BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01810.1

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470095 jgi|Araly1|470095|fgenesh2_kg.1__49__AT1G01810.1           424    5e-118


> Ahg470095 jgi|Araly1|470095|fgenesh2_kg.1__49__AT1G01810.1
Length=531

 Score =  424 bits (229),  Expect = 5e-118
 Identities = 448/541 (83%), Gaps = 66/541 (12%)
 Strand=Plus/Plus

Query  22   ATGAAGCCGG--AA-ACTAAGAGAAGCACCGCCACAACAAGACGGCGGACCAATGAC---  75
            ||||||||||  || |||||||||| ||||| |||  ||||||||||||||||||||   
Sbjct  1    ATGAAGCCGGAAAATACTAAGAGAAACACCG-CAC--CAAGACGGCGGACCAATGACGAT  57

Query  76   GGTGGTTCTCCGTTCAATTTCAGCTCTCTCAAGCAAGCGATCGAGGCCATAGATGCTGCA  135
            ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| 
Sbjct  58   GGTTGTTCTCCGTTCAATCTCAGGTCTCTCAAGCAAGCGATCGAGGCCATAGATGCTGCC  117

Query  136  AAGGATACTTCAATCAATCTATCGTCGTTGTCTGTGGCGTTATCCGCCGCGAGTCGTGAG  195
            ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  118  AAGGATAATTCAATCAATCTATCGTCGTTGTCTGTGGCGTTATCGGCCGCGAGTCGTGAG  177

Query  196  ATGAAGCAAAGGAAGGAGAAATCTCACCGTAGGCGAGAAACCAGGAAGAGGGACaagaag  255
            |||||||||| |  |||||||||||| ||||||||||||| |     || ||  ||| ||
Sbjct  178  ATGAAGCAAA-G--GGAGAAATCTCAGCGTAGGCGAGAAA-C-----GA-GG--AAG-AG  224

Query  256  aagaagaagaagaagGATAGTAACAACAATACGAAGCTAGTGATCGGAACAAAGCCGGAA  315
              | ||  |||||| || | |       | | ||||||||||||||||||||||||||||
Sbjct  225  --G-AG--GAAGAA-GA-A-T-------A-A-GAAGCTAGTGATCGGAACAAAGCCGGAA  267

Query  316  ACGGATGCAGAATTGCGAAGATGGTTTTCATACTTCGACAAATCCTTTAAACTATCATTG  375
            ||||| |||||||||||| ||||||||||| ||||||||||||| || ||||||||||||
Sbjct  268  ACGGACGCAGAATTGCGACGATGGTTTTCAAACTTCGACAAATCGTTCAAACTATCATTG  327

Query  376  CCGAGAAAGGTGAAACTAACATCGCCGAGAAAGCTCAACGATCATAATAAAAACTTGAAG  435
            ||||      |    | |     |   | || ||||||| ||||| |||||| ||  |||
Sbjct  328  CCGA------T----C-A-----G---A-AA-GCTCAACAATCATCATAAAACCTCCAAG  366

Query  436  GAAGCGCCGATTTGTGAGTTGAATACAGATTTCTCGATGAATCACTGCTCTGAATCCTTT  495
            ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  367  GAAGCGCAGATTTGTGAATTGAATACAGATTTCTCGATGAATCACTGCTCTGAATCCTTT  426

Query  496  AGATACTAGGAACAACGCTTAG--CTTCAtttttttctttttCCTACTCTATGAAAATGT  553
            ||| | |||| |||| |||||   ||||||||||| ||||||  || || |||||| |||
Sbjct  427  AGACATTAGGCACAATGCTTAATTCTTCATTTTTT-CTTTTT--TATTCAATGAAA-TGT  482

Query  554  T  554
            |
Sbjct  483  T  483


 Score =  111 bits (60),  Expect = 5e-24
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  573  TTTATTCAATGAAATGTTGGAGATGATGAGTGCATGCGTTACGCGATCATAAATAATAAT  632
            ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  466  TTTATTCAATGAAATGTTGGAGATGATGAATGCATGCGTTACGCGATCATTAATAATAAT  525

Query  633  GAGAAT  638
            ||||||
Sbjct  526  GAGAAT  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23407471038


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5