BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01840.1

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918770 jgi|Araly1|918770|scaffold_100051.1                        584    3e-166


> Ahg918770 jgi|Araly1|918770|scaffold_100051.1
Length=470

 Score =  584 bits (316),  Expect = 3e-166
 Identities = 443/498 (89%), Gaps = 34/498 (7%)
 Strand=Plus/Plus

Query  95   agagTGTGTGTGTAAGAATATGGCAAGTATAGAGCAAGTAGCTGAGCTGATATCATCGCT  154
            |||| | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct  2    AGAGAGAGTGTGTAAGAACATGGCAAGTGTAGAGCAAGTAGCTGAGCTGATATCATCGCT  61

Query  155  GGAGCAAGCAACTTTAATGGCACAGCAAATCGGAACCACCGTTGGAC-AGAACCAGTTAC  213
            ||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||
Sbjct  62   GGAGCAAGCAACTTTAATGGCGCAGCAAATGGGAACCACCGT-GGACCAGAACCAGTTAC  120

Query  214  TCCAAATTTCCTCTCTCCGCATAGCCCACCAACGCCTCTCTGCCTTCCTAGCCTCCATAC  273
            ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct  121  TCCAAATCTCCTCTCTCCGCATAGCCCACCAACGCCTATCTGCCTTCCTGGCCTCCATCC  180

Query  274  CAACGGCGGAAGCTGAGAAATCTTTCTCCTCCGTGGAGCCGATGCAATTAGGAGAAGAAG  333
            || |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  181  CATCGGCGGAAGGGGAGAAATCTTTCTCCTCCGTCGAGCCGATGCAATTAGGAGAAGAAG  240

Query  334  AGAAAGGAGAGGCTGAGCCTGCTGAAGAGGAGAGATACTCGGCGATAGAGAAGGTGGAGG  393
            |||| || |||    ||   |||||||||||||||||||||||||| |||||||||||||
Sbjct  241  AGAA-GG-GAG----AG---GCTGAAGAGGAGAGATACTCGGCGATGGAGAAGGTGGAGG  291

Query  394  AGAAGATGAGAGAGTGTTTCATTAGAAACAAGAGACTCAAGCGGCCACTGTCTCCCTCGT  453
            ||||||||||||| || ||||||||||||||||||||||||||||||||||||||   ||
Sbjct  292  AGAAGATGAGAGACTGCTTCATTAGAAACAAGAGACTCAAGCGGCCACTGTCTCC---GT  348

Query  454  CGGCTGTGGTGGAGACTTCGGCGACGGAAGAGAGGAGTGGCCGTGATTATGGGTTTGATT  513
            ||  |          |   |   |||||||||||||||||||||||||||||||||||||
Sbjct  349  CG--T----------C---G---ACGGAAGAGAGGAGTGGCCGTGATTATGGGTTTGATT  390

Query  514  CCGACCCACATGCCACCAAGTTGAGAGCTTTGGATCTTATCTACCAGTTTCATGCTTGAT  573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  391  CCGACCCACATGCCACCAAGTTGAGAGCTTTGGATCTTATCTACCAGTTTCATGGATGAT  450

Query  574  TTTAT-AAATTGTAGATT  590
            | ||  ||||||| ||||
Sbjct  451  TGTAACAAATTGT-GATT  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30383964849


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5