BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01725.1
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470102 jgi|Araly1|470102|fgenesh2_kg.1__56__AT1G01725.1 348 2e-95
> Ahg470102 jgi|Araly1|470102|fgenesh2_kg.1__56__AT1G01725.1
Length=369
Score = 348 bits (188), Expect = 2e-95
Identities = 244/269 (91%), Gaps = 12/269 (4%)
Strand=Plus/Plus
Query 6 CACCGGAATTGTTCTTTCTGGGAAC-G-AA-A-ACATCGATGAATCCCCAAATTGAAAAG 61
||||||||||||||||||||||||| | || | | | |||||||||||||||| ||||||
Sbjct 1 CACCGGAATTGTTCTTTCTGGGAACAGCAAGAGAGAGCGATGAATCCCCAAATAGAAAAG 60
Query 62 GTGGTGAAGGTAACCAGTGTGGTGGCGACTGCTGTTGTATCGTACTTCCTCTTAACCGCT 121
||||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 GTGGTGAGGGTAACGAGTGTGGTGGCCACTGCTGTTGTATCCTACTTCCTCTTAACCGCT 120
Query 122 GATTACGGTCCAGAGCCCAACGCTCTTGATCCTATCAGACAGAGGATACTTTCAGCGCAA 181
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 GATTACGGTCCCGAGCCCAACGCTCTCGATCCTATCAGACAGAGGATACTTTCAGCGCAG 180
Query 182 GATTCCGTGAAAGAGTTCATCTTTCCATCAAAGAAGTCCGACAAGTGACAATGGACAGTA 241
||||||||||||||||||||||||||||||||||| |||||||||| ||| | | |
Sbjct 181 GATTCCGTGAAAGAGTTCATCTTTCCATCAAAGAAATCCGACAAGT--CAA-GT---G-A 233
Query 242 ACATGTAGCTCAACATCAGACTTCATCTT 270
||||||||||||||||| ||||||||||
Sbjct 234 -CATGTAGCTCAACATCATACTTCATCTT 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16368747681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5