BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01980.1
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470076 jgi|Araly1|470076|fgenesh2_kg.1__30__AT1G01980.1 2617 0.0
Ahg471318 jgi|Araly1|471318|fgenesh2_kg.1__1272__AT1G11770.1 1236 0.0
> Ahg470076 jgi|Araly1|470076|fgenesh2_kg.1__30__AT1G01980.1
Length=1793
Score = 2617 bits (1417), Expect = 0.0
Identities = 1561/1632 (96%), Gaps = 4/1632 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTCTCTTGTTTGGTTTTTCTCATAGTATCGTCTCTTGTTTCGAGTTCTCTTGCC 60
||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 ATGAAGCTCTCTTGTTTTGTTTTTCTCATATTATTGTCTCTTGTTTCGAGTTCTCTTGCC 60
Query 61 ACCGCTCCGCCCAACACATCTATATATGAAAGCTTTCTCCAATGTTTCAGCAATCAAACA 120
|| |||||||||||| ||||||| || |||||||||||||||||||||||||| || |||
Sbjct 61 ACGGCTCCGCCCAACGCATCTATTTACGAAAGCTTTCTCCAATGTTTCAGCAACCACACA 120
Query 121 GGTGCTCCTCCTGAGAAGTTATGCGACGTCGTTCTGCCTCAAAGCAGTGCCAGCTTCACT 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCGCTCCTCCTGAGAAGTTATGCGACGTCGTTCTGCCTCAAAGCAGTGCCAGCTTCACC 180
Query 181 CCAACCCTACGTGCCTACATCCGTAACGCTCGTTTCAACACTTCCACGTCCCCCAAACCT 240
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 181 CCAACCCTACGCGCCTACATCCGCAACGCTCGTTTCAACACTTCCACGTCTCCCAAACCT 240
Query 241 CTGCTCGTTATCGCGGCGCGTTCTGAGTGCCACGTCCAGGCCACCGTCCTCTGCACCAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGCTCGTTATCGCGGCGCGTTCTGAGTGCCACGTCCAGGCCACCGTCCTCTGCACCAAA 300
Query 301 TCTCTCAACTTCCAGCTCAAGACTCGCAGCGGCGGCCATGACTACGACGGCGTTTCCTAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTCTCAACTTCCAGCTCAAGACTCGCAGCGGCGGCCATGACTACGACGGCGTTTCCTAC 360
Query 361 ATCTCTAACCGCCCTTTCTTCGTCCTCGACATGTCCTATCTCCGTAACATTACCGTCGAT 420
||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 361 ATCTCTAACTGCCCTTTCTTCGTCCTCGACATGTCCTGTCTCCGTAACATCACCGTCGAT 420
Query 421 ATGTCCGACGACGGCGGCTCTGCTTGGGTTGGAGCCGGCGCTACTCTCGGCGAAGTTTAT 480
||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 421 ATGTCCGACAACGGAGGCTCTGCCTGGGTTGGAGCCGGCGCTACTCTCGGCGAGGTTTAT 480
Query 481 TACAACATTTGGCAGAGCAGCAAAACTCACGGCACTCACGGATTTCCCGCCGGTGTTTGT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 481 TACAACATTTGGCAGAGCAGCAAAACTCACGGCACTCACGGGTTTCCCGCCGGAGTTTGT 540
Query 541 CCCACAGTAGGCGCTGGAGGTCACATTAGCGGCGGGGGCTACGGCAACATGATCAGAAAA 600
||||| || || || || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 CCCACCGTCGGAGCCGGGGGTCACATTAGCGGCGGAGGCTACGGCAACATGATCAGAAAG 600
Query 601 TACGGACTTTCCGTGGACTACGTCACGGACGCCAAAATCGTAGACGTGAACGGACGGATT 660
||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 TACGGGCTTTCCGTTGATTACGTCACGGACGCCAAGATCGTAGACGTGAACGGACGGATT 660
Query 661 CTCGATCGTAAATCGATGGGAGAGGATTTGTTTTGGGCGATTGGAGGCGGTGGTGGTGCG 720
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 661 CTCGATCGTAAATCGATGGGAGAGGATTTCTTTTGGGCAATTGGAGGCGGTGGTGGTGCG 720
Query 721 AGCTTCGGCGTGATCTTATCTTTCAAGATCAAACTCGTGCCTGTTCCTCCGAGGGTGACT 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 AGCTTCGGCGTGATCTTATCTTTCAAAATCAAACTCGTGCCTGTTCCTCCGAGGGTGACT 780
Query 781 GTTTTCAGAGTGGAGAAGACCCTAGTAG-AAAACGCACTTGACATGGTCCATAAATGGCA 839
||||||||||||||||| ||||| | || |||||||||||||||||||||||||||||||
Sbjct 781 GTTTTCAGAGTGGAGAAAACCCTCG-AGGAAAACGCACTTGACATGGTCCATAAATGGCA 839
Query 840 GTTTGTTGCTCCCAAGACCAGCCCGGATCTCTTCATGAGGCTAATGTTGCAGCCAGTGAC 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 GTTTGTTGCTCCCAAGACCAGCCCGGATCTCTTCATGAGGCTAATGTTGCAGCCGGTGAC 899
Query 900 CCGGAACACGACTCAGACGGTTCGCGCGTCGGTAGTTGCTCTGTTCTTGGGAAAACAGAG 959
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 900 CCGGAACACGACTCAGACTGTTCGAGCGTCGGTGGTTGCTCTGTTCTTGGGAAAACAGAG 959
Query 960 CGATCTCATGTCTCTGCTGACCAAGGAGTTCCCCGAGCTTGGTCTGAAGCCGGAGAATTG 1019
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 960 CGATCTCATGTCTCTGCTGACCAAAGAGTTCCCGGAGCTTGGTCTGAAGCCGGAGAATTG 1019
Query 1020 CACGGAGATGACGTGGATACAGTCGGTGATGTGGTGGGCCAACAACGACAACGCCACGGT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CACGGAGATGACGTGGATACAGTCGGTGATGTGGTGGGCCAACAACGACAACGCCACGGA 1079
Query 1080 GATTAAACCGGAGATCCTGCTGGATCGAAATCCGGATTCGGCGTCTTTCTTGAAAAGAAA 1139
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1080 GATTAAACCGGAGATCCTGCTGGACCGAAACCCGGATTCGGCGTCTTTCTTGAAAAGAAA 1139
Query 1140 ATCGGATTACGTGGAGAAAGAGATCAGCAAAGACGGTTTAGATTTCTTGTGTAAGAAGTT 1199
||||||||||||||||| |||||| ||||||||||||||||||||| ||| |||||||||
Sbjct 1140 ATCGGATTACGTGGAGACAGAGATTAGCAAAGACGGTTTAGATTTCCTGTTTAAGAAGTT 1199
Query 1200 GATGGAGGCTGGGAAGCTAGGGCTAGTGTTCAATCCATACGGAGGGAAAATGAGCGAAGT 1259
|||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||
Sbjct 1200 GATGGAGGCTGGGAAGCTAGGGCTTGTTTTCAATCCGTATGGAGGGAAAATGAGCGAAGT 1259
Query 1260 TGCTACGACGGCGACTCCGTTCCCACACAGGAAGAGGCTTTTCAAGGTCCAGCATTCGAT 1319
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGCTACTACGGCGACTCCATTCCCACACAGGAAGAGGCTTTTCAAGGTCCAGCATTCGAT 1319
Query 1320 GAACTGGAAAGACCCGGGCACTGATGTTGAAAGCAGTTTCATGGAAAAGACGAGAAGCTT 1379
|||||||||||||||||||||||| | || |||||||||||||||| ||||||||||||
Sbjct 1320 GAACTGGAAAGACCCGGGCACTGAAGCGGAGAGCAGTTTCATGGAAAGGACGAGAAGCTT 1379
Query 1380 CTACAGCTACATGGCTCCTTTCGTGACCAAGAATCCAAGACACACGTATCTCAACTACAG 1439
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1380 CTACAGCTACATGGCTCCTTTCGTGACCAAGAATCCAAGACACACGTATCTCAATTACAG 1439
Query 1440 GGATCTTGATATCGGGATCAACAGCCATGGCCC-AAACAGTTACAGAGAAGCTGAGGTTT 1498
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1440 GGATCTTGATATCGGGATCAACAGCCATGGCCCGAAA-AGTTACAGAGAAGCTGAGGTTT 1498
Query 1499 ACGGGAGAAAGTATTTCGGAGAGAATTTTGATCGGTTGGTCAAAGTCAAAACAGCCGTGG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACGGGAGAAAGTATTTCGGAGAGAATTTTGATCGGTTGGTCAAAGTCAAAACAGCCGTGG 1558
Query 1559 ATCCAGAAAACTTTTTCAGAGATGAACAAAGTATACCTACCTTGCCTACCAAGCCATCCT 1618
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1559 ATCCAGAAAACTTTTTCAGAGATGAACAGAGTATACCTACCTTGCCTACCAAGCCAGCCT 1618
Query 1619 CGAGTTAGGTTT 1630
|||||||| |||
Sbjct 1619 CGAGTTAGTTTT 1630
> Ahg471318 jgi|Araly1|471318|fgenesh2_kg.1__1272__AT1G11770.1
Length=1611
Score = 1236 bits (669), Expect = 0.0
Identities = 1258/1541 (82%), Gaps = 45/1541 (3%)
Strand=Plus/Plus
Query 89 AAAGCTTTCTCCAATGTTTCAGC-AATCAAACAGGTGCTCCTCCTGA-GAAGTTATGCGA 146
||| ||||||||||||||||| | || |||||| ||||||||| | | |||| |||
Sbjct 89 AAAACTTTCTCCAATGTTTCA-CAAACCAAACAAAAGCTCCTCCTAACTCA-TTATCCGA 146
Query 147 CGTCGTTCTGCCTCAAAGCAGTGCCAGC-TTCACTCCAACCCTACGTGCCTACATCCGTA 205
||||||| | || ||| | | | |||| ||||| ||| |||||| || |||||||| |
Sbjct 147 CGTCGTTTTACC-AAAAACCGCGGCAGCTTTCACCCCAGTCCTACGCGCTTACATCCGAA 205
Query 206 ACGCTCGTTTCAACACTTCCACGTCCCCCAAA-CCTCTGCTCGTTATCGCGGCGCGTTCT 264
|||| |||||||| || || || | || ||| || | | | || |||||||| |||||
Sbjct 206 ACGCGCGTTTCAATACCACCGCGACTCCGAAACCCGC-GATTGTAATCGCGGCTCGTTCC 264
Query 265 GAGTGCCACGTCCAGGCCACCGTCCTCTGCACCAAATCTCTCAACTTCCAGCTCAAGACT 324
||| |||||||||| || ||||| ||||||| ||||| || ||| |||| || || |||
Sbjct 265 GAGAGCCACGTCCAAGCTGCCGTCATCTGCACGAAATCGCTAAACATCCAACTGAAAACT 324
Query 325 CGCAGCGGCGGCCATGACTACGACGGCGTTTCCTACATCTCTAACCG-CCCTTTCTTCGT 383
|| ||||| || ||||||||||| || |||||||| ||||| | || |||||||||||
Sbjct 325 CGAAGCGGTGGTCATGACTACGAAGGTGTTTCCTATGTCTCTCA-CGTTCCTTTCTTCGT 383
Query 384 CCTCGACATGTCCTATCTCCGTAACATTACCGTCGATATGTCCGACGACGGCG-GCTCTG 442
||||||||||||| ||||||||||||| ||||||| | ||| | || || | ||||
Sbjct 384 CCTCGACATGTCCAATCTCCGTAACATCACCGTCG--A--CCCGGCCAC--CGAG-TCTG 436
Query 443 CTTGGGTTGGAGCCGGCGCTACTCTCGGCGAAGTTTATTACAACATTTGGCAGAGCAGCA 502
| ||||| |||||||| || ||||| || || |||||||||| |||||| || | |
Sbjct 437 CATGGGTCGGAGCCGGTGCAACTCTTGGTGAGGTTTATTACAGGATTTGG--GA--A--A 490
Query 503 AAACTCACGGCACTCACGGATTTCCCGCCGGTGTTTGTCCCACAGTAGGCGCTGGAGGTC 562
|||| || | ||| ||||| |||||||| ||||||||||| || || || |||||||
Sbjct 491 AAAC-CA--AAAGTCATGGATTCCCCGCCGGAGTTTGTCCCACGGTTGGAGCCGGAGGTC 547
Query 563 ACATTAGCGGCGGGGGCTACGGCAACATGATCAGAAAATACGGACTTTCCGTGGACTACG 622
|||||||||| || || ||||| ||||||||| ||||||||||||||||||| || ||||
Sbjct 548 ACATTAGCGGTGGCGGTTACGGAAACATGATCCGAAAATACGGACTTTCCGTTGATTACG 607
Query 623 TCACGGACGCCAAAATCGTAGACGTGAACGGACGGATTCTCGATCGTAAATCG-ATGGGA 681
| || |||||||||||||| ||||| || |||||| |||| ||||| ||| | ||||||
Sbjct 608 TTACCGACGCCAAAATCGTTGACGTTAATGGACGGGTTCTTGATCGGAAA-GGAATGGGA 666
Query 682 GAGGATTTGTTTTGGGCGATTGGA-GGCGGTGGTGGTGCGAGCTTCGGCGTGATCTTATC 740
|| |||||||||||||| ||| | || || |||||||| |||||||| || ||| || |
Sbjct 667 GAAGATTTGTTTTGGGCCATT-AACGGTGGAGGTGGTGCTAGCTTCGGTGTTATCCTAGC 725
Query 741 TTTCAAGATCAAACTCGTGCCTGTTCCTCCGAGGGTGACTGTTTTCAGAGTGGAGAAGAC 800
||||||||| |||||||| |||||||| |||| || || ||||||||||| ||||| |
Sbjct 726 TTTCAAGATTAAACTCGTCCCTGTTCCACCGACCGTAACCGTTTTCAGAGTAGAGAA-AA 784
Query 801 CCTAGTA-GAAAACGC-ACTTGACATGGTCCATAAATGGCAGTTTGTTGCTCCCAAGACC 858
|| | | ||||| || | |||||||||| |||||||||||||||||||| |||||||||
Sbjct 785 ACTTGGACGAAAATGCTA-TTGACATGGTTCATAAATGGCAGTTTGTTGCACCCAAGACC 843
Query 859 -AGCCCGGATCTCTTCATGAGGCTAATGTTGCAGCCAGTGACCCGGAACACGACTCAGAC 917
| || || ||| |||||||||||| |||| ||||| ||||| ||||| | | || ||
Sbjct 844 GATCCAGG-TCTTTTCATGAGGCTATTGTTACAGCCGGTGACTCGGAATAAAAAACAAAC 902
Query 918 GGTTCGCGCGTCGGTAGTTGCTCTGTTCTTGGGAAAACAGAGCGA-TCTCATGTCTCTGC 976
|||||| || ||||| || |||||||||||||| || || | | | | | |||||| |||
Sbjct 903 GGTTCGAGCATCGGTTGTGGCTCTGTTCTTGGGGAACCAAAAC-ACTGTTATGTCTATGC 961
Query 977 TGACCAAGGAGTTCCCCGAGCTTGGTCTGAAGCCGGAGAATTGCACGGAGATGACGTGGA 1036
| ||||| || ||||| ||||| ||||| ||| ||||||||||||||||||||| ||||
Sbjct 962 TAACCAAAGATTTCCCAGAGCTAGGTCTAAAGAAGGAGAATTGCACGGAGATGACTTGGA 1021
Query 1037 TACAGTCGGTGATGTGGTGGGCCAACAACGACAACGCCACGGTGATTAAACCGGAGATCC 1096
|||||||||||||||||||||| |||||||| |||||||| ||||||||| ||||| |
Sbjct 1022 TACAGTCGGTGATGTGGTGGGCGAACAACGATAACGCCACACAGATTAAACCCGAGATTC 1081
Query 1097 TGCTGGATCGAAATCCGGATTCGGCGTCTTTCTTGAAAAGAAAATCGGATTACGTGGAGA 1156
| ||||||||||| ||||| || || |||||| |||||| || || |||| ||| ||||
Sbjct 1082 TACTGGATCGAAACCCGGACTCAGCATCTTTCGGGAAAAGGAAGTCTGATTTCGTCGAGA 1141
Query 1157 AAGAGATCAGCAAAGACGGTTTAGATTTCTTGTGT-AAGAAGTTGATGGAGGCTGGGAAG 1215
||||||||| |||||| || |||||||||||| | |||||| |||| || | |||||||
Sbjct 1142 AAGAGATCACCAAAGAGGGGCTAGATTTCTTGT-TCAAGAAGATGATTGAAGTTGGGAAG 1200
Query 1216 CTAGGGCTAGTGTTCAATCCATACGGAGGGAAAATGAGCGAAGTTGCTACGACGGCGACT 1275
|||| ||||||| ||||| || ||||||| ||||||||| || ||||| ||| ||||
Sbjct 1201 ATAGGTTTAGTGTTTAATCCTTATGGAGGGATAATGAGCGAGGTGGCTACAACGAAGACT 1260
Query 1276 CCGTTCCCACACAGGAAGAGGCTTTTCAAGGTCCAGCATTCGATGAACTGGAAAGACCCG 1335
|| ||||| |||||||||| ||||| ||| ||||||||||||||||||||||||| |||
Sbjct 1261 CCATTCCCGCACAGGAAGAAGCTTTACAAAATCCAGCATTCGATGAACTGGAAAGATCCG 1320
Query 1336 GGCACTGATGTTGAAAGCAGTTTCATGGAAAAGACGAGAAGCTTCTACAGCTACATGGCT 1395
|| || || | |||| ||||||| || | ||| ||| ||| ||||| ||||||||||||
Sbjct 1321 GGAACCGAAGCGGAAACCAGTTTCTTGCAGAAGGCGAAAAGTTTCTATAGCTACATGGCT 1380
Query 1396 CCTTTCGTGACCAAGAATCCAAGACACACGTATCTCAACTACAGGGATCTTGATATCGGG 1455
||||||||||||||||| || |||||||| ||| |||| ||||||||||| ||||| ||
Sbjct 1381 CCTTTCGTGACCAAGAACCCTAGACACACTTATATCAATTACAGGGATCTGGATAT-TGG 1439
Query 1456 A-TCAACAGCCATGGCCCAAACAGTTACAGAGAAGCTGAGGTTTACGGGAGAAAGTATTT 1514
| | || | || |||||||||||||||||||| ||| ||||||| |||||| | ||||||
Sbjct 1440 AGTTAATACCCCTGGCCCAAACAGTTACAGAGTAGCAGAGGTTTTCGGGAGGATGTATTT 1499
Query 1515 CGGAGAGAATTTTGATCGGTTGGTCAAAGTCAAAACAGCCGTGGATCCAG-AAAACTTTT 1573
|||||||||||||||||||||||| ||||| ||||| ||||||||||| | ||||||| |
Sbjct 1500 CGGAGAGAATTTTGATCGGTTGGTGAAAGTGAAAACTGCCGTGGATCC-GCAAAACTTCT 1558
Query 1574 TCAGAGATGAACAAAGTATACCTACCTTGCCTACCAAGCCA 1614
||||||| ||||| ||||||||||||||||||| ||| |||
Sbjct 1559 TCAGAGACGAACAGAGTATACCTACCTTGCCTAGCAACCCA 1599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68638621490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5