BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01970.1
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470077 jgi|Araly1|470077|fgenesh2_kg.1__31__AT1G01970.1 2331 0.0
> Ahg470077 jgi|Araly1|470077|fgenesh2_kg.1__31__AT1G01970.1
Length=1492
Score = 2331 bits (1262), Expect = 0.0
Identities = 1421/1497 (95%), Gaps = 13/1497 (1%)
Strand=Plus/Plus
Query 1 CACCGCTCTAAATTCTAATCTATCCACACCAGCTCTGTCTATGAACTTTGCTTGGCTCAT 60
||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||||||
Sbjct 1 CACCGCTCTAAATTCTAATCTAT-C-CACCAGCTCTGTATATGAACTTTGCTTTGCTCAT 58
Query 61 CTCCTTTATCTCCAGTTTCTCCTGAGCTCTGCTTTTTGTAAGTAATCATCAGAGAAGCTC 120
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 59 CTCTTTTATCTCCAGTTTCT-CTGAGCTCTGCTTTTTGTAAGTAATCATCAGAGAAGCTC 117
Query 121 AATTCTGTACTTGTATGATCCTCAATTAGGCCTTTG-A-ATTCATGACTTGTTTTCTAGA 178
|||||||||||||||||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct 118 AATTCTGTACTTGTATGATCCTTAATTAGGCCTTTGAATATTCCTGACTTGTTTTCTAGA 177
Query 179 GATTAGGTTCATGTGAAATCATACGGCCGCCAAATTTAGGTTTTTCTCTTTTAGTTC--- 235
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 178 GATTCCGTTCATGTGAAATCATACGGCCGCCAAATTTAGGTTTTT-TCTTTTAGTTCTGG 236
Query 236 T-T-GAGGTATACAATGGGAATTTATAGCTGCAGCGCAGTGTTGAGCTTCGGCTTGAAAT 293
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCTGGAGGTCTACAATGGGAATTTATAGCTGCAGCGCAGTGTTGAGCTTCGGCTTGAAAT 296
Query 294 GTCCATTAGTTATTGCAAGGCATAGGCTTTACCATCGCATGTTTAGACGAAACCCATTAC 353
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 GTCCATTAGTTATTGCAAGGCATAGGCTTTACCATCGCATGTTTAGACGAATCCCATTAC 356
Query 354 TTGTAGAATCCCATCTTAATAGGCTCTGTAGTTGCAAATGTAATGCGAGTCTGGCCATTG 413
|||||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 357 TTGTAGAATCCCGTCTAAATAGGCTCTGTAGTTGCAAATGTAGTGCGAGTTTGGCCATTG 416
Query 414 GCGAAGTTGTGGAGAAGGAAGATGCAGAGCAAAGCCGTAGTTTTAATTGGGCTGATGTTG 473
|||| ||||| |||||||||||| |||| |||| || ||| | |||||||| ||||||||
Sbjct 417 GCGAGGTTGTAGAGAAGGAAGATACAGAACAAATCCCTAGGTCTAATTGGGTTGATGTTG 476
Query 474 GTCTGAATCTGACAGAAGAACAAGACGAGGCAATCACTCGGATTCCTATTAAGATGTCAA 533
||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 477 GTCTGGATCTGACAGAAGAACAGGATGAGGCAATCACTCGGATTCCTATTAAGATGTCAA 536
Query 534 AACGTTGTCAAGCGCTTATGCGGCAAATTATTTGCTTCTCCCCCGAAAAGGGAAGCTTTT 593
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 537 AACGTTGTCAAGCGCTTATGCGGCAGATTATTTGCTTCTCCAGCGAAAAGGGAAGCTTTT 596
Query 594 GCGATTTGTTGGGTGCTTGGCTTAGGAGGATGAACCCCATTAGAGCTGACTGGCTTTCTA 653
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTGATTTGTTGGGTGCTTGGGTTAGGAGGATGAACCCCATTAGAGCTGACTGGCTTTCTA 656
Query 654 TTCTTAAAGAGTTGAAGAATCTTGACTCTCCGTTTTATATCAAGGTGGCTGAATTTTCGC 713
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 657 TTCTTAAAGAGTTGAAGAATCTTGACTCTCCCTTTTATATCAAGGTGGCTGAATTTTCGC 716
Query 714 TGCTCCAAGATTCCTTTGAAGCGAATGCCCGTGATTATACCAAGATCATCCATTATTATG 773
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 TGCTCGAAGATTCCTTTGAAGCGAATGCCCGTGATTATACCAAGATCATCCATTACTATG 776
Query 774 GGAAGCTAAACCAAGTAGAAGACGCTGAAAGAACTCTTCTTTCCATGAAAAATCGAGGCT 833
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGAAGCTAAACCAAGTGGAAGACGCTGAAAGAACTCTTCTTTCCATGAAAAATCGAGGCT 836
Query 834 TTCTTATTGATCAGGTGACCCTTACTGCAATGGTTCAGTTGTACAGCAAGGCAGGCTGTC 893
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 837 TTCTCATTGATCAGGTGACCCTTACTGCAATAGTTCAGTTGTATAGCAAGGCAGGCTATC 896
Query 894 ATAAATTGGCTGAAGAAACTTTCAACGAGATCAAATTGCTTGGGGAACCACTAGACT-AC 952
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 897 ATAAATTGGCTGAAGAAACTTTCAACGAGATCAAATTGCTTGGGGAGCCACTAGA-TAAT 955
Query 953 CGATCCTATGGTTCAATGATTATGGCCTACATCAGAGCTGGTGTCCCCGAGAAAGGAGAG 1012
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 956 CGATCATATGGTTCAATGATTATGGCCTACATTAGAGCTGGTGCCCCCGAGAAAGGAGAG 1015
Query 1013 TCTCTACTTAGAGAAATGGACTCCCAAGAGATATGTGCGGGAAGAGAGGTTTACAAGGCA 1072
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GCTTTACTCCGAGAAATGGACTCCCAAGAGATATGTGCGGGAAGAGAGGTTTACAAGGCA 1075
Query 1073 TTGTTGAGAGATTACTCTATGGGCGGAGACGCGGAAGGAGCTAAGCGGGTTTTTGATGCA 1132
|||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1076 TTGTTGAGAGCTTACTCTATGGGTGGAGACGCGGAAGGAGCTAAGCGGGTCTTTGATGCC 1135
Query 1133 GTTCAAATTGCAGGTATTACTCCTGATGTAAAGCTATGTGGACTGCTCATAAACGCATAC 1192
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GTTCAAATTGCGGGGATTACTCCTGATGTAAAGCTATGTGGACTGCTCATAAACGCATAC 1195
Query 1193 AGTGTCTCGGGTCAGAGCCAGAATGCTCGTTTGGCGTTTGAGAATATGAGAAAAGCGGGA 1252
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1196 AGTGTCTCAGGTCAGAGTCAGAATGCGCGTTTGGCGTTTGAGAATATGAGAAAAGCGGGA 1255
Query 1253 ATCAAAGCTACTGATAAGTGTGTGGCTCTTGTATTGGCTGCATATGAGAAGGAAGAAAAG 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATCAAAGCTACTGATAAGTGTGTGGCTCTTGTATTGGCTGCATATGAGAAGGAAGAAAAG 1315
Query 1313 CTAAATGAAGCGTTAGGATTCTTGGTAGAGCTTGAGAAAGACTCTATAATGTTAGGGAAA 1372
||||| ||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1316 CTAAACGAAGCATTAGGGTTCTTGGTTGAGCTTGAGAAAGACTCTATAATGGTAGGGAAA 1375
Query 1373 GAAGCTTCTGCTGTGTTGGCTCAGTGGTTTAAGAAGCTTGGTGTTGTTGAAGAAGTTGAA 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GAAGCTTCTGCTGTGTTGGCTCAGTGGTTTAAGAAGCTTGGTGTTGTTGAAGAAGTTGAA 1435
Query 1433 TTACTTCTTAGGGAGTTTTCATCTAGCCAGTCTCAACCCCTCTAACATTGTGGGCTT 1489
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1436 TTACTTCTTAGGGAGTTTTCATCTAGCCAGTCTCAGCCCCTCTAAGATTGTGGGCTT 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61820467635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5