BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G01940.1

Length=736
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg333465 jgi|Araly1|333465|fgenesh1_pg.C_scaffold_1000030           804    0.0  


> Ahg333465 jgi|Araly1|333465|fgenesh1_pg.C_scaffold_1000030
Length=483

 Score =  804 bits (435),  Expect = 0.0
 Identities = 467/483 (97%), Gaps = 0/483 (0%)
 Strand=Plus/Plus

Query  56   ATGTCGGTAACTTTGCACACGAACCTGGGTGACATCAAGTGCGAAATCTTCTGTGACGAG  115
            ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  1    ATGTCGGTAACTTTGCACACGAATCTGGGTGATATCAAGTGCGAAATCTTCTGTGACGAG  60

Query  116  GTTCCCAAGAGTGCTGAGAACTTTTTGGCGTTGTGTGCTAGTGGCTACTACGATGGTACT  175
            |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  61   GTTCCCAAGAGTGCCGAGAACTTTTTGGCGTTATGTGCTAGCGGCTACTACGATGGTACT  120

Query  176  ATCTTTCATAGAAATATCAAAGGGTTCATGATTCAAGGAGGAGACCCCAAGGGGACCGGA  235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  ATCTTTCATAGAAATATCAAAGGGTTCATGATTCAAGGAGGAGACCCCAAGGGGACCGGG  180

Query  236  AAAGGAGGAACTAGCATCTGGGGCAAGAAATTCAATGATGAGATCCGAGACTCCCTTAAG  295
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  181  AAAGGAGGAACTAGCATCTGGGGCAAGAAATTCAATGATGAGATCCGAGAGTCCCTTAAG  240

Query  296  CACAATGCAAGAGGGATGCTGTCAATGGCAAACAGCGGTCCAAACACCAACGGAAGCCAG  355
            |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct  241  CACAATGCAAGAGGGATGTTGTCAATGGCAAACAGTGGTCCAAACACCAATGGAAGCCAG  300

Query  356  TTCTTCATAACCTATGCAAAACAACCACATCTCAATGGATTATACACCATCTTTGGCAAA  415
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTCTTCATAACCTACGCAAAGCAACCACATCTCAATGGATTATACACCATCTTTGGCAAA  360

Query  416  GTCATTCATGGCTTCGAAGTGCTTGACATTATGGAAAAGACTCAAACAGGACCAGGAGAT  475
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  361  GTCATTCATGGCTTTGAAGTTCTTGACATTATGGAAAAGACTCAAACAGGACCAGGAGAT  420

Query  476  AGGCCGCTTGCTGAGATAAGGCTAAACCGTGTGACGATCCACGCCAATCCACTTGCTGGT  535
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  421  AGGCCGCTTGCTGAAATAAGGCTAAACCGTGTAACGATCCACGCCAATCCACTTGCTGGT  480

Query  536  TAA  538
            |||
Sbjct  481  TAA  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27105393987


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5