BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01920.1
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470083 jgi|Araly1|470083|fgenesh2_kg.1__37__AT1G01920.2 1461 0.0
> Ahg470083 jgi|Araly1|470083|fgenesh2_kg.1__37__AT1G01920.2
Length=1775
Score = 1461 bits (791), Expect = 0.0
Identities = 945/1015 (93%), Gaps = 28/1015 (3%)
Strand=Plus/Plus
Query 1 GATCTTCGCCGGAGGATAT---GGCGATTTC---AGAAGAAGAAGCCAAACTCGAAAGGT 54
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 35 GATCTTCGTCGGAGGATATGGCGGCGATTTCAGAAGAAGAAGAAGCCAAACTCGAAAGGT 94
Query 55 TCCTAGATTGGCTTCAGGTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTG 114
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 95 TCCTAGATTGGCTTCAGGTGAATGGAGCTGAATTAAGAGGCTGCAACATCAAATATTCTG 154
Query 115 ACTCCCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATGAAGTTT 174
|||||| |||||||||||||||||||||||||| || | || |||||||||| ||||
Sbjct 155 ACTCCCGAAAAGGATTTGGCATATTCGCTTCCA-CT-GA---AA-CTTCCGATGATGTTT 208
Query 175 TGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTCTTCAGGACCCTCTCC 234
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 TGCTTGTTGTTCCACTTGATCTGGCCATTACCCCTATGAGAGTTCTTCAGGACCCTCTCC 268
Query 235 TGGGCCCTGAGTGTCAGAAAATGTTCGAACAAGGACAAGTTGATGACCGCTTTCTCATGA 294
||||||||||||| |||||||||||| || | |||||||||||||||||||||||||| |
Sbjct 269 TGGGCCCTGAGTGCCAGAAAATGTTCCAAGACGGACAAGTTGATGACCGCTTTCTCATCA 328
Query 295 TTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCGTATCTTGATA 354
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TTTTATTCCTCACTTTCGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCGTATCTTGATA 388
Query 355 TGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGATGATGACATCCTTGAGCTAA 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 389 TGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGATGATGACATCCTTGAGCTCA 448
Query 415 AAGGGACTAACTTGTATCACGCAACCGAGTTACAGAAGAAGAAGTTGCTCTCGCTTTACC 474
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 449 ACGGGACTAACTTGTATCACGCAACCGAGTTACAGAAGAAGAATTTGCTGTCGCTTTACC 508
Query 475 ATGACAAGGTGGAGGTCCTGGTGACAAAGCTTCTTATTTTGGATGGCGATTCCGAAAGCA 534
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 509 ATGACAAGGTGGAGGTCCTGGTGAAAAACCTTCTTATTTTGGATGGCGATTCCCAAAGCA 568
Query 535 AGGTCTCCTTTGAACACTTCCTCTGGGCAAACTCTGTATTCTGGAGTCGCGCCTTGAATA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 AGGTCTCCTTTGAACACTTCCTCTGGGCAAACTCTGTATTCTGGAGTCGCGCCTTGAATA 628
Query 595 TTCCTCTTCCACATTCTTTCGTGTTTCCACAAAGCCAAGATGATACCGGGGAATGCACAT 654
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct 629 TTCCTCTTCCACATTCTTTCGTGTTTCCACAAAGCCAGGATGATATCGGGGAATGCCCAT 688
Query 655 CAACAAGTGAGTCCCCTGAAACGGCTCCAGTTAATTCTAATGAGGAAAAAGGCAAGTCAT 714
|||||||| | || ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 689 CAACAAGTCATTCACCTGAAACGGCTCCAGTTAATTCTAATGAGGAAAAAGGCAA-TC-T 746
Query 715 TAACGTCGGCTCAACCTGCGCCATC-TGTAGGATCCGGAGATACAATATGGGTTGAGGGG 773
| | | | ||| | | | || || || ||||||||||||||||||||||||||||
Sbjct 747 GG-CAT-G--T-AAC-TACAACTTCATG-AG-ATCCGGAGATACAATATGGGTTGAGGGG 798
Query 774 CTTGTTCCTGGCATTGACTTTTGCAACCATGATTTGAAGCCTGTGGCGACTTGGGAAGTT 833
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 799 CTTGTTCCTGGCATTGACTTTTGCAACCATGATTTGAAACCTATGGCGACTTGGGAAGTT 858
Query 834 GATGGGATCGGATCAGTATCTAGGGTTCCTTTCTCCATGTACCTTCTCTCTGT--T-GCT 890
||||||| ||||||||| |||||||||||||||||||||||||||||||| | | |||
Sbjct 859 GATGGGACCGGATCAGTGTCTAGGGTTCCTTTCTCCATGTACCTTCTCTCCGCAGTCGCT 918
Query 891 CAACGTCCT-ATCCCAAAGAAGGAGATCTCGATCAGTTATGGTAACAAAGGAAATGAGGA 949
||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CAACGTC-TGATCCCAAACAAGGAGATCTCGATCAGTTATGGTAACAAAGGAAATGAGGA 977
Query 950 GCTTCTTTACCTGTATGGCTTTGTGATAGATAACAACCCAGATGATTATCTCATG 1004
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 978 GCTTCTTTACCTGTATGGCTTTGTGATAGATAACAATCCAGATGATTATCTCATG 1032
Score = 1112 bits (602), Expect = 0.0
Identities = 658/685 (96%), Gaps = 3/685 (0%)
Strand=Plus/Plus
Query 1063 TTAT-TCA-GGTACATTATCCTGTTGAGGCAATTCCGAGTATCCCTTTTTCTGATTCCAA 1120
|||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1023 TTATCTCATGGTACATTATCCTGTTGAGGCGATTCCGAGTATCCCATTTTCTGATTCCAA 1082
Query 1121 GGGGCAGCTGCTTGAAGCTCAGAATGCACAACTCCGGTGTCTCTTGCCAAAATCGGTCCT 1180
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1083 GGGGCAGCTGCTTGAAGCTCAGAATGCTCAACTCCGGTGTCTCTTACCAAAATCGGTCCT 1142
Query 1181 AAATCATGGGTTTTTCCCACGAACCACATCAGTAATTAGAGAAAGTGATGAGAAGGAAAC 1240
|||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 1143 AAATCATGGGTTTTTCCCACAAACCACATCAACAATTAGAGAAAGTGATGAGAAAGAAAC 1202
Query 1241 AGTGAGATCCTGTAATTTCAGTTGGTCTGGGAAGCGTAAGATGCCCACATATATGAACAA 1300
|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct 1203 AGAGAGATCCTGTAATTTCAGTTGGTCTGGGCAGCGTAAGATGCCCTCATATATGAATAA 1262
Query 1301 ACTAGTTTTCCCAGAAGATTTTATGACTGGCTTAAGGACCATTGCAATGCAAGAAGAAGA 1360
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1263 ACTAGTTTTCCGAGAAGATTTTATGACTGGCTTAAGGACCATTGCCATGCAAGAAGAAGA 1322
Query 1361 GATTTACAAGGTCTCAGCTATGCTTGAAGAGCTTGTTGAGTCAAGACAAGGCGAGCAACC 1420
|||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1323 GATTAACAAGGTCTCAGCTATGCTTGAAGAGCTTGTAGAGTCAAGACCAGGCGAGCAACC 1382
Query 1421 TTCTGAAACTGAGGTCAGGATGGCAGTATGGGAAGCATGTGGGGATTCTGGAGCTTTGCA 1480
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1383 TTCTGAAACTGAGGTCAGGATGGCGGTATGGGAAGCATGCGGGGATTCTGGAGCTTTGCA 1442
Query 1481 GTTACTTGTGGATCTCCTTAATTCAAAGATGATGAAGCTGGAAGAGAATTCTGGCACTGA 1540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1443 GTTACTTGTGGATCTCCTTAATGCAAAGATGATGAAGCTGGAAGAGAATTCTGGCACTGA 1502
Query 1541 AGAACAAGATGCTAGGCTCCTTGAGGAGGCGTGCGTCTTAGAGAGCCATGAAGAATCGAG 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1503 AGAACAAGATGCTAGGCTCCTTGAGGAGGCGTGCGTCTTAGAGAGCCATGAAGAAGCGAG 1562
Query 1601 GGACTTGGATGGGAGAAGGATGAGCAGAAACAAGTGGTCAAGTGTAGTGTACCGTAGAGG 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 GGACTTGGATGGGAGAAGGATGAGCAGAAACAAGTGGTCAAGTGTAGTGTACCGTAGAGG 1622
Query 1661 ACAGAAGCAGCTCACAAGACTGTTGTTGAAGGAGGCAGAGCATGCCCTTCACTTAGCTCT 1720
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1623 ACAGAAGCAGCTCACAAGACTGTTCTTGAAGGAGGCAGAGTATGCCCTTCACTTAGCTCT 1682
Query 1721 CTCCTCTGACCATTGACTGATATCT 1745
|||||||||| ||||||| ||||||
Sbjct 1683 CTCCTCTGACTATTGACT-ATATCT 1706
Score = 102 bits (55), Expect = 9e-21
Identities = 71/78 (91%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 1777 ATATCCATTTCAAAGGCTAAATAAGCAAATTGTGTGATATAACAATTATTAGTGTGTGGC 1836
||||| |||||||| |||||||||| |||| || | |||||||||||||||||||||||
Sbjct 1701 ATATCTATTTCAAATGCTAAATAAG-TAATTATG-G-TATAACAATTATTAGTGTGTGGC 1757
Query 1837 ACCAAATTAACGGTCTAT 1854
||||||||||||||||||
Sbjct 1758 ACCAAATTAACGGTCTAT 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70352682515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5