BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01930.1
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470081 jgi|Araly1|470081|fgenesh2_kg.1__35__AT1G01930.1 2828 0.0
> Ahg470081 jgi|Araly1|470081|fgenesh2_kg.1__35__AT1G01930.1
Length=1930
Score = 2828 bits (1531), Expect = 0.0
Identities = 1816/1946 (93%), Gaps = 49/1946 (3%)
Strand=Plus/Plus
Query 33 TCCGTCCAATTCATAATTAATGGCGACCACCGGCGCGGCGGCCACCACCGAGATTGGTAA 92
||| |||||||||| ||| ||||||||||||||||| | | |||||| ||||||
Sbjct 1 TCCATCCAATTCATGATTCATGGCGACCACCGGCGC--C-G------CCGAGACTGGTAA 51
Query 93 TC-CAGAATATAAACAGCCTCGATCGATATTTGACTTGACGGCGGATTTCTTTGACTCGT 151
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 52 -CGCAGAATATAAACAGCCTCGATCGATATTTGACTTGACGGCAGATTTCTTTGACTCGT 110
Query 152 GTCGGTTGTCGAATCCTTCG-GAGACTCAATCGGC--A-TT-C-----GGACCACCCAAA 201
||||| ||||| |||||| | ||||||||||| || | || | ||||||||||||
Sbjct 111 GTCGGCTGTCGTATCCTT-GTGAGACTCAATCCGCATATTTCCGGTTAGGACCACCCAAA 169
Query 202 ACTTTCGATCCAGAGGAGGCGGAGGAGGATAAGAGTTCCAAGGACGGCGTGATTTTGGAC 261
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 170 ACTTTCGATCCAGAGGAGGC---GGAGGATAAGAGTTCCAAAGACGGCGTGATTTTGGAC 226
Query 262 AGATGGACCTGTAATACTTGTAAAATTGAGTTCCTGTCTCTTCAAGATCAACGCTACCAC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 AGATGGACCTGTAATACTTGTAAAATTGAGTTCCTGTCTCTTCAAGATCAACGCTACCAC 286
Query 322 TTCAAGTCCGATATTCATCGCCTTAACATCAAGCTGAGTGTTGCTGGCAAGGCTATATTA 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 287 TTCAAGTCCGATATTCATCGCCTTAACATCAAGCTGAGTGTTGCTGGCAAGGCTATTTTG 346
Query 382 AAAGAGGAAGATGTTGATGAGTTGACATCTGAGTCGGTCCAAGACTATGACGTGTCTAGC 441
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AAAGAGGAAGACGTTGATGAGTTGACATCTGAGTCGGTCCAAGACTATGACGTGTCTAGT 406
Query 442 ATATCAGGTTCAGAGGACGAAGCTGAGACTAG-ACCACCCTCTTTCCACTTTGATGCTCA 500
|||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 407 ATATCAGGATCAGAGGACGAAGCTGAGACTAGTAGG-CCCTCTTTCCACTTTGATGCTCA 465
Query 501 AAAGGGTATTGATAAAAAGAAACTATTTTTCCGTCTTCAAAGTGGTGACAAAGTTTCTAT 560
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AAAGGGTATCGATAAAAAGAAACTATTTTTCCGTCTTCAAAGTGGTGACAAAGTTTCTAT 525
Query 561 CTGGAAATGCTTAATCATGGACGACGCTGAAAGTGTTTCGTTCGAGAATGACAGAGGAGT 620
|||||| ||||||||||||||||||| |||| |||||| ||||| ||||||||||||||
Sbjct 526 ATGGAAAAGCTTAATCATGGACGACGCCGAAACTGTTTCATTCGACAATGACAGAGGAGT 585
Query 621 TTCTGTTGACTGTTGTGGTAGCTTGGTCGAGAATGAAGTTACTGAGAGGTTGAGAAATTT 680
|||||| || | |||||||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 586 TTCTGTCGATTTTTGTGGTAGCTTGGCCGAGAATGAAGTGACTCAGAGGTTGAGAAATTT 645
Query 681 GATTCGAGAGAATA-AGGATGATAGGCAAATGCGTGTCGTGTTGCTTGCAAGTGGTGGCC 739
|||||||||||||| || |||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 646 GATTCGAGAGAATACAG-ATGATAGGAAAATGTGTGTCGTGTTGCTTGCTAGTGGTGGCC 704
Query 740 ACTTTGCCGGTACTGTCTTTAATGGAAAGTCGGTTGTGGCTCATAAGACATTCCACAGAT 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ACTTTGCCGGTACTGTCTTTAATGGAAAGTCGGTTGTGGCTCATAAGACATTCCACAGAT 764
Query 800 ATGTTGTAAGAGCCAAGGCTGGTAAAAAGCAGTCCACAAAAGATGCAAGCGGGAGAAGTA 859
||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||
Sbjct 765 ATGTTGTAAGAGCCAAGGCTGGTAAAAAGCAGTCCACAAAAGATGGAAGCGGCAGGAGTA 824
Query 860 TACACTCTGCCGGAGCCTCACTTCGTCGTTACAATGAACTTGCTTTAAAAAAGGATATTC 919
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 825 TACACTCTGCCGGAGCTTCACTTCGTCGCTACAATGAACTTGCTTTAAAAAAGGATATTC 884
Query 920 AAGAGCTACTTGCTAGCTGGAAACCTTATTTTGATGGTGCTGCTTGTGTTTTTGTCCATG 979
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 885 AAGAGCTACTTGCTAGCTGGAAGCCTTATTTTGATGGTGCTGCTTGTGTTTTTGTCCATG 944
Query 980 CTCCCTCAAGCAGTAGGCAATTACTTTTCAATGGAGGCAAACCGTACTTTAGCAGCCAAA 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 CTCCCTCAAGCAGTAGGCAATTACTTTTCAATGGAGGCAAACCGTACTTTAGCAGCCAAA 1004
Query 1040 ACTGCGCTGTACGAAACGTTCCATTTACGATCCGTCGGCCAACCTTCAAGGAATCACAGC 1099
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1005 ACTGTGCTGTACGAAACGTTCCATTTACGATCCGGCGGCCAACCTTCAAGGAATCACAGC 1064
Query 1100 GTATATATAATCAGTTGACTCAGATTGCACATGTAACTGAGGAGATTTTTGTTAATCGAC 1159
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1065 GTATATATAATCAGTTGACTCAGATTGCACATGTAACTGAGGAGATTTTTGTTAATTTAC 1124
Query 1160 CAGAAGTCACCAAAGCTAATACAGTGGTGCAGACCCACAATGAGGATTCTGGCAAAACCT 1219
|||||| |||||||||||||| ||||||||||||||| || ||||||||| || ||||||
Sbjct 1125 CAGAAGACACCAAAGCTAATAAAGTGGTGCAGACCCATAACGAGGATTCTAGCGAAACCT 1184
Query 1220 CAAGAAAGGAAGAGCCCGATGAAACTTCTTCTAGCAACATAATCTTAGAGGAACCAAATC 1279
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1185 CAAGAAAGGAAGAGCCCGATGAAACTTCGTCTCCCAACATAATCTTAGAGGAACCAAATC 1244
Query 1280 GTATAGAAGAGGATATCGAGGATGGAGTTACTGGTACGTCAACTGCCTTACATGAAGCTG 1339
|||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1245 GTATAGAAGAGGATCTCGGGGATGGAGTTACTGGTACGTCAACTCCCTTACATGAAGCTG 1304
Query 1340 CCAAATCGGGTGATTGTGAAAGAGTTATGGAGTTCTTGGAGGAGGGTATGGATCCTTGTG 1399
||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1305 CCAAATCTGGTGATTGTGAAAGAGTTCTGGAGTTCTTGGAGGAGGGTATGGACCCTTGTG 1364
Query 1400 CTAAGGATGAAAGAGGCAGAACGCCATACATGCTTGCAAATGAGAAGGAAGTGAGAAACA 1459
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1365 CTAAGGATGAAAGAGGCAGAACCCCATACATGCTAGCAAATGAGAAGGAAGTAAGAAACA 1424
Query 1460 CTTTCAGACGGTTTATGGCGTTAAACCTTGAAAAATGGAATTGGCATGATGCTAAAGTAC 1519
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1425 CTTTCAGACGGTTCATGGCGTCAAACCTTGAAAAATGGAATTGGCATGATGCTAAAGTAC 1484
Query 1520 CCAGCCCGCTCACAAAAGAGATGGAGGAATCTCAAGCTGCCAAGCAGGCAGAAAAAGACG 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 CCAGCCCGCTCACAAAAGAGATGGAGGAATCTCAAGCTGCCAAGCAGGCAGAAAAAGACG 1544
Query 1580 CCAAGCAGAAAGCAAGAACAAAGGAGTTGAAGAAACTACGCAAAGCCCGAGAAAAGAAGG 1639
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1545 CCAAGCAGAAAGCAAGAGCAAAAGAGTTGAAGAAACTACGCAAAGCCCGAGAAAAGAAGG 1604
Query 1640 CTCAGGCCGAAGCTGCGCAGGCGGAGAAGGAGAAGCCAATTTCTAAAGTGGAGGAAGTGA 1699
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1605 CTCAAGCCGAAGCTGCGCAGGCTGAGAAGGAGAAGCCAATCTCTAAAGTGGAGGAAGTGA 1664
Query 1700 GGAGAGCAATGGCAGCACAGAGGGAAAAGAGAGCAGCCGCTGCAGAAAGACGGATGGCAT 1759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 GGAGAGCAATGGCAGCACAGAGGGAAAAGAGAGCAGCCGCTGCAGAAAGACGGATGGCAT 1724
Query 1760 CACTTAACATTCAAAGCAGTTCAAGCACAAGTTAATTTCCAACT-----TTTT-AGTGAG 1813
|||||||||||||||||| ||||| ||||| ||||||||| ||| |||| |||||
Sbjct 1725 CACTTAACATTCAAAGCACTTCAACCACAAATTAATTTCCTACTAAAACTTTTGAGTGAA 1784
Query 1814 TTA--GGTAAAAGAGGAGAAAG--TTTGAAAAACAAGAAGTGAGTATCAT-CATTA-AA- 1866
||| |||||||| ||| |||| ||||||||||||||||||||||||| || | ||
Sbjct 1785 TTATAGGTAAAAGGGGAAAAAGAGTTTGAAAAACAAGAAGTGAGTATCAAACAAAACAAA 1844
Query 1867 GTGCACAACATTA-----CC--GACTCAATTATTAGGCCACACACAAATTTGTTTTTAGA 1919
||||||||||||| || |||||||| ||| |||| |||||||||||||||||| |
Sbjct 1845 GTGCACAACATTATTGAGCCCCGACTCAATAATTGGGCCTCACACAAATTTGTTTTTAAA 1904
Query 1920 AGGCCCGTTTAGACCACAAACCGACT 1945
||||||||||||||||||||||||||
Sbjct 1905 AGGCCCGTTTAGACCACAAACCGACT 1930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75152053385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5