BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01990.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470075 jgi|Araly1|470075|fgenesh2_kg.1__29__AT1G01990.1 922 0.0
> Ahg470075 jgi|Araly1|470075|fgenesh2_kg.1__29__AT1G01990.1
Length=967
Score = 922 bits (499), Expect = 0.0
Identities = 647/715 (90%), Gaps = 24/715 (3%)
Strand=Plus/Plus
Query 139 AGAAATGGGGAGTTTAGTGAAAGCATATTACTGTAACCAGATGCATCACAACAGCAT--- 195
||||||||||||| ||||||| || || | | |||||||| | |||||||||||
Sbjct 49 AGAAATGGGGAGTCTAGTGAAGGC---GTA-T-T-ACCAGATGAACCACAACAGCATCCC 102
Query 196 CATCCCCCACTTTCACCA-TTACAGACCTT-CAAGCCTTCAAAACcctatctccctcttc 253
| | | ||| || || || |||||| |||| ||| |||||||||||||||||||||||||
Sbjct 103 CTTTCACCA-TTACAACAGTTACAGGCCTTCCAA-CCTTCAAAACCCTATCTCCCTCTTC 160
Query 254 gccatcacttctccctcctc---ctc-tgaacctc-ct-tctcctcctgttaaacatccc 307
|||||||||||||||||||| | | | | | || || |||||||| |||||||||
Sbjct 161 GCCATCACTTCTCCCTCCTCTGACCCATCATCTTCTCTCCCTCCTCCTCACAAACATCCC 220
Query 308 cttcctc-AAT--TCGGCGGCGGCGGCCACTTCATCATCCCCACCATCGCCGTCGCTGCT 364
| ||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CCTCCTCTATTCGTCGGCGGCGGCGGCCACTTCATCATCCCCACCATCGCCGTCGCTGCT 280
Query 365 TCCGCCTGGTTCTTCTTCCGTCTACACCAATACCCTCCTATCATCACCTCCCC-CGTTGA 423
||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||
Sbjct 281 TCCGCCTGGTTCTTCTTCCGTCTCCACCAATACCCTCCTATCATCACCGCCCCTC-TTGA 339
Query 424 TCTCCACCTCGATTTGGAAGAAGAAGGCGCTATCAAAGAGCTTCCTTTGGAGAGCAAGCC 483
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 340 TCTCCACCTCGATTTGCTGGAAGATGGTGCTATCAAAGAGCTTCCTTTGGAGAGCAAGCC 399
Query 484 TGGTTACGTTAAAGCTCTTCACTTCTACAAAATCAAGCCAGGTACCGTCTTGAAACTCTT 543
| |||| ||| ||||||||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 400 TCGTTATGTTCAAGCTCTTCACTTTTACAAAATCCAGCCAGGTACGGTCTTGAAACTCTT 459
Query 544 GGACGTTTTCGACTCCGACAGCTACGACTCCTTGAAAGCCCGGATTCGTTTATCCGCCGA 603
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 460 AGACGTTTTCGACTCCGATAGCTACGACTCCTTGAAAGCCCGGATTCGTTTATCCGCCGA 519
Query 604 GTGGTTAGAAACTGCCAGGAGAGAATTGGAGGAGGTGGTTGAGAGAGACCCTGGTCGGGT 663
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||||
Sbjct 520 GTGGTTAGAAACTGCCAGGAGGGAATTGGAGGAGGTGGTGGAGAGGGATCCGGGTCGGGT 579
Query 664 CATGGAGTATTCTCAGGTGGTTGATGAGCTCATGGAGATTCTCAGGGACATGGAGGTTTA 723
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 580 CATGGAGTATTCTCAGGTGGTTGATGAGCTCATGGAGATTCTCAGGGATATGGAAGTTTA 639
Query 724 CATTGATAAATGCCAAAAGGACAACGTCAAGGGTTACCTCAGATCCTGCAACCGATTGCT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 CATTGATAAATGCCAAAAGGACAACGTCAAGGGTTACCTCAGATCCTGCAACCGATTGCT 699
Query 784 TGCTCGTGTCAGGAGAATGGAAGCTCAGATTCTCAATGTCCTCAAAGAGTTTCAC 838
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 700 TGCTCGTGTCAGGAGAATGGAAGCTCAGATTCTCAATGTCCTCAAAGAGTTCCAC 754
Score = 89.8 bits (48), Expect = 4e-17
Identities = 55/58 (95%), Gaps = 2/58 (3%)
Strand=Plus/Plus
Query 930 CAAAGTTCATTATGTTTTGGTTCTA--TCTATCTCTAGGATGGTAAATAGGTGGTAAT 985
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 782 CAAAGTTCATTATGTTTTGGTTCTATCTCTATCTCTAGGATGGTAAATAGATGGTAAT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5