BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01910.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470088 jgi|Araly1|470088|fgenesh2_kg.1__42__AT1G01910.4 1823 0.0
> Ahg470088 jgi|Araly1|470088|fgenesh2_kg.1__42__AT1G01910.4
Length=1346
Score = 1823 bits (987), Expect = 0.0
Identities = 1060/1096 (97%), Gaps = 2/1096 (0%)
Strand=Plus/Plus
Query 67 TAGCAATGGCGGCGGATTTGCCGGAGGCGACAGTACAGAACATTCTGGACCAAGAGTCTC 126
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 1 TAGCAATGGCGGCGGATTTGCCGGAGGCCACGGTGCAGAACATTCTGGACCAAGAGTCTC 60
Query 127 TTAAATGGGTTTTCGTCGGAGGTAAAGGAGGTGTTGGGAAGACGACATGCAGTTCAATTC 186
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 61 TTAAATGGGTTTTCGTCGGAGGGAAAGGAGGTGTGGGGAAGACGACATGCAGTTCAATTC 120
Query 187 TCGCAATTTGTCTCGCCAGTGTTCGATCCTCCGTTCTCATCATCTCCACCGATCCTGCTC 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGCAATTTGTCTCGCCAGTGTTCGATCCTCCGTTCTCATCATCTCCACCGATCCTGCTC 180
Query 247 ACAATCTTAGTGATGCCTTTCAGCAACGCTTCACTAAATCTCCCACTTTGGTTCAAGGTT 306
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 ACAATCTTAGTGATGCCTTTCAGCAACGCTTCACTAAATCCCCCACTTTGGTTCAAGGTT 240
Query 307 TCTCTAATCTCTTTGCCATGGAGGTAGATCCTACCGTTGAAACTGATGACATGGCTGGTA 366
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 241 TCTCTAATCTCTTTGCCATGGAGGTGGATCCTACCGTTGAAACTGATGACCTGGCTGGTG 300
Query 367 CAGACGGGATGGATGGTTTATTCTCTGATTTGGCAAATGCGATTCCTGGAATCGATGAGG 426
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 CAGACGGGATGGATGGTTTATTCTCTGATTTGGCTAATGCGATTCCTGGAATCGATGAGG 360
Query 427 CTATGAGTTTTGCTGAGATGTTGAAGTTGGTGCAAACAATGGATTATGCTACTATTGTGT 486
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCATGAGTTTTGCTGAGATGTTGAAGTTGGTGCAAACAATGGATTATGCTACTATTGTGT 420
Query 487 TTGACACTGCTCCTACTGGACATACTCTCCGCCTGTTACAGTTTCCGGCCACACTAGAAA 546
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 TTGACACAGCTCCAACTGGACATACTCTCCGCCTGTTACAGTTTCCAGCCACACTAGAAA 480
Query 547 AGGGACTTTCGAAGTTGATGTCATTGAAGAGTAGATTTGGTGGCTTGATGACTCAGATGA 606
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGGACTTTCCAAGTTGATGTCATTGAAGAGTAGATTTGGTGGCTTGATGACTCAGATGA 540
Query 607 GCCGTATGTTTGGCATGGAGGATGAGTTCGGAGAGGATGCTTTGCTGGGAAGACTTGAGG 666
|||||||||||||||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct 541 GCCGTATGTTTGGCATAGAGGATGAGTTTGGAGAGGATGCTCTGTTGGGAAGACTTGAGG 600
Query 667 GCTTGAAAGATGTGATTGAGCAAGTAAATCGGCAATTCAAAGACCCGGATATGACTACGT 726
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATTGAAAGATGTGATTGAGCAAGTAAATCGGCAATTCAAAGACCCGGATATGACTACGT 660
Query 727 TCGTTTGTGTCTGCATCCCCGAGTTCTTGTCTCTCTATGAAACAGAGAGACTTGTTCAGG 786
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCGTCTGTGTCTGCATCCCCGAGTTCTTGTCTCTCTATGAAACAGAGAGACTTGTTCAGG 720
Query 787 AACTCGCCAAGTTTGAGATTGACACGCATAACATTATCATCAACCAAGTACTATACGACG 846
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 721 AACTTGCCAAGTTTGAGATCGACACGCATAACATTATCATCAACCAAGTACTATACGATG 780
Query 847 ACGAAGATGTGGAGTCCAAGTTGCTCAGAGCAAGGATGCGGATGCAACAGAAGTATCTTG 906
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACGAAGATGTGGAATCCAAGTTGCTCAGAGCAAGGATGCGGATGCAACAGAAGTATCTTG 840
Query 907 ATCAGTTTTATATGCTATACGATGACTTTAATATCACAAAGCTTCCTCTGCTTCCGGAAG 966
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 841 ATCAGTTTTATATGCTATACGATGACTTCAATATCACAAAACTTCCTCTGCTTCCGGAAG 900
Query 967 AGGTGACAGGGGTTGAAGCCTTAAAGGCGTTTTCACATAAGTTCTTGACGCCGTACCATC 1026
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 901 AGGTAACAGGGGTTGAAGCCTTAAAGGCGTTTTCACATAAGTTCTTGACACCGTACCATC 960
Query 1027 CTACCACTAGCAGGAGCAATGTAGAGGAGCTGGAGAGGAAAGTACACACATTGCGTTTGC 1086
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 CTACCACTAGCAGAAGCAATGTAGAGGAGCTGGAGCGGAAAGTACACACATTGCGTTTGC 1020
Query 1087 AGTTAAAAACAGCTGAAGAAGAACTCGAACGGGTCAAGAGTGGCTAAA--GATAAGGCTC 1144
|||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1021 AGTTGAAAACAGCTGAAGAAGAACTCGAACGGGTCAAGAGTGGGTAAAAAGATAAGGCTA 1080
Query 1145 TGTTCTTCCCTTTAAT 1160
||||||||||||||||
Sbjct 1081 TGTTCTTCCCTTTAAT 1096
Score = 235 bits (127), Expect = 6e-61
Identities = 180/203 (89%), Gaps = 13/203 (6%)
Strand=Plus/Plus
Query 1162 TTCTTCATCTAGCAACAACTCTTTATAGGACAGGAAAGAAGATCAAGCAGAATCTTCTTT 1221
||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct 1132 TTCCTCATCTAGCAACAACTCTTTATAGGACAGGAAACATGATCAAGCAGAATCATCTTT 1191
Query 1222 TGCGTTGTTTTATTGTTATGCATTGGATTTGTTTTTATATTTGTAATAATCATGACTACA 1281
|||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 1192 TGCGTTGTTTTATTGTTATGCATTGGATTTATTTTTC-ATTTGTAATAATCAAGACTACA 1250
Query 1282 TA--GACTCATATCTACCAAGAAATCGTTGTTTTACGACTTAATCAGCTTTTTATATATT 1339
|| || || |||||||||||||||||| ||||| ||||||||||| | |||||
Sbjct 1251 TATAGAATC-TATCTACCAAGAAATCGT-------CGACTAAATCAGCTTTT-A-ATATT 1300
Query 1340 AAGTTGAAGGGTATCTGTGACAA 1362
|||||||||||| ||||||||||
Sbjct 1301 AAGTTGAAGGGTCTCTGTGACAA 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5