTTTTCTCAGATGA 175
Query 280 CTCAGAGTTCTATCGACGAACTCCTCATTAACGATCAGAGATTTAGTTCTCAGGAAAGAG 339
||||||||||||| || ||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct 176 CTCAGAGTTCTATTGATGAACTCCCCATTAACGATCTGAGGTTTAGTTCTCAGGAAAGAG 235
Query 340 ATCTCTCTTTGAAGAAGGTTAGTAGTTGCTTACCTCCAATCAATCATAAACGAGAAGATA 399
||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 236 ATCCCTCTTTGAAGAAGG-T--TAGTTGCTTACCCCCAATCAATCATAAACGAGAAGATA 292
Query 400 GTCAGTTGGTCGCTTCTAGATCTTCAAGTGGTCTTTCGAGAAGATGGAGTTCTGCTTCAA 459
||||||||||| | ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 293 GTCAGTTGGTCACATCTAGATCTTCCAGCGGTCTCACGAGAAGATGGAGTTCTGCTTCAC 352
Query 460 TTGGAGAGTCT-AAGT--CTCAGATCAGTGAAGAGCTTGAGCAACGGTTTGGGATGATGG 516
||||||||||| || | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 353 TTGGAGAGTCTAAATTAGCTCAGATCAGTGAAGAGCTTGAGCAACGATTTGGGATGATGG 412
Query 517 AGACTTCTTTGAGCAGGTTTGGAATGATGTTGGATTCAATTCAGAGTGACATCATGCAAG 576
| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 413 AAACTTCTTTGAGCAGGTTTGCAATGATGTTGGATTCCATTCAGAGTGACATCATGCAAG 472
Query 577 CCAATC-GAGGAACTAAAGAAGTATTTCTTGAAACTGAACGCATACAGCAAAAGTTGACT 635
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 473 CCAA-CAGAGGAACTAAAGAAGTATTTCTTGAAACTGAACGCATACAGCAAAAGTTGATT 531
Query 636 CTCCAAGACACTTCACTTCAGCAGCTGAGAAAGGAACAAGCCGATTCTAAAGCTAGTCTT 695
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 532 CTCCAAGACACTTCACTTCAGCAGCTGATAAAGGAACAAGCCGATTCTAAAGCTAGTCTT 591
Query 696 GATGGAGGTGTTAAATTTATATTGGAGGAATTCAGCAAAGATCCCAATCAGGAGAAGCTA 755
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 592 GATGGAGGTGTTAAATCTATATTGGAGGAATTCAGCAAAGATCCTAATCAGGAGAAGCTA 651
Query 756 CAGAAAATCTTACAGATGCTAACAACTATCCCAGAGCAAGTAGAAACCGCTCTGCAGAAA 815
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CAGAAAATCTTACTGATGCTAACAACTATCCCAGAGCAAGTAGAAACCGCTCTGCAGAAA 711
Query 816 ATACAAAGGGAAATCTGTCACACGTTCACCAGAGAGATTCAGGTCTTGGCTAGCTTGAGG 875
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 712 ATACAAAGGGAAATCTGTCACACGTTCACCAGAGAGATTCAGGTCTGGGCTAGCTTGAAG 771
Query 876 ACGCCTGAACCAAGGGTTCGGGTTCCAACAGCACCACAAGTGAAGGCTAAGGAAAACCTG 935
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ACGCCTGAACCAAGGGTTCAGGTTCCAACAGCACCACAAGTGAAGGCTAAGGAAAACCTG 831
Query 936 CCTGAGCAGCGTGGTCAAGCGGCCAAGGTTTTGACTAGCTTGAAGATGCCTGAGCCAAGA 995
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 832 CCTGAGCAGCGTGGTCAAGCAGCCAAGGTTTTGACTAGCTTGAAGATGCCTGAGCCAAGA 891
Query 996 GTTCAGGTTCCAGCAGCACCACAAGCTAAGGAAAAC-TTTCCTGAGCAGCGCGGTCCAGT 1054
||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |||
Sbjct 892 GTTCAGGTTCCAGCAGCACCACAAGCTAAGG-AAACATTGCCTGAGCAGCGCGGTACAGC 950
Query 1055 AGCCAAGAGCAATTCCTTTTGTAATACTACACTGAAAACCAAACAACCACAATTTCCGAG 1114
|||||||||||||||| |||||||||||| ||||||||| |||||||| || |||| ||
Sbjct 951 AGCCAAGAGCAATTCCCTTTGTAATACTATACTGAAAACTAAACAACCGCAGCTTCCAAG 1010
Query 1115 AAATCCAAATGA-CGCCTCAGCCAGAGCTGTAAAACCATATTTATCCCCAAAGATACAAG 1173
||| |||||| | ||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1011 AAAACCAAAT-AGCGCATCAGCCAGAGCTGTGAAACCATATTTGTCCCCAAAGATACAAG 1069
Query 1174 TGGGATGTTGGAAGACGGTGAAACCAGAAAAAAGCAATTTCAAGAAAAGAGCAACAAGGA 1233
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1070 TGGGATGTTGGAAGACTGTGAAACCAGAAAAAAGCAATTTCAAGAAAAGAGCAACAAGAA 1129
Query 1234 AGCCAGTGAAATCCGAAAGCACTCGTACGCAGTTTGAGCAATGCAGTGTTGTGATAGACT 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AGCCAGTGAAATCCGAAAGCACTCGTACGCAGTTTGAGCAATGCAGTGTTGTGATAGACT 1189
Query 1294 CCGATGAAGAAGATATTGATGGAGGTTTTTCATGCCTGATCAACGAGAACACCAGAGGAA 1353
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1190 CCGATGAAGAAGATATTGATGGAGGTTTTTCATGCCTGATCAACGAGAACACCAAAGGAG 1249
Query 1354 CTAACTTCGAATGGGACGCAGAGAAGGAAACTGAAAGGATTCTGAGGACAGCGAGGAGGA 1413
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1250 CTAACTTCGAATGGGACGCAGCGAAGGAAACTGAAAGGATTCTGAGGACAGCGAGGAGGA 1309
Query 1414 CAAAGAGGAAGTTCG 1428
|||||||||||||||
Sbjct 1310 CAAAGAGGAAGTTCG 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63458348170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5