BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01880.1
Length=1996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311256 jgi|Araly1|311256|fgenesh1_pm.C_scaffold_1000036 1459 0.0
> Ahg311256 jgi|Araly1|311256|fgenesh1_pm.C_scaffold_1000036
Length=1773
Score = 1459 bits (790), Expect = 0.0
Identities = 889/938 (95%), Gaps = 2/938 (0%)
Strand=Plus/Plus
Query 119 ATGGGTGTGGGAGGCAATTTCTGGGATTTGCTGAGACCATATGCTCAGCAACAAGGCTTT 178
||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||
Sbjct 1 ATGGGTGTGGGAGGCAATTTCTGGGATTTGCTGAGGCCTTATGCTCAACAACAAGGGTTT 60
Query 179 GATTTTCTCAGAAACAAACGAGTCGCTGTTGATCTCTCCTTCTGGATCGTTCAGCATGAA 238
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTATCTCAGAAACAAACGCGTCGCTGTTGATCTCTCCTTCTGGATCGTTCAGCATGAA 120
Query 239 ACCGCTGTTAAGGGTTTCGTCCTTAAACCTCACCTCCGACTCACTTTCTTCCGTACTATC 298
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 ACCGCTGTTAAGGGTTTTGTCCTTAAACCTCACCTCAGACTCACTTTCTTCCGTACTATC 180
Query 299 AACCTCTTCTCAAAGTTTGGAGCGTACCCGGTTTTTGTGGTTGATGGAACACCATCACCT 358
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 181 AACCTCTTCTCAAAGTTTGGAGCGTATCCAGTTTTTGTGGTTGATGGAACACCTTCACCT 240
Query 359 TTGAAATCTCAGGCGAGAATCTCCAGGTTTTTCCGTTCTTCTGGAATTGATACTTGTAAT 418
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CTAAAATCTCAGGCGAGAATCTCCAGGTTTTTCCGGTCTTCTGGAATTGATACTTGTAAT 300
Query 419 CTACCTGTGATTAAAGATGGTGTCTCGGTTGAGAGAAACAAGCTGTTTTCTGAATGGGTT 478
|| ||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||
Sbjct 301 CTGCCTGTGATTAAAGATGGCGTCTCCGTTGAGAGAAATAAGCTGTTTTGTGAATGGGTT 360
Query 479 AGGGAATGTGTGGAGCTACTCGAATTGCTCGGTATTCCGGTGCTGAAAGCTAATGGTGAG 538
| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 361 AAGGAATGTGTGGAGCTACTCGAATTGCTCAGTATTCCGGTGCTGAAAGCAAATGGTGAG 420
Query 539 GCTGAAGCTCTCTGTGCACAGTTAAACAGCCAAGGTTTTGTGGATGCTTGCATTACTCCT 598
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 421 GCTGAAGCTCTCTGTGCACAGTTAAACAGCGAAGGTTATGTGGATGCTTGCATTACTCCT 480
Query 599 GATAGTGATGCTTTCCTTTTTGGTGCTATGTGCGTGATCAAAGACATCAAGCCTAATTCA 658
||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 481 GATAGTGATGCTTTCCTATTTGGTGCTAAGTGCGTGATCAAAGATATCAAGCCTAATTCA 540
Query 659 AGAGAACCTTTTGAATGCTACCATATGTCACATATCGAGTCTGGCCTCGGTTTGAAGCGG 718
||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||
Sbjct 541 AGAGAGCCTTTTGAATGCTACCATATGTCAGATATTGAGTCTGGCCTTGGTCTGAAGCGG 600
Query 719 AAACACTTGATTGCTATTTCTCTATTGGTGGGAAACGATTATGATTCAGGCGGTGTTCTT 778
||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 601 AAACACTTGATAGCTATTTCTCTATTGGTTGGAAATGACTATGATTCAGGCGGTGTTCTT 660
Query 779 GGGATTGGTGTGGATAAAGCACTGCGCATTGTTCGTGAGTTTTCTGAAGACCAAG-TACT 837
||||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||
Sbjct 661 GGGATTGGTGTGGATAAAGCACTCCGCATTGTTCGTGAGTTTTCTGAAGA-CGAGATACT 719
Query 838 TGAAAGACTACAGGACATTGGAAATGGGTTGCAACCTGCAGTTCCTGGTGGAATCAAATC 897
|||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct 720 TGAAAGACTACAGGACATTGGAAAAGGGTTGAAACCTACAGTTCCTGGTGGAATCAAATC 779
Query 898 CGGGGATGATGGTGAAGAATTCCGCTCAGAGATGaaaaaaaGATCTCCTCACTGTTCCCG 957
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGTGGATGATGGTGAAGAATTCCGCTCAGAGATGAAAAAAAGATCTCCTCACTGTTCCCG 839
Query 958 TTGTGGACACCTGGGCAGCAAGAGAACTCATTTTAAGTCCTCTTGTGAGCACTGCGGTTG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 840 TTGTGGACACCTGGGCAGCAAGAGAACTCATTTTAAGTCCTCTTGTGAGCATTGTGGTTG 899
Query 1018 TGATAGTGGTTGCATTAAAAAACCATTAGGGTTTAGAT 1055
|||||||||||| ||||| |||||||||||||||||||
Sbjct 900 TGATAGTGGTTGTATTAAGAAACCATTAGGGTTTAGAT 937
Score = 1280 bits (693), Expect = 0.0
Identities = 799/847 (94%), Gaps = 19/847 (2%)
Strand=Plus/Plus
Query 1084 AGATTTAAGGGAACAAAAGAAAACCAATGATTGGTGGATCAAAGTCTGCGATAAGATTGC 1143
|||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 934 AGATTTAAAGGAACAGAAGAAAACC-ATGATTGGTGGATCAAAGTCTGTGATAAGATTGC 992
Query 1144 TCTAGCGCCAGAGTTTCCCAACAGAAAGATTATTGAACTTTATCTATCCGATGGTTTGAT 1203
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 993 TCTAGCGCCAGAATTTCCCAACAGAAAGATTATTGAACTCTATCTATCCGATGGTTTGAC 1052
Query 1204 GACAGGAGATGGATCGTCAATGTCTTGGGGAACTCCTGATACTGGAATGCTAGTGGATCT 1263
| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GGCAGAAGATGGCTCGTCAATGTCTTGGGGAACTCCTGATACTGGAATGCTAGTGGATCT 1112
Query 1264 CATGGTTTTCAAACTGCACTGGGACCCATCTTATGTTAGAAAAATGTTGCTTCCGATGCT 1323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1113 CATGGTTTTCAAACTGCACTGGGACCCATCTTATGTTAGAAAAATGTTGCTTCCGATGTT 1172
Query 1324 GTCGACCATTTATCTGAGAGAAAAGGCAAGAAACAACACAGGATACGCTTTGTTGTGTGA 1383
||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 1173 GTCGACCATTTATCTAAGAGAAAAGGCAAGAAACAGCACAGGAAACGCTTTGTTATGTGA 1232
Query 1384 TCAATACGAATTTCATTCAATCAAGTGCATAAAAACTAGATATGGGCATCAGTCCTTTGT 1443
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1233 TCAATACGAATTTCATTCAATCAAGTGCATAAAAACTAGATATGGGCATCAGTCTTTTGT 1292
Query 1444 AATAAGGTGGAGAAAACCCAAATCTACAAGTGGTTATAGTCATAGTCACAGCGAGCCAGA 1503
||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||
Sbjct 1293 GATAAGGTGGAGAAAACCCATATCTATAAGTGGTTATAGTCACAGTCAAAGCGAGCCAGA 1352
Query 1504 AGAATCAATTGTTGTATTGGAAGAAGAA--G----AAGA-G-----TCTGTTGATCCGTT 1551
|||||||||||||||||||||||||||| | |||| | ||||||||||||||
Sbjct 1353 AGAATCAATTGTTGTATTGGAAGAAGAACTGGTGGAAGAAGAAGAGTCTGTTGATCCGTT 1412
Query 1552 GGATGGTTTAAATGAACCTCAGGTGCAAAATGATAATGGTGACTGCTTCTTGCTAACTGA 1611
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 AGATGGTTTAAATGAACCTCAGGTGCAAAATGATAATGGTGACTGCTTCTTGCTAACTGA 1472
Query 1612 TGAATGCATAGGACTTGTTCAGTCTGCTTTCCCTGATGAAACAGAGCATTTTCTACATGA 1671
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 TGAATGCATAGGACTTGTTGAGTCTGCTTTCCCTGATGAAACAGAGCATTTTCTACATGA 1532
Query 1672 GAAGAAACTGAGAGAGTCGAAAAAGAAGAATGTTTCTGAAGAAGAAACAGCAACACCAAG 1731
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1533 GAAGAAACTGAGAGAGTCGAAAAAGAAGAATGTTTCTGAAGAA-A--CAGCAACACCAAG 1589
Query 1732 AGCAACAACAATGGGTGTACAAAGAAGCATTACCGATTTCTACCGTTCAGCGAAGAAAGC 1791
| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1590 ACCAACAACAATGGGTGTACAAAGAAGCATTACCGATTTCTACCGTTCAGCGAA-A--GC 1646
Query 1792 AGCAGCAGGTCAAAGTATAGAGACAGGCGGGAGTTCAAAAGCTTCTGCGGAAAAGAAGAG 1851
|||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1647 AGCACCAGGTCAAAGTATAGAGACTGGCGGGAGTTCAAGAGCTTCTGCGGAAAAGAAGAG 1706
Query 1852 ACAGGCAACTTCTACTAGTAGTAGTAACCTTACAAAGTCGGTCAGGCGTCGTCTCTTGTT 1911
||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 1707 ACAGGCAACTTCTACTAGTAGTAGTAACCTTTCAAAGTCTGTAAGGCGTCGTCTCTTGTT 1766
Query 1912 TGGATAG 1918
|||||||
Sbjct 1767 TGGATAG 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75037782650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5