BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01750.1
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918780 jgi|Araly1|918780|scaffold_100061.1 950 0.0
Ahg490501 jgi|Araly1|490501|fgenesh2_kg.6__3635__AT4G00680.1 508 2e-143
> Ahg918780 jgi|Araly1|918780|scaffold_100061.1
Length=553
Score = 950 bits (514), Expect = 0.0
Identities = 540/553 (98%), Gaps = 0/553 (0%)
Strand=Plus/Plus
Query 140 GCCCCAATTTCAAGCAGAGAACAATGGCTAATTCAGCGTCTGGGATGCACGTTAGCGATG 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCCCAATTTCAAGCAGAGAACAATGGCTAATTCAGCGTCTGGGATGCACGTTAGCGATG 60
Query 200 AGTGCAAGCTCAAGTTCTTGGAGTTAAAAGCAAAGAGGAACTATAGGTTCATTGTGTTCA 259
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGCAAGCTCAAGTTCTTGGAGTTGAAAGCAAAGAGGAACTATAGGTTCATTGTGTTCA 120
Query 260 AAATTGATGAGAAGGCTCAGCAAGTTATGATAGACAAGCTTGGGAATCCAGAAGAAACTT 319
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 AAATTGATGAGAAGGCTCAGCAAGTTATGATTGACAAGCTTGGGAATCCAGAAGAAACTT 180
Query 320 ACGAAGATTTCACCAGATCTATTCCCGAGGATGAGTGCCGATATGCTGTCTATGACTATG 379
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 181 ACGACGATTTCACCAGATCTATTCCCGAGGACGAGTGCCGATATGCTGTCTATGACTTTG 240
Query 380 ATTTCACCACCCCTGAGAACTGCCAGAAGAGCAAAATCTTTTTCATCGCATGGTCACCTG 439
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTTCACCACTCCTGAGAACTGCCAGAAGAGCAAAATCTTTTTCATCGCATGGTCACCTG 300
Query 440 ATACATCAAGAGTGAGGAGTAAGATGTTGTATGCAAGCTCAAAGGACAGGTTCAAGAGGG 499
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATACATCAAGAGTGAGAAGTAAGATGTTGTATGCAAGCTCAAAGGACAGGTTCAAGAGGG 360
Query 500 AATTGGATGGGATTCAAGTTGAATTGCAAGCAACAGATCCTAGCGAGATGAGCCTCGACA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATTGGATGGGATTCAAGTTGAATTGCAAGCAACAGATCCTAGCGAGATGAGCCTCGACA 420
Query 560 TCATCAAGGGACGAGTCAATCTCTGAATGGAACTTACCGCATCTTAATTCGTTTCAGTCA 619
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 TCATCAAGGGACGAGTCAATCTCTGAATGGGACTTACCGCATCTTAATTCGTTTCAGTCA 480
Query 620 AAATTCATATTTTCTGCTTTCGTTTTCTTGGGTATTTTTCATTTAACTTCTTTACTATTT 679
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 481 AAATTCATATTTTCTGCTTTCGTTTTCTTGGGTATTTTTCGTTTCACTTCTTTGCTATTT 540
Query 680 GTATCTTCTGTGA 692
|||| ||||||||
Sbjct 541 GTATTTTCTGTGA 553
> Ahg490501 jgi|Araly1|490501|fgenesh2_kg.6__3635__AT4G00680.1
Length=615
Score = 508 bits (275), Expect = 2e-143
Identities = 383/435 (88%), Gaps = 7/435 (2%)
Strand=Plus/Plus
Query 155 AGAGAACAATGGCTAATTCAGCGTCTGGGATGCACGTTAGCGATGAGTGCAAGCTCAAGT 214
||| ||| |||||||||||||||||||||||||| || | ||||| |||||||| ||||
Sbjct 81 AGAAAAC-ATGGCTAATTCAGCGTCTGGGATGCATGTGAATGATGAATGCAAGCTTAAGT 139
Query 215 TCTTGGAGTTAAAAGCAAAGAGGAAC-TATAGGTTCATTGTGTTCAAAATTGATGAGAAG 273
|||||||||| |||||||||| |||| || ||||| ||||||||||||||||||||||||
Sbjct 140 TCTTGGAGTTGAAAGCAAAGA-GAACTTACAGGTTTATTGTGTTCAAAATTGATGAGAAG 198
Query 274 GCTCAGCAAGTT-ATGATAGACAAGCTTGGGAATCCAGAAGAAACTTACGAAGATTTCAC 332
||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 199 GCTCAGCAAGTCCAA-ATAGAAAAGCTTGGGAATCCAGAAGAAACTTACGACGATTTTAC 257
Query 333 CAGATCTATTCCC-GAGGATGAGTGCCGATATGCTGTCTATGACTATGATTTCACCACCC 391
||| |||| ||| || || || || ||||| || |||||||| | ||||||||||||
Sbjct 258 CAGCGCTAT-CCCTGATGACGAATGTCGATACGCAGTCTATGATTTTGATTTCACCACAG 316
Query 392 CTGAGAACTGCCAGAAGAGCAAAATCTTTTTCATCGCATGGTCACCTGATACATCAAGAG 451
|| || || ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 317 AGGACAATTGTCAGAAGAGCAAGATCTTTTTCATCGCGTGGTCACCTGATACATCAAGAG 376
Query 452 TGAGGAGTAAGATGTTGTATGCAAGCTCAAAGGACAGGTTCAAGAGGGAATTGGATGGGA 511
| |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
Sbjct 377 TTCGGAGTAAGATGTTGTATGCAAGCTCAAAAGACAGGTTCAAGAGAGAAATGGATGGAA 436
Query 512 TTCAAGTTGAATTGCAAGCAACAGATCCTAGCGAGATGAGCCTCGACATCATCAAGGGAC 571
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||
Sbjct 437 TTCAAGTTGAATTGCAAGCAACTGATCCAAGCGAGATGAGCCTTGACATCATCAAAGGAC 496
Query 572 GAGTCAATCTCTGAA 586
|| ||||||||||||
Sbjct 497 GACTCAATCTCTGAA 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28363450248
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5