BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01820.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470094 jgi|Araly1|470094|fgenesh2_kg.1__48__AT1G01820.1 1328 0.0
> Ahg470094 jgi|Araly1|470094|fgenesh2_kg.1__48__AT1G01820.1
Length=953
Score = 1328 bits (719), Expect = 0.0
Identities = 871/938 (93%), Gaps = 36/938 (4%)
Strand=Plus/Plus
Query 65 ACTCTGTTTAT-CTTCTCCGA-GCTCGTACGAGAATATTCGTAAA-GGTTTCTT-GTGAG 120
||||||||| | ||||||| | |||||||||||||||||||||| ||||| || |||||
Sbjct 45 ACTCTGTTT-TGCTTCTCC-ATACTCGTACGAGAATATTCGTAAAGGGTTT-TTCGTGAG 101
Query 121 CTTAAACGATGAGTACCCTTGAGACCACAAGAGCTGAGCTTGGTCTGGTAGTTG-TGTAT 179
||| ||| |||||||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 102 CTT-AACAATGAGTACCCTTGAGACCACGAGAGCTGAGCTTGGTCTGGTAG-TGTTGTAT 159
Query 180 TTGAATAAAGCGGAGGCGAGAGACAAGATTTGTCGAGCTATTCAATATGGTTCCAAGTTC 239
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 160 TTGAATAAAGCGGAGGCGAGGGACAAGATTTGCCGAGCTATTCAATATGGTTCCAAGTTC 219
Query 240 TTGAGTGATGGCCAACCTGGCACTGCTCAAAATGTCGACAAGAACACCAGCTTGGCTAGG 299
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 220 TTGAGTGATGGACAACCTGGCACTGCTCAAAATGTCGACAAGTCCACCAGCTTGGCTAGA 279
Query 300 AAAGTTTTCCGTCTCTTCAAGTTTGTAAATGATCTTCATGCTCTCATTAGCCCTGTTCCC 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 280 AAAGTTTTCCGTCTCTTCAAGTTTGTGAATGATCTTCATGCTCTCATTAGCCCTGTTCCC 339
Query 360 AAAGGGACTCCACTCCCGCTTGTTCTGCTCGGAAAGTCTAAAAACGCGTTGCTGTCAACG 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 340 AAAGGGACTCCACTCCCGCTTGTTCTCCTCGGAAAGTCTAAAAACGCGTTGCTGTCAACG 399
Query 420 TTCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAGGACAAAGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TTCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAGGACAAAGAA 459
Query 480 CGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACA 539
||||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 460 CGTGCTGAGCTTCTTGGACGTATATCCCTTTTCTGTTGGATGGGTTCTTCCGTCTGCACA 519
Query 540 TCCTTGGTTGAGGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAA 599
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TCCTTGGTTGAGGTTGGAGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAA 579
Query 600 GAGATAGGGAACAAGGATAAACACCAGAATGAGCAATACCGTGCAAAAGTAGAGAAATCA 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 580 GAGATAGGGAACAAGGATAAACACCAGAATGAGCAATACCGTGCAAAACTAGAGAAATCA 639
Query 660 AACGAGAGGTCATTGGCTCTGATCAAAGCAGGGATGGATGTAGTTGTTGCTTTCGGATTG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 AACGAGAGGTCATTGGCTCTGATCAAAGCAGGGATGGATGTAGTTGTTGCTTTCGGATTG 699
Query 720 CTTCAATTGGCTCCAAAGAAAGTCACTCCCCGAGTCACAGGTGCTTTCGGATTCGCCTCA 779
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 700 CTTCAATTGGCTCCAAAGAAAGTCACACCCCGAGTCACAGGCGCTTTCGGATTCGCCTCC 759
Query 780 TCACTTATCTCTTGTTATCAGCTATTGCCGTCACATCCCAAGTCCAAGATGGTCTGATAA 839
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 760 TCACTTATCTCTTGTTATCAGTTATTGCCGTCACATCCCAAGTCCAAGACGGTCTGAGAA 819
Query 840 AAGGGAAACAAGGAAAGGCGAACTAGTTTCATTGTCCACATGTTCCATATATAGTTTGTG 899
|||||||| |||||||| | |||||||||||||||||| ||||||||||||| |
Sbjct 820 AAGGGAAAGAAGGAAAGACAAACTAGTTTCATTGTCCAGATGTTCCATATAT--T----- 872
Query 900 TCTGTTTTACTATTACTTGGTGTTAAATTTGTCTTGCTTGACTACTTTA-ATG-TTTGTG 957
||| | ||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 873 --------ACT-T-----GGTGTTAAATTTGTCTTGCTTGA-TACTTTTTATGGTTTGTG 917
Query 958 TTAGATTCTATGGTATATAAGATAATGATAAACATTGC 995
||||||| ||| ||||| ||||||||||||||||||
Sbjct 918 TTAGATTTTATAGTATAG--GATAATGATAAACATTGC 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5