BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01760.1
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909796 jgi|Araly1|909796|Al_scaffold_0001_50 1884 0.0
> Ahg909796 jgi|Araly1|909796|Al_scaffold_0001_50
Length=1200
Score = 1884 bits (1020), Expect = 0.0
Identities = 1110/1155 (96%), Gaps = 0/1155 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGATTGGGGAAAGACAGTATCAGAGAAGGTTATTTCGGCTTACATGTCTCTC 60
|||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAGGAGGATTGGGGAGAGAGGGTATCAGAGAAGGTTGTTTCGGCTTACATGTCTCTC 60
Query 61 CCGAAGAAGGGAAAACCTCAGGGACGTGAAGTCACCGTCCTCTCCGCTTTCCTCGTCTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CCGAAGAAGGGAAAACCTCAGGGACGTGAAGTCACCGTCCTCTCCGCTTTCCTTGTCTCT 120
Query 121 TCTCCTTCCCAAGACCCGAAAGTGATAGCGTTAGGGACGGGGACCAAGTGCGTTAGTGGG 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TCTCCTTCCCAAGACTTGAAAGTGATAGCGTTAGGGACGGGGACCAAGTGCGTTAGTCGG 180
Query 181 TCGCTGCTGAGTCCCCGTGGGGACATTGTGAACGATTCTCATGCCGAAGTTGTCGCCAGA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCGCTGCTGAGTCCCCGTGGGGACATTGTTAACGATTCTCATGCCGAAGTTGTCGCCAGA 240
Query 241 AGAGCTCTCATCAGGTTCTTCTATTCCGAGATTCAGCGGATGCAATTGACTTCAGGTAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 AGAGCTCTCATCAGGTTCTTCTATTCCGAGATTCAGCGGATGCAATTGACTTCAGATAAG 300
Query 301 AGTAATGAAGCCAAGCGTCAGAGAATTGATAGCGAAACAAGCTCAATACTAGAGTCAGCA 360
|||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 301 AGTAGTGAAGCCAAGCGTCAGAGACTTGATTGCGAAACAAGCTCAGTACTAGAGTCAGCA 360
Query 361 GATTCAAGCTGTCCTGGAGAAGTCAAATATAAGCTCAAATCTGGGTGCCTCTTGCATTTG 420
|||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||| ||
Sbjct 361 GATTCAAGCTGTCCTGGACAAGTGAAATATAAGCTCAAATCTGGCTGCCACTTGCATATG 420
Query 421 TACATTTCTCAATTGCCATGTGGTTATGCTTCTACTAGTTCACCCTTGTATGCCCTGAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TACATTTCTCAATTGCCATGTGGTTATGCTTCTACTAGTTCACCCTTGTATGCCCTGAAA 480
Query 481 AAGATTCCATCAACACAAGTAGATGACTCATTGTTAGTTCAAGCTTCTGATATTTGCTCG 540
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||
Sbjct 481 AAGATTCCATCAACACAAGTAGACGACTCATTTTTAGTTCAAGCTTCTGACATTGGCTCG 540
Query 541 TCTCGGCATTCTGATGTTCCAGAGATAGGTAGTAATAGCAACAAAGGTAATGGCTCACAA 600
||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 541 TCTCGGCATTCTGATGTTCCACAGATAGGTAGTAATAGCCACACAGGTAATGGCTCACAA 600
Query 601 GTAGCAGATATGGTGCAAAGAAAGCCTGGTCGCGGTGAAACAACACTCTCTGTTAGCTGT 660
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 601 GTAGCAGATATGGTGCAAAGAAAGCCTGGTCGTGGTGAAACGACACTCTCTGTTAGCTGT 660
Query 661 TCGGATAAGATAGCTCGATGGAATGTTCTTGGAGTTCAAGGGGCATTGCTTTACCAAGTC 720
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 TCAGATAAGATAGCTCGATGGAATGTTCTTGGAGTTCAAGGGGCATTGCTTTGCCAAGTC 720
Query 721 CTCCAGCCTGTGTATATTTCTACCATCACCGTTGGACAATCTCTGCACAGTCCTGACAAT 780
||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 721 CTCCAGCCTGTTTATATCTCTACCATCACCGTTGGACAATCTCTGCACATTCCTGGCAAT 780
Query 781 TTTTCTTTAGCTGATCACTTGCGAAGATCTTTGTATGAGAGGATCCTCCCATTATCGGAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 TTTTCTTTAGCTGATCACTTGCGAAGATCTTTGTATGAGAGGATCCTCCCACTATCGGAT 840
Query 841 GAACTTCTGACTTCCTTCCGTTTGAACAAGCCACTGTTTTTTGTAGCTCCAGTACCACCA 900
|| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct 841 GACCTTCTGACTTCCTTCCGGTTGAAAAAGCCACTGTTTTTTGTAGCTCCAGTAACACCA 900
Query 901 TCAGAGTTTCAGCATTCAGAAACTGCGCAAGCTACTTTAACATGCGGATATTCCTTGTGT 960
||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 901 TCAGAATTTCAGCATTCAGAAACTGCTCAAGCTACCTTAACATGCGGGTATTCCTTGTGT 960
Query 961 TGGAACTATTCTGGCTTACACGAAGTTATTCTTGGAACAACCGGTAGAAAGCAAGGCACA 1020
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 TGGAACTATTCTGGCTTACACGAAGTTATTCTTGGAACAACAGGTAGAAAGCAAGGCACA 1020
Query 1021 TCAGCTAAAGGAGCTCTGTATCCGTCTACTCAATCATCTATATGCAAACAGCGGTTACTG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCAGCTAAAGGAGCTCTGTATCCGTCTACTCAATCATCTATATGCAAACAGCGGTTACTG 1080
Query 1081 GAGCTATTCTTGAAAGAAACTCATGGACACAAAAGGGAATCTTCCAAGTCaaaaaaaTCG 1140
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1081 GAGCTATTCTTGAAAGAAACTCATGGACACGAAAGGGAATCTTCCAAGTCAAAAAAATCG 1140
Query 1141 TACCGAGAACTGAAG 1155
|||||||||||||||
Sbjct 1141 TACCGAGAACTGAAG 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49064194179
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5