BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01830.2
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470092 jgi|Araly1|470092|fgenesh2_kg.1__46__AT1G01830.3 2911 0.0
> Ahg470092 jgi|Araly1|470092|fgenesh2_kg.1__46__AT1G01830.3
Length=2305
Score = 2911 bits (1576), Expect = 0.0
Identities = 1955/2128 (92%), Gaps = 66/2128 (3%)
Strand=Plus/Plus
Query 19 AGTGAGGAACATAAAGAACTGGGGA-ACATTTTGGATATTTTTTCTCCAAGTGAAGTTAA 77
||||||||||||| ||||||||||| | ||||||||| |||||||| ||||||||||| |
Sbjct 228 AGTGAGGAACATAGAGAACTGGGGAGA-ATTTTGGATCTTTTTTCTTCAAGTGAAGTT-A 285
Query 78 AAGGAACAAGGAGACAAGGT-TGGAGTCGACCAATCATTGATCG-AGCT-AGAGAA-ATC 133
||| ||||||| |||||||| || | | | || || || | || | ||| ||
Sbjct 286 AAGTAACAAGGGGACAAGGTAAGGTTTTGGCTTTTC-TTTAT-GTTTCTCACTGAACAT- 342
Query 134 TGGCTACAATTC-AA-TTTCAGA-TGAGGTTTTCAAAAACACAGAAG-ATGAATGTTCAA 189
| | | || || || ||| || | | |||| || || || || |||||||||
Sbjct 343 T--CAAGAACTCAAAGTTT-TGATTTTTCTCTTCATCTTCAAAG-AGAATAAATGTTCAA 398
Query 190 ATAGCATAAGAAGCTGTGAATTTTCTTCTTTCTTTTTTGTCCAATGGGAACAATGGCAGA 249
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 399 ATAGCGTAAGAAGCTGTGAATTTTCTTTTTTC-TTTTTGTCCAATGGGAACAATGGCAGA 457
Query 250 ATTGGGAACCATGGGAAAATTTGGAGCCATGGCAGAAGAGCAGCAAGTTAACCAGATGAT 309
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 458 ATTGGGAACCATGGGAAAGTTTGGAGCCATGGCAGAAGAGCAGCAAGTTAACCAGATGAT 517
Query 310 CATGGATAAACAATCAGTAGAAGAATGGCTATCGCGCGTCAACTCGCTAATACCATCCGT 369
||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 518 CATGGATAAACAATCAGCAGAAGAATGGCTATCGCGCGTCCATTCGCTAATACCATCCGT 577
Query 370 CCTCAGCAAGGCAAAAACGGTTAAGAAGTTTACAGGAAGATGGAAGACGATCATCTCGAA 429
|||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct 578 CCTCAGCAAGGCAAAAACAGTTAAGAATTTTACAGGACGATGGAAGACGATAATCTCAAA 637
Query 430 GATCGAACAGATACCAGCTTGTTTATCTGACCTCTCAAGCCACCCTTGCTTCTCCAAGAA 489
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 638 GATCGAACAGATACCAGCTTGTTTATCTGACCTCTCAAGCCACCCTTGTTTCTCCAAGAA 697
Query 490 CAAGCTCTGCAACGAGCAGTTGCAATCTGTGGCTAAGACGCTTAGTGAAGTGATAGAGCT 549
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 698 CAAGCTCTGCAACGAGCAGTTGCAATCTGTGGCTAAGACTCTTGGTGAAGTGATAGAGCT 757
Query 550 TGCAGAGCAGTGTTCAACTGACAAGTATGAAGGGAAGCTGCGTATGCAGAGCGATCTAGA 609
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 758 TGCAGAGTTGTGTTCAACTGACAAGTATGAAGGGAAGCTGCGTATGCAGAGCAATCTCGA 817
Query 610 TTCTTTATCCGGAAAACTGGATTTGAATCTAAGAGACTGTGGGGTTTTGATCAAGACCGG 669
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 818 TGCTTTATCCGGAAAACTGGATTTGAATCTAAGAGACTGTATGGTTTTGATCAAGACCGG 877
Query 670 CGTTCTCGGTGAAGCTACGTTACCTCTTTACATTTCAAGTTCATCGGAAACACCCAAAAT 729
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 878 CGTTCTTGGTGAAGCTACATTACCTCTTTACATTTCAAGTTCATCAGAAACACCCAAAAT 937
Query 730 TTCCAGTTTAAAAGAACTTCTAGCGAGGCTACAGATCGGTCACTTGGAATCAAAACACAA 789
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 938 TTCCAGTTTAAAAGAACTTCTAGCAAGGCTACAGATTGGTCACTTGGAATCAAAACACAA 997
Query 790 TGCTCTCGAAAGCCTCCTTGGTGCAATGCAAGAAGATGAAAAGATGGTTCTTATGCCTTT 849
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 998 TGCTCTCGAAAGCCTCCTTGGTGCAATGCAAGAGGATGAGAAGATGG---TTATGCCTTT 1054
Query 850 GATCGGACGAGCCAACGTTGCAGCTTTAGTTCAGCTGCTAACAGCAACTTCGACAAGAAT 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GATCGGACGAGCCAACGTTGCAGCTTTAGTTCAGCTGCTAACAGCAACTTCGACAAGAAT 1114
Query 910 CAGAGAGAAAGCGGTGAATCTGATCAGTGTATTAGCAGAATCAGGACACTGCGACGAATG 969
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1115 CAGAGAGAAAGCGGTGAATCTGATCAGTGTATTAGCGGAATCAGGACACTGCGACGAATG 1174
Query 970 GCTTATCTCCGAAGGTGTATTGCCTCCGTTAGTGAGACTAATCGAATCAGGGAGTCTTGA 1029
|||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||
Sbjct 1175 GCTTATCTCCGAAGGTGTATTGCCTCCGCTAGTGAGGCTAATCGAATCAGGAAGTCTTGA 1234
Query 1030 AACCAAAGAAAAAGCTGCGATTGCGATCCAGAGACTGTCCATGACAGAGGAAAACGCACG 1089
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1235 AACCAAAGAAAAAGCTGCAATTGCGATCCAGAGACTGTCCATGACAGAGGACAACGCACG 1294
Query 1090 GGAAATCGCAGGACACGGCGGAATCACACCGCTTATAGATCTCTGTAAAACAGGGGATTC 1149
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1295 GGAAATCGCAGGACACGGCGGAATCACACCACTTATCGATCTCTGTAAAACAGGGGATTC 1354
Query 1150 TGTGTCACAAGCTGCGTCTGCAGCTGCTCTGAAGAACATGTCAGCAGTTTCAGAGCTGAG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1355 TGTGTCACAAGCTGCGTCTGCAGCTGCTCTGAAGAACATGTCAGCAGTTTCAGAGCTCAG 1414
Query 1210 ACAATTGCTTGCGGAAGAAGGAATAATTAGAGTCTCGATCGATCTTCTAAACCATGGGAT 1269
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct 1415 ACAATTGCTTGCGGAAGAAGGAATGGTTAGAGTCTCTATCGATCTCCTAAACCATGGGAT 1474
Query 1270 ATTGTTAGGATCAAGAGAACACATGGCCGAGTGTTTGCAGAATCTCACTGCAGCGAGCGA 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 ATTGTTAGGATCAAGAGAACACATGGCCGAGTGTTTGCAGAATCTCACTGCAGCGAGCGA 1534
Query 1330 CGCTCTACGTGAAGCCATTGTCTCAGAAGGCGGAGTTCCGAGTCTCTTGGCTTATCTCGA 1389
||||| || ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1535 GGCTCTGCGCGAAGCCATTGTTTCGGAAGGAGGAGTTCCGAGTCTCTTGGCTTATCTCGA 1594
Query 1390 CGGTCCGTTGCCGCAACAACCGGCGGTAACGGCACTGAGAAATCTAATCCCGTCGGTGAA 1449
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1595 CGGTCCATTGCCGCAAGAACCGGCCGTAACGGCACTGAGAAATCTAATCCCGTCGGTGAA 1654
Query 1450 TCCAGAGATATGGGTGGCTCTCAATTTGCTTCCACGATTGAGGCATGTACTCAAGTCAGG 1509
||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 1655 TCCAGAGATATGGGTGGCTCTCAATTTGCTTCCACGACTGACACATGTGCTCAAGTCAGG 1714
Query 1510 ATCTTTAGGCGCGCAACAAGCAGCAGCATCGGCTATTTGCCGTTTCGCTTGCTCGCCGGA 1569
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1715 ATCTTTAGGCGCGCAACAAGCAGCAGCATCGGCGATTTGCCGTTTCACTTGCTCGCCGGA 1774
Query 1570 GACGAAA-AGGCTAGTGGGAGAATCCGGTTGCATCCCGGAGATCGTGAAACTTCTGGAAT 1628
||| ||| ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1775 GAC-AAAGAGGCTAGTGGGCGAATCCGGGTGCATTCCGGAGATGGTGAAACTTCTGGAAT 1833
Query 1629 CGAAGTCAAACGGATGTCGAGAAGCGGCGGCTCAGGCGATCGCTGGATTGGT-AGCGGAA 1687
||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1834 CGAAGTCAAACGGATGTAGAGAAGCGGCGGCTCAGGCGATCGCCGGATTGGTGA-CGGAA 1892
Query 1688 GGAAGGATTCGACGGGAACTGAAGAAAGACGGGAAGAGCGTTCTGACGAATTTGGTGATG 1747
||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1893 GGAAGGATTAGACGGGAACTGAAGAAAGACGGGAAGAGCGT---GACGAATCTGGTGATG 1949
Query 1748 TTATTGGATTCAAACCCTGGAAACACGGCGAAGAAGTACGCCGTGGCGGGGCTGTTGGGG 1807
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1950 TTATTGGATTCGAACCCTGGAAACACGGCGAAGAAGTACGCAGTGGCGGGGCTGTTGGGG 2009
Query 1808 ATGTCGGGAAGCGAGAAGAGTAAGAAAATGATGGTGTCGTACGGAGCAATAGGGTATCTG 1867
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2010 TTGTCGGGAAGCGAGAAGAGTAAGAAAATGATGGTGTCGTACGGAGCGATAGGGTATCTG 2069
Query 1868 AAGAAGCTGTCGGAGATGGAAGTAATGGGCGCCGATAAGCTTCTCGAGAAGCTTGAAAGA 1927
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2070 AAGAAGCTGTCGGAGATGGAAGTAATCGGCGCCGATAAGCTTCTCGAGAAGCTTGAAAGA 2129
Query 1928 GGAAAGCTAAGAAGCTTCTTTCACCGGTAAAACGAACGATGCGGAGACATTGAAGCAGCC 1987
|||||||| ||||||||||||||||||||||| || ||| | | | | | |
Sbjct 2130 GGAAAGCTGAGAAGCTTCTTTCACCGGTAAAA--AA-GAT----A-A-A---A-G--GT- 2173
Query 1988 AAGATAAAAAGTGTAATATTGTCTGATGTAAGTTTATTAACCGTTAGTTAAACTTTACTA 2047
| ||| | | | | |||||||||||||| |||||||||||||||||||||||||
Sbjct 2174 --G-TAA----T--A-T-T-GTCTGATGTAAGTTAATTAACCGTTAGTTAAACTTTACTA 2221
Query 2048 GTAATTAAAAAG-T-GTTC-TTTGGGCTGTTTCTCTGAAGCTGATAAATATGGGCTTTAT 2104
| | |||||| | | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2222 -T--T-AAAAAGGTCGGTCCTTTGGGCTGTTTCTCTGAAGCTGATAAATATGGGCTTTAT 2277
Query 2105 ATTAAA--CAGGCCCATGAAGTTGAATA 2130
|||||| |||||||||||| |||||||
Sbjct 2278 ATTAAATACAGGCCCATGAATTTGAATA 2305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80484687685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5