BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01800.1
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918775 jgi|Araly1|918775|scaffold_100056.1 1519 0.0
> Ahg918775 jgi|Araly1|918775|scaffold_100056.1
Length=931
Score = 1519 bits (822), Expect = 0.0
Identities = 896/932 (96%), Gaps = 3/932 (0%)
Strand=Plus/Plus
Query 33 TCTCTGTCCTTTCAAC-AATTCAATGGCAGACCCAAGAGTTGCAGTTGTTACTGGTTCCA 91
|||||||| ||||| | ||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1 TCTCTGTCATTTCATCAAATCCAATGGCAAACACAAGAGTTGCAGTTGTTACTGGTTCCA 60
Query 92 ACAAAGGGATTGGGTTTGAGATTTGCAGGCAACTAGCTAACAATGGGATAACTGTGGTTT 151
|||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 61 ACAAAGGGATCGGGTTTGAGACTTGCAGGCAACTAGCTAAAAATGGGATAACTGTGATTC 120
Query 152 TAACTGCGAGAGATGAAAACAAGGGTCTTGCTGCTGTCCAAAAGCTCAAGACTGAGAATG 211
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAACTGCCAGAGATGAGAACAAGGGTCTTGCTGCTGTCCAAAAGCTCAAGACTGAGAATG 180
Query 212 GTTTTTCTGATCAAGCCATCTCCTTTCACCCTCTTGATGTCTCCAACCCAGACACCATCG 271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTTTCTGATCAAGCCATCTCCTTTCACCCTCTTGATGTCTCCAACCCAGACACCATCT 240
Query 272 CTTCTCTTGCTGCTTTTGTCAAGACCCGCTTCGGCAAACTCGATATTCTGGTTAATAATG 331
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCTCTTGCTGCTTTTGTTAAGACCCGCTTCGGCAAACTCGATATTCTGGTTAATAATG 300
Query 332 CCGGAGTTGGAGGGGCGAATGTTAATGTTGATGTTCTCAAAGCTCAGATTGCTGAGGCTG 391
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 CCGGAGTTGGAGGGGCCAATGTTAATGTCGATGTTCTCAAAGCTCAGATTGCTGAGGCTG 360
Query 392 GTGCGCCAACTGATATTTCCAAGATAATGAGTGATACATATGAGATAGTCGAGGAGTGTG 451
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GTGCGCCAACTGATATTTCCAAGATAATGAGCGATACATATGAGATAGTCGAGGAGTGTA 420
Query 452 TTAAAACAAACTACTACGGCGTTAAGCGAATGTGCGAGGCCATGATTCCTCTCCTTCAAT 511
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 421 TTAAAACAAACTACTATGGCGTAAAACGAATGTGCGAGGCCATGATTCCTCTCCTTCAAT 480
Query 512 CTTCTGATTCCCCAAGAATCGTCAGCATCGCTTCCACCATGGGAAAGTTAGAGAATGTTT 571
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 CTTCTGATTCCCCAAGAATCGTCAGCATCGCTTCAACCATGGGAAAGTTAGAGAATGTTT 540
Query 572 CAAATGAATGGGCAAAAGGAGTGCTGAGTGATGCTGAGAACCTAACAGAAGAGAAAATAG 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAAATGAATGGGCAAAAGGAGTGCTGAGTGATGCTGAGAACCTAACAGAAGAGAAAATAG 600
Query 632 ATGAAGTGATCAATGAGTACCTCAAGGATTACAAAGAAGGTGCATTACAAGTCAAAGGTT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGAAGTGATCAATGAGTACCTCAAGGATTACAAAGAAGGTGCATTACAAGTCAAAGGTT 660
Query 692 GGCCAACAGTGATGTCTGGATACATACTATCGAAAGCTGCAGTGATCGCATTGACACGAG 751
|||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 661 GGCCAACAGTAATGTCCGGATACATACTATCAAAAGCTGCAGTGATTGCATTGACACGAG 720
Query 752 TATTGGCTAAGCGACACAAATCGTTCATCATCAACAGTGTTTGTCCTGGTTTCGTAAACA 811
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TATTGGCCAAGCGAAACAAATCGTTCATCATCAACAGTGTTTGTCCTGGTTTCGTAAACA 780
Query 812 CAGAAATCAATTTCAACACTGGGATCTTGAGCGTTGAAGAAGGTGCAGCGAGTCCAGTGA 871
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 CAGAAATCAATTTCAACACTGGGATATTGAGCGTTGAAGAAGGTGCAGCGAGTCCAGTGA 840
Query 872 AACTGGCTTTGGTCCCTAATGGAGACCCATCTGGTCTTTTCTTTGATCGCGCCAATGTCT 931
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 AACTGGCTTTGGTCTCTAATGGAGACCCATCTGGCCTTTTCTTTGATCGCGCCAATGTCT 900
Query 932 CCAACTTTTGA-TTCTTCAATCTTATGTGTTC 962
||||||||||| || ||| ||||| |||||||
Sbjct 901 CCAACTTTTGACTT-TTCGATCTTGTGTGTTC 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40753398273
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5