BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01790.1
Length=3892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311263 jgi|Araly1|311263|fgenesh1_pm.C_scaffold_1000043 5251 0.0
Ahg490505 jgi|Araly1|490505|fgenesh2_kg.6__3639__AT4G00630.1 2278 0.0
> Ahg311263 jgi|Araly1|311263|fgenesh1_pm.C_scaffold_1000043
Length=3516
Score = 5251 bits (2843), Expect = 0.0
Identities = 3138/3280 (96%), Gaps = 21/3280 (1%)
Strand=Plus/Plus
Query 403 TGCCGATAGTAATGATCATCGGATCGGGGAATCTTCCGAAAGTAGTGATGAAACTGAAGC 462
|||||||| || | || |||| ||| |||||||||||| |||||||||||||| ||| ||
Sbjct 243 TGCCGATACTAGTAATGATCGAATCAGGGAATCTTCCGGAAGTAGTGATGAAAGTGATGC 302
Query 463 TACAGATTT-------G--AAAGATGCGAGAGTGGAAAACGACACTGATAGTTTGGAGGA 513
||||||||| | ||||||| ||||| |||||||| |||||||||||||||||
Sbjct 303 TACAGATTTGAAAGAAGAAAAAGATGTTAGAGTCGAAAACGAAACTGATAGTTTGGAGGA 362
Query 514 ACTCAAGGAGTTACTACACAAGGCAATTAAAGAATTGGAAGTTGCTAGGCTCAATAGTAC 573
||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||
Sbjct 363 ACTCAAGGAGTTACTTCAAAAGGCAATTAAAGAGTTGGAAGTTGCTAGACTCAATAGTAC 422
Query 574 CATGTTTGAGGAAAAGGCTCAGAGAATCTCAGAAAGAGCCATAGCACTCAAGGATGAAGC 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CATGTTTGAGGAAAAGGCTCAGAGAATCTCAGAAAGAGCCATAGCACTCAAGGATGAAGC 482
Query 634 TGCTACTGCTTGGCTTGACGTAAACAAAACCCTTGATGTCATTCGAGATACTGTTTATGA 693
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 483 TGCTACTGCTTGGCATGACGTAAACAAAACCCTTGATGTCATTCGAGATACTGTTGATGA 542
Query 694 GGAGGCTCTTGCTAAAGAAGCTGTTCAAACGGCTACTATGGCCCTGTCTCTGGCTGAAGC 753
||| |||||||||||||||||||||||| |||||||||||| | ||||| ||||||||
Sbjct 543 GGAATCTCTTGCTAAAGAAGCTGTTCAAAAGGCTACTATGGCGTTATCTCTTGCTGAAGC 602
Query 754 TAGGCTTCAGGTTATAGTGGAATCACTTGAAGCTGGTGCAGGGAATGATATTCCACATGT 813
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TAGGCTCCAGGTTATAGTGGAATCACTTGAAGCTGGTGCAGGGAATGATATTCCACATGT 662
Query 814 GTCTGAAGAGACTGAGGAAACA-ATAGATGTTAATGATAAAGAAGAAGCTCTTTTAGCTG 872
|||||||||||||||| ||||| || ||||| || |||||||||||||||||||||||||
Sbjct 663 GTCTGAAGAGACTGAGAAAACAGAT-GATGTGAAAGATAAAGAAGAAGCTCTTTTAGCTG 721
Query 873 CCAAGGATGATATTAAAGAATGCCAAGTT-AATTTAGATAA-TTGTGAGTCCCAACTGAG 930
|||||||||||||||||||||| ||| || |||||||| || ||||||||||||||| ||
Sbjct 722 CCAAGGATGATATTAAAGAATGTCAA-TTGAATTTAGA-AATTTGTGAGTCCCAACTAAG 779
Query 931 -TGCTTTGCTGAGCAAAAAAGACGAGCTGCAAAAGGAAGTGGACAAGTTGAATGAGTTCG 989
|| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 TTG-TTTGCAGAGCAAAAAAGACGAGCTGCAGAAGGAAGTGGACAAGTTGAATGAGTTCG 838
Query 990 CTGAGACAATACAGATCAGTTCGTTGAAAGCCGAGGAGGATGTTACCAATATTATGAAAT 1049
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 839 CTGAGACAATACAGATCAGTGCGTTGAAAGCCGAGGAGGATGTCGCCAATATTATGAAAT 898
Query 1050 TGGCTGAACAAGCTGTAGCATTTGAGCTTGAGGCTACTCAACGCGTTAATGATGCAGAGA 1109
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 TGGCTGAACAAGCTGTAGCATTTGAGCTTGAGGCTACTCAACGTGTTAATGATGCAGAGA 958
Query 1110 TTGCTTTACAGAGAGCAGAGAAGTCTCTCTCCATTTCTCAGACCCCAGAGGAAACTCAGG 1169
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTGCTTTGCAGAGAGCTGAGAAGTCTCTCTCCATTTCTCAGACCCCAGAGGAAACTCAGG 1018
Query 1170 GCCAACTCTCGGATGAAGAAACTTCTC-AGGAGGATGCGATGGTACTTTCAGGTAACGTT 1228
||||||||||||||||||||| || | | ||||||| | ||||||||||||||||||||
Sbjct 1019 GCCAACTCTCGGATGAAGAAA-GTCACGACGAGGATGAGGTGGTACTTTCAGGTAACGTT 1077
Query 1229 GAAGATGTTACCCATCAGGTTGAAAAAGAATCACCTAAAGATGGAGATCTACCAGTGGTA 1288
|||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1078 GAAGATGTTAGCCATCAGGTTGAAAAAGAATCACCTATTGATGGAGATCTATCAGTGGTA 1137
Query 1289 CAGATCACAGCTGAACTTGTGCCTGATATAGTTGGTCAGAGGAATAAAAAACTAACTCAG 1348
|||| |||| |||| || ||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 1138 CAGAACACATCTGATCTAGTGCCTGATTTAGTTGGTCAGAAGAATCAAAAACTAACTCAG 1197
Query 1349 CCTTATGAGTCAAGCGATCATGAGAATGGAAAGCCAAGTGTAGAGTCTTCTAAAGTGGTT 1408
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CCTTATGAGCCAAGCGATAATGAGAATGGAAAGCCAAGTGTAGAGTCTTCTAAAGTGGTT 1257
Query 1409 GAAGCAGATTCTGAAAAGCCAAAGATTAATGTTCAGACaaaaaaaCAGGAAACTCAAAAA 1468
|||||||| | ||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 1258 GAAGCAGAATGTGAAAAGCCAAAGATTAATGTTCAGACGAAAAAACAGGAAACACAGAAA 1317
Query 1469 GATCTGCCAAAGGAGGGTTCCTCTCTTAATTCTCCCAAGGCATCGTTTAATAAATCCTCC 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GATCTGCCAAAGGAGGGTTCCTCTCTTAATTCTCCCAAGGCATCGTTTAATAAATCCTCC 1377
Query 1529 CGTTTCTTTTCTGCATCTTTCTTCTCTTCTAATCCAGATGGGACCGCGACAGTGTTTGGT 1588
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1378 CGTTTCTTTTCTGCATCTTTCTTCTCTTCCAATCCAGATGGGACCGCGACAGTGTTTGCT 1437
Query 1589 AGTCTGGTTGGTTCTGTCAAACAGCAATGGCCCAAACTAGTTCTTGGGCTTGCTCTTCTT 1648
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 1438 AGTCTGGTTGGTTCTGTCAAACAGCAATGGCCCAAGCTAGTACTTGGGTTTGCTCTTCTT 1497
Query 1649 GGAGCAGGACTGACATTATACTCCAATGGAGTAGGGGGGAACAACCAGTTGCTTCAACAG 1708
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1498 GGAGCAGGACTGACATTATACTCCAATGGAGTAGGGGGGAACAACCAGCTGCTTCAACAG 1557
Query 1709 CCAGATGTTACCAGCACTAGTACAGAAGATGTCTCTTCAAGTACGAAGCCACTGATCCGG 1768
|||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 1558 CCAGATGTTACCAGCACTAGTACAGAAGATATCTCTTCCAGTACGAAGCCATTGATCCGG 1617
Query 1769 CAAGTGCAGAAACTTCCCAAGAGAATTAAGAAACTACTTGAGATGATCCCTCACCAGGAG 1828
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1618 CAAGTGCAGAAACTTCCCAAGAGATTTAAGAAACTACTTGAGATGCTCCCTCACCAGGAG 1677
Query 1829 GTCAATGAGGAAGAAGCTTCCCTCTTTGACTTTTTGTGGTTACTGCTAGCAAGCGTCATA 1888
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1678 GTCAATGAGGAAGAAGCTTCCCTTTTTGATTTTTTGTGGTTACTGCTAGCAAGCGTTATA 1737
Query 1889 TTTGTGCCTCTATTTCAGAAAATTCCTGGAGGCAGCCCTGTTCTTGGGTATTTGGCAGCT 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TTTGTGCCTCTATTTCAGAAAATTCCTGGAGGCAGCCCTGTTCTTGGGTATTTGGCAGCT 1797
Query 1949 GGAATTCTGATTGGTCCGTATGGTCTTTCGATAATCCGTAATGTGCACGGAACCAGGGCC 2008
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1798 GGAATTCTGATTGGTCCTTATGGTCTTTCCATAATCCGTAATGTGCACGGAACCAGGGCC 1857
Query 2009 ATCGCAGAATTTGGAGTAGTTTTCTTGCTTTTCAACATCGGCCTTGAGCTATCTGTTGAA 2068
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 ATCGCAGAATTTGGAGTTGTTTTCTTGCTTTTCAACATCGGCCTTGAGCTATCTGTTGAA 1917
Query 2069 AGACTGAGTTCCATGAAGAAATATGTTTTTGGATTAGGCTCAGCTCAGGTTCTGGTGACG 2128
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1918 AGACTGAGTTCCATGAAGAAATATGTTTTTGGATTAGGCTCCGCTCAGGTTCTGGTCACA 1977
Query 2129 GCAGCAGTAGTTGGATTGCTTGCCCATTATGTTGCTGGTCAGGCTGGTCCAGCAGCAATA 2188
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GCAGCAGTAGTTGGATTGATTGCCCATTATGTTGCTGGTCAGGCTGGTCCAGCAGCAATA 2037
Query 2189 GTGATTGGAAATGGCCTGGCTCTGTCGTCCACTGCTGTTGTCCTTCAGGTTCTACAAGAA 2248
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2038 GTGATTGGAAATGGCCTGGCTCTGTCCTCCACTGCTGTTGTCCTTCAGGTTCTACAAGAA 2097
Query 2249 CGAGGCGAGAGTACATCTAGACATGGAAGGGCTTCATTTTCCGTCTTGCTTTTCCAGGAT 2308
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 CGAGGTGAGAGTACATCTAGACATGGAAGGGCTTCATTTTCCGTCTTGCTTTTCCAGGAT 2157
Query 2309 CTAGCTGTAGTTGTTTTACTGATTCTCATCCCACTTATTTCACCTAATTCATCGAAAGGA 2368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 CTAGCTGTAGTTGTTTTACTGATTCTCATCCCACTTATTTCACCTAATTCATCGAAAGGA 2217
Query 2369 GGGATTGGATTTCAAGCCATTGCTGAAGCTCTTGGGCTTGCTGCAGTCAAAGCAGCAGTG 2428
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 GGGATTGGATTCCAAGCCATTGCTGAAGCTCTTGGGCTTGCTGCAGTCAAAGCAGCAGTG 2277
Query 2429 GCTATTACTGCAATAATTGCTGGTGGCCGTCTACTTCTTCGACCAATCTACAAGCAAATT 2488
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2278 GCTATTACTGCCATAATTGCTGGTGGCCGTCTTCTTCTTCGACCAATCTACAAGCAAATT 2337
Query 2489 GCAGAAAATCGAAACGCCGAGATATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACT 2548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2338 GCAGAAAATCGAAACGCCGAGATATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACT 2397
Query 2549 AGTTTACTGACAGCTAGGGCTGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTA 2608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 AGTTTACTGACAGCTAGGGCTGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTA 2457
Query 2609 CTCCTTGCAGAGACAGAATTTTCGTTGCAAGTAGAATCAGATATTGCTCCATATCGTGGT 2668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2458 CTCCTTGCAGAGACAGAATTTTCGTTGCAAGTAGAATCAGATATTGCTCCATATCGTGGT 2517
Query 2669 CTTCTGTTGGGACTCTTCTTCATGACGGTTGGAATGTCAATTGATCCGAAATTACTTCTC 2728
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2518 CTTCTGCTGGGACTCTTCTTCATGACGGTTGGCATGTCAATTGATCCGAAATTACTTCTC 2577
Query 2729 TCCAACTTCCCTGTCATAGTGGGAACTTTGGGACTCTTGATAGTGGGCAAA-ACTATGTT 2787
||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct 2578 TCCAACTTCCCTGTCATAGTGGGAACTTTGGGACTCTTGATTGTGGG-AAAGACTATGTT 2636
Query 2788 AGTCGTGATTATGGGAAAATTGTTCGGCATATCAATAATATCTGCAATTCGGGTCGGTCT 2847
||||||||||||||||||| |||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 2637 AGTCGTGATTATGGGAAAAGTGTTTGGCATTTCAATTATATCTGCAATTCGAGTCGGTCT 2696
Query 2848 ACTATTGGCCCCAGGCGGAGAGTTTGCATTTGTTGCTTTCGGAGAAGCTGTTAATCAGGG 2907
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2697 ACTATTGGCCCCAGGCGGAGAATTTGCATTTGTTGCTTTCGGAGAAGCTGTTAATCAGGG 2756
Query 2908 TATAATGTCTCCTCAGTTATCTTCGTTGCTATTCCTTGTCGTGGGAATCTCAATGGCTAT 2967
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2757 TATAATGTCTCCTCAGTTATCTTCGTTGCTATTTCTTGTCGTGGGAATCTCAATGGCTAT 2816
Query 2968 CACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGT 3027
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2817 CACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGATTTGAGTTGCATGATGT 2876
Query 3028 TCGAAGTTTATTGCCCGTCGAGAGTGAGACAGATGATTTGCAGGGTCACATAATTATTTG 3087
||||||||||||||| || ||||||||||| |||||||| |||| |||||||||||||||
Sbjct 2877 TCGAAGTTTATTGCCTGTTGAGAGTGAGACGGATGATTTACAGGATCACATAATTATTTG 2936
Query 3088 TGGATTTGGTCGAGTTGGTCAGATAATTGCTCAACTTCTCTCGGAAAGACTTATCCCATT 3147
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2937 CGGATTTGGTCGAGTTGGTCAGATAATTGCTCAGCTTCTCTCGGAAAGACTTATCCCATT 2996
Query 3148 TGTTGCCCTTGATGTCAGCAGTGATAGAGTGACTATCGGGCGTTCCTTGGATCTTCCTGT 3207
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2997 TGTTGCCCTCGATGTCAGCAGTGATAGAGTGACTATTGGGCGTTCTTTGGATCTTCCTGT 3056
Query 3208 TTATTTCGGAGACGCTGGTAGTAAAGAGGTTCTCCACAAAATTGGAGCTGGGAGAGCATG 3267
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 3057 TTATTTCGGAGACGCTGGTAGTAGAGAGGTTCTCCACAAAATTGGAGCTGAGAGAGCATG 3116
Query 3268 TGCTGCTGTGGTTGCCTTAGACGCACCAGGAGCAAACTACAGATGTGTTTGGGCTTTGAG 3327
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3117 TGCTGCTGTGGTTGCCTTAGACGCACCAGGAGCAAACTACAGATGTGTCTGGGCTTTGAG 3176
Query 3328 CAAGTTTTACCCCAATGTCAAAACTTTTGTCCGTGCTCACGATGTTGTTCATGGTCTTAA 3387
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3177 CAAGTATTACCCCAATGTCAAAACTTTTGTCCGTGCACACGATGTTGTTCATGGTCTTAA 3236
Query 3388 TCTAGAAAAAGCCGGTGCTACTGCAGTTGTCCCGGAGACTCTGGAGCCTAGTCTACAGTT 3447
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3237 TCTAGAAAAAGCTGGTGCTACTGCGGTTGTCCCGGAGACTCTGGAGCCTAGTCTACAGTT 3296
Query 3448 GGCAGCTGCTGTTCTTGCTCAGGCAAAATTACCGACATCGGAAATTGCAAACACGATTAA 3507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3297 GGCAGCTGCTGTTCTTGCTCAGGCAAAATTACCGACATCGGAAATTGCAAACACGATTAA 3356
Query 3508 CGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAGCTATGTGAAGCAAGCGGAAGCTC 3567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3357 CGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAGCTATGTGAAGCAAGCGGAAGCTC 3416
Query 3568 TCTAGGCTATGGGTACTCTAGGACGAGTAAGCCTAAACCTCAACCATCGGATGCATCTGG 3627
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 3417 TCTAGGCTATGGGTACTCGAGGACGAGTAAGCCTAAACCTCAACCGTCGGATGCATCTGG 3476
Query 3628 CGATAACCAGATAATCGAAGGAGGCACAGTCGTAATCTGA 3667
|||||||||||||||||||||||||||||| | |||||||
Sbjct 3477 CGATAACCAGATAATCGAAGGAGGCACAGTAGCAATCTGA 3516
Score = 202 bits (109), Expect = 2e-50
Identities = 133/145 (92%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 86 ATGGAGTATGCGTCTACTTTTCAAAGGCCGATTCTATTCCATGGTGGAGATGGTGCGAGT 145
||||| | |||||||||||||||| |||||| |||||| ||||||||||| |||||||||
Sbjct 1 ATGGATTTTGCGTCTACTTTTCAACGGCCGACTCTATTTCATGGTGGAGACGGTGCGAGT 60
Query 146 TACTGCTTTCCAAATCGATTGATAAGTCCTAAAGGAATCAGCATTACATCTGGGGATTCT 205
|||||||||||||||||||| |||||||| |||||||||| |||||| | ||||||||||
Sbjct 61 TACTGCTTTCCAAATCGATTTATAAGTCCCAAAGGAATCAACATTACGTTTGGGGATTCT 120
Query 206 AAAGTGCATTCGTGTTTTCGATTGA 230
|||||||| ||||||||||||||||
Sbjct 121 AAAGTGCACTCGTGTTTTCGATTGA 145
> Ahg490505 jgi|Araly1|490505|fgenesh2_kg.6__3639__AT4G00630.1
Length=2292
Score = 2278 bits (1233), Expect = 0.0
Identities = 1865/2171 (86%), Gaps = 40/2171 (2%)
Strand=Plus/Plus
Query 1503 CCAAGGCATCGTTTAATAAATCCTCCCGTTTCTTTT-CTGCATCTTTCTTCTCTTCTAAT 1561
||||| |||| || || |||||||| ||||| |||| ||||||||||||||||||| |||
Sbjct 1 CCAAGACATCATTGAAGAAATCCTCTCGTTT-TTTTCCTGCATCTTTCTTCTCTTCCAAT 59
Query 1562 CCAGATGGGACCGCGACAGTGTTTG-GTAGTCTGGTTGGTTCTGTC-AAACAGCAATGGC 1619
|||| ||||||||||| |||| | ||| | |||| |||| | |||||||| ||||
Sbjct 60 GGGGATGAAACCGCGACAGTTTTTGAG-AGTTTAGTTGAATCTG-CGAAACAGCAGTGGC 117
Query 1620 CCAAACTAGTTCTTGGGCTTGCTCTTCTTGGAGCA-GG--ACTGACATTATACTCCAATG 1676
| || ||| ||||||| |||| |||||||| ||| || | || || | || |||||||
Sbjct 118 CTAAGCTAATTCTTGGATTTGCACTTCTTGGGGCAGGGTTAGTGGCAATCTATTCCAATG 177
Query 1677 GAGTAGGGGGGAACAACCAGTTGCTTCAACAGCCAGATGTTACCAGCACTAGTACAGAAG 1736
||||||| ||||||| ||| |||| ||||||||| || || |||||||| ||||||
Sbjct 178 GAGTAGGAAGGAACAATCAGCTGCTACAACAGCCAAATATTGTCAGCACTACCGCAGAAG 237
Query 1737 ATGTCTCTTCAAGTACGAAGCCACTGATCCGGCAAGTGCAGAAACTTCCCAAGAGAATTA 1796
|||| || || || || || || ||||||||||| ||||| |||||||| |||||||| |
Sbjct 238 ATGTTTCCTCCAGCACAAAACCTCTGATCCGGCAGGTGCAAAAACTTCCAAAGAGAATAA 297
Query 1797 AGAAACTACTTGAGATGATCCCTCACCAGGAGGTCAATGAGGAAGAAGCTTCCC-TCTTT 1855
||||||||||||||||| ||||||| || ||||| ||||||||||||||||||| || |
Sbjct 298 AGAAACTACTTGAGATGTTCCCTCAGCAAGAGGTTAATGAGGAAGAAGCTTCCCTTC-TC 356
Query 1856 GACT-TTTTGTGGTTACTGCTAGCAAGCGTCATATTTGTGCCTCTATTTCAGAAAATTCC 1914
|| | | || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 357 GA-TGTGTTATGGTTACTGCTTGCAAGCGTCATATTCGTGCCTCTATTTCAGAAAATTCC 415
Query 1915 TGGAGG-CAGCCCTGTTCTTGGGTATTTGGCAGCTGGAATTC-TGATTGGTCCGTATGGT 1972
||| || | ||||||||||||||||||||| || |||| || |||||||||| ||||||
Sbjct 416 TGGCGGTAACCCCTGTTCTTGGGTATTTGGCGGCGGGAA-TCTTGATTGGTCCTTATGGT 474
Query 1973 CTTTCGATAATCCGTAATGTGCACGGAACCAGGGCCATCGCAGAATTTGGAGTAGTTTTC 2032
|| || ||||| ||||||||||| ||||||| |||||| |||||||||||||| || |||
Sbjct 475 CTCTCAATAATTCGTAATGTGCATGGAACCAAGGCCATTGCAGAATTTGGAGTTGTCTTC 534
Query 2033 TTGCTTTTCAACATCGGCCTTGAGCTATCTGTTGAAAGACTGAGTTCCATGAAGAAATAT 2092
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 535 TTGCTTTTCAACATTGGCCTTGAGCTCTCTGTTGAAAGACTTAGTTCCATGAAGAAATAT 594
Query 2093 GTTTTTGGATTAGGCTCAGCTCAGGTTCTGGTGACGGCAGCAGTAGTTGGATTGCTTGCC 2152
|||||||| |||||||| || ||||||||||| || ||||||||| |||| ||| | |
Sbjct 595 GTTTTTGGGTTAGGCTCCGCGCAGGTTCTGGTAACAGCAGCAGTAATTGGTTTGATCACT 654
Query 2153 CATTATGTTGCTGGTCAGGCTGGTCCAGCAGCAATAGTGATTGGAAATGGCCTGGC-TCT 2211
|| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||| | |
Sbjct 655 CACTATGTTGCTGGTCAGGCTGGTCCAGCGGCAATAGTAATTGGCAATGGCCTGGCAT-T 713
Query 2212 GTCGTCCACTGCTGTTGTCCTTCAGGTTCTACAAGAACGAGGCGAGAGTACATCTAGACA 2271
||| |||||||||||||||||||||||| |||||||||| || ||||| || || |||||
Sbjct 714 GTCTTCCACTGCTGTTGTCCTTCAGGTTTTACAAGAACGGGGTGAGAGCACCTCAAGACA 773
Query 2272 TGGAAGGGCTTCATTTTCCGTCTTGCTTTTCCAGGATCTAGCTGTAGTTGTTTTACTGAT 2331
|||| | ||| ||||||| ||||||||||| |||||||| ||||| || || ||||||||
Sbjct 774 TGGACGAGCTACATTTTCGGTCTTGCTTTTTCAGGATCTGGCTGTCGTCGTGTTACTGAT 833
Query 2332 TCTCATCCCACTTATTTCACCTAATTCATCGAAAGGAGGGATTGGATTTCAAGCCATTGC 2391
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 834 TCTCATCCCACTTATTTCACCTAATTCATCCAAAGGAGGGATTGGATTTCAAGCCATTGC 893
Query 2392 TGAAGCTCTTGGGCTTGCTGCAGTCAAAGCAGCAGTGGCTATTACTGCAATAATTGCTGG 2451
|||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||||||||||
Sbjct 894 TGAAGCTCTTGGACTTGCTGCAATCAAAGCAGCAGTTGCTATCACTGCCATAATTGCTGG 953
Query 2452 TGGCCGTCTACTTCTTCGACCAATCTACAAGCAAATTGCAGAAAATCGAAACGCCGAGAT 2511
||||||||| ||||| || || || |||||||||||||||||||| ||||| || |||||
Sbjct 954 TGGCCGTCTCCTTCTGCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGAT 1013
Query 2512 ATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACTAGTTTACTGACAGCTAGGGCTGG 2571
|||||| ||||| || ||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1014 ATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGCTTACTTACAGCTAGGGCGGG 1073
Query 2572 ACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTCCTTGCAGAGACAGAATTTTC 2631
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1074 ACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTC 1133
Query 2632 GTTGCAAGTAGAATCAGATATTGCTCCATATCGTGGTCTTCTGTTGGGACTCTTCTTCAT 2691
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1134 CTTGCAAGTTGAATCAGATATTGCTCCATACCGTGGTCTTCTGTTGGGACTCTTCTTCAT 1193
Query 2692 GACGGTTGGAATGTCAATTGATCCGAAA-TTACTTCTCTCCAACTTCCCTGTCATAGTGG 2750
||||||||| ||||| |||||||| ||| || |||||| ||||||||||||||||| |||
Sbjct 1194 GACGGTTGGCATGTCCATTGATCCAAAACTT-CTTCTCGCCAACTTCCCTGTCATAATGG 1252
Query 2751 GAACTTTGGGACTCTTGAT-AGTGGGCAAAACTATGTTAGTCGTGATTATGGGAAAATTG 2809
| || || |||||||| || ||| ||||| ||||| ||||| ||||| || || ||||||
Sbjct 1253 GGACCTTAGGACTCTT-ATTAGTTGGCAAGACTATATTAGTGGTGATCATAGGCAAATTG 1311
Query 2810 TTCGGCATATCAATAATATCTGCAATTCGGGTCGGTCTACTAT-TGGCCCCAGGCGGAGA 2868
|| ||||| ||||| |||||||| | | |||||||| || | |||| || || |||||
Sbjct 1312 TTTGGCATTTCAATCATATCTGCCGTGAGAGTCGGTCTTCT-TCTGGCTCCTGGTGGAGA 1370
Query 2869 GTTTGCATTTGTTGCTTTCGGAGAAGCTGTTAATCAGGGTATAATGTCTCCTCAGTTATC 2928
|||||| ||||||||||| ||||||||||| || |||||||||||| || | ||| ||||
Sbjct 1371 GTTTGCGTTTGTTGCTTTTGGAGAAGCTGTCAACCAGGGTATAATGACTTCGCAGCTATC 1430
Query 2929 TTCGTTGCTATTCCTTGTCGTGGGAATCTCAATGGCTATCACACCCTGGTTAGCTGCTGG 2988
||||||||| || || ||||||||||| ||||||||| | || || ||||||||||| ||
Sbjct 1431 TTCGTTGCTGTTTCTCGTCGTGGGAATATCAATGGCTCTTACTCCTTGGTTAGCTGCCGG 1490
Query 2989 TGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGTTCGAAGTTTATTGCCCGTCGA 3048
||||| |||||||| ||||| |||||||| || ||||||||||||||||| || || ||
Sbjct 1491 CGGCCAATTAATTGCGTCTCGATTTGAGTTACAAGATGTTCGAAGTTTATTACCAGTTGA 1550
Query 3049 GAGTGAGACAGATGATTTGCAGGGTCACATAATTATTTGTGGATTTGGTCGAGTTGGTCA 3108
|| ||||| |||||||| ||||||||||| |||||||| |||||||| ||| |||||||
Sbjct 1551 AAGCGAGACGGATGATTTACAGGGTCACATCATTATTTGCGGATTTGGACGAATTGGTCA 1610
Query 3109 GATAATTGCTCAACTTCTCTCGGAAAGACTTATCCCATTTGTTGCCCTTGATGTCAGCAG 3168
|||||| ||||| ||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1611 GATAATCGCTCAGCTTCTTTCCGAAAGACTTATCCCATTTGTTGCCCTCGATGTCAGCAG 1670
Query 3169 TGATAGAGT-GACTATCGGGCGTTCCTTGGATCTTCCTGTTTATTTCGGAGACGCTGGTA 3227
||||||||| | | || || |||||| | |||||||| |||||||| |||||||||||||
Sbjct 1671 TGATAGAGTAG-CAATTGGTCGTTCCCTAGATCTTCCAGTTTATTTTGGAGACGCTGGTA 1729
Query 3228 GTAAAGAGGTTCTCCACAAAATTGGAGCTGGGAGAGCATGTGCTGCTG-TGGTTGCCTTA 3286
||| |||||| |||||||||||||| || | |||||||||||||| | | |||| |||
Sbjct 1730 GTAGAGAGGTACTCCACAAAATTGGGGCAGATAGAGCATGTGCTGCGGCTA-TTGCTTTA 1788
Query 3287 GACGCACCAGGAGCAAACTACAGATGTGTTTGGGCTTTGAGCAAGT-TTTACCCCAATGT 3345
||| |||| |||||||| ||||| ||||| |||||| | ||||| | ||| ||| |||||
Sbjct 1789 GACACACCTGGAGCAAATTACAGGTGTGTCTGGGCTCTCAGCAAATATTTTCCC-AATGT 1847
Query 3346 CAAAACTTTTGTCCGTGCTCACGATGTTGTTCATGGTCTTAATCTAGAAAAAGCCGGTGC 3405
|||||| ||||||||||| || || |||| |||||| || ||||| ||||||||||||||
Sbjct 1848 CAAAACCTTTGTCCGTGCACATGACGTTGATCATGGCCTCAATCTCGAAAAAGCCGGTGC 1907
Query 3406 TACTGCAGTTGTCCCGGAGACTCTGGAGCCTAGTCTACAGTTGGCAGCTGCTGTTCTTGC 3465
||| || ||||| || ||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1908 TACCGCTGTTGTTCCTGAGACGCTGGAACCAAGTCTACAGTTGGCAGCTGCTGTTCTTGC 1967
Query 3466 TCAGGCAAAATTACCGACATCGGAAATTGCAAACA-CGATTAACGAGTTCAGAACCCGTC 3524
||||| ||||||||||| || |||||||||| || |||| ||||| |||||| | ||||
Sbjct 1968 ACAGGCCAAATTACCGACGTCAGAAATTGCAA-CAACGATCAACGAATTCAGATCTCGTC 2026
Query 3525 ACTTGTCTGAACT-GACCGAGCTATGTGAAGCAAGCGGAAGCTCTCTAGGCTATGGGTAC 3583
||||||||||| | | ||||||||||||| ||||| |||||||||||||| || |||| |
Sbjct 2027 ACTTGTCTGAATTAG-CCGAGCTATGTGAGGCAAGTGGAAGCTCTCTAGGTTACGGGTTC 2085
Query 3584 TCTAG--G-ACGAGTAAGCCTAAACCTC-A--ACCATCGGATGCATCTGGCGATAACCAG 3637
|| || | ||||| || || ||||| | | |||||| ||| | |||| ||||||||||
Sbjct 2086 TCAAGAAGTACGAGCAAACCAAAACCACCATCACCATCTGATACGTCTGACGATAACCAG 2145
Query 3638 ATAATCGAAGG 3648
|| || |||||
Sbjct 2146 ATTATTGAAGG 2156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147092519645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5