BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01730.1
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470101 jgi|Araly1|470101|fgenesh2_kg.1__55__AT1G01730.1 1000 0.0
> Ahg470101 jgi|Araly1|470101|fgenesh2_kg.1__55__AT1G01730.1
Length=837
Score = 1000 bits (541), Expect = 0.0
Identities = 688/752 (91%), Gaps = 38/752 (5%)
Strand=Plus/Plus
Query 3 TATGGCGATCTCTTTCGGCGGTTG-AAAACCTTTG-AAAATTGAAAATGGAGAAATCGAC 60
||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1 TATGGAGATCTCTTTCGGCGGTTGAAAAACCTTTGAAAAATTGAAAATGGAGAAATCGAC 60
Query 61 CTCTCCGGCGACTCGAGTCACCGAACCTCCTCCTGCTGCTACTTCATCTCTTCCAGCACA 120
||| |||||||||| |||||||||| |||||| | ||||||||||||||||||||||
Sbjct 61 CTCGCCGGCGACTCAAGTCACCGAA---CCTCCT-C--CTACTTCATCTCTTCCAGCACA 114
Query 121 AGCTCCTCCGCTTCCTACATCTGCAGATCAGAGATCAGCTGAGTTACCTTCGCCTGCTCA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 115 AGCTCCTCCGCTTCCTACATCTGCAGATCAGAGATCAGCTGAGTTACCTT---C-GC-C- 168
Query 181 GCCAGCTCAGATGACTGCGCCTCCGTCGACAGTTACCACAGATCCGTCGTCCAGGGGAAG 240
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 169 G---GCTCAGATGACTGCGCCTCCGTCGACAGTTACCACAGATCCGTGGTCCAGGGGAAG 225
Query 241 AAAGCGAGCGCTGGAAGCGAATCTTCAGATCGAGAGCTCCAACTACTACAAGATGCGTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 AAAGCGAGCGCTGGAAGCGAATCTTCAGATCGAGAGCTCCAACTACTACAAGATGCGTCT 285
Query 301 CCTTGTCAAAGATCTTCGCCCTCACGTTCTCGAGGTTTTACGAACTCCAGACTTGAGGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 286 CCTTGTCAAAGATCTTCGCCCTCACGTTCTCGAGGTTTTACGAACTCCAGATTTCAGCAA 345
Query 361 CTCTAAGGCAGTTATCGAGATTCAAGAGAAGATGAAGCTTATGCTTCAACTGTACGAAGA 420
||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 346 CTCTAAGGCAGCTATCGAGATTCAAGAGAAGATGAATCTTATGCTTCAACTGTACCAAGA 405
Query 421 GATGATTGGAGAGTCTCCCAAACGTGAGAAAACAGCTAAGAGCGACTCTTTATCCAACGG 480
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 406 GATGATCGGAGAATCTCCCAAACGTGAGAAAACAGCTAAGAGCGAGTCTTTATCCAACGG 465
Query 481 AAAGGCGactactactactactactactactaGTGTACTGAGATCATCTGAAACTGAGA- 539
|||||| ||||||||||| ||||| |||||||||||||||| ||
Sbjct 466 AAAGGC---TACTACTACTA------------GTGTATTGAGATCATCTGAAACA-AGCT 509
Query 540 A-GC-ACAGCTCTGATGGAGATGGCGACAAGGTGGTTGGAGGGTCGGCATTTGGCTGGAA 597
| | | | ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 510 ATGTGA-AT-TCTGATGGAGATGGCGACAAGGTGGTTGGAGGGTCTGCATTTGGCTGGAA 567
Query 598 CTTCATAACCTCTGGAGGGCCAGGCACTGAACCTGTTTATTCTGGAATGTCAAAGGAAGA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 CTTCATAACCTCTGGAGGGCCAGGCACTGAACCTGTTTATTCTGGAATGTCAAAGGAAGA 627
Query 658 ATACAGAAGCTCTCACCCAATTATGCAAGTGGAGGCAGAGCTTGAGTTGCCCAACACATT 717
|||||||||||||||||||||||| ||||||||||||| | ||||||||| | |||||||
Sbjct 628 ATACAGAAGCTCTCACCCAATTATCCAAGTGGAGGCAGCGGTTGAGTTGCACGACACATT 687
Query 718 CTAAGCTTTGTTAGTGGTGTTTGTATAATATT 749
||||||||||||||| | ||||||||||||||
Sbjct 688 CTAAGCTTTGTTAGTCGAGTTTGTATAATATT 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5