BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02000.1
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918756 jgi|Araly1|918756|scaffold_100037.1 2045 0.0
Ahg935483 jgi|Araly1|935483|scaffold_403471.1 713 0.0
> Ahg918756 jgi|Araly1|918756|scaffold_100037.1
Length=1347
Score = 2045 bits (1107), Expect = 0.0
Identities = 1261/1334 (95%), Gaps = 16/1334 (1%)
Strand=Plus/Plus
Query 223 CTGGGA-ATCAAATCTTTG-ATGTCGCATCT-G--GACGACATTCCTTCTACGCCTGGGA 277
|||| | |||||||||||| ||||||||||| | ||||||||||||||||| |||||||
Sbjct 1 CTGGAAGATCAAATCTTTGAATGTCGCATCTCGACGACGACATTCCTTCTACTCCTGGGA 60
Query 278 AATTCAAGATGATGGATAAATCCCCCTTCTTCCTGCACCGTACTCGTTGGCAATCCTCCG 337
||||| | | ||||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 61 AATTC-A-A-GATGGATAAATCCCCCTACTTCCTCCACCGTACTCGGTGGCAATCCTCCG 117
Query 338 TCGCCAAGCTTGCCTTTTGGTCCCTTGTCTTTTTCGGATTGCTCTTCATCTTCTTCTACC 397
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCGCCAAGCTTGCTTTTTGGTCCCTTGTCTTTTTCGGATTGCTCTTCATCTTCTTCTACC 177
Query 398 GATCTCCCATCTCCAATCCCGATTCCTCTCGCCGCTCTCTTCGCACCTACTCTTGGGGCG 457
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 178 GATCTCCCATCTCCAATCCCGATTCTTCTCGCCGCTCTCTTCGCACCTACTCTTGGGGCG 237
Query 458 GTCCCGC-CTGGGAGAAACGCGTCCGATCCTCCGCTCGTGTCCGCACCCGCAACGGCGTC 516
||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 GTCCC-CACTGGGAGAAACGCGTCAGATCCTCCGCTCGTGTCCGCACCCGCAACGGCGTC 296
Query 517 TCCGTTCTCGTCACCGGGGCCGCCGGTTTCGTCGGGACTCACGTCTCTGCCGCTCTTAAA 576
||||||||||||||||| |||||||| |||||||| || |||||||| ||||||||||||
Sbjct 297 TCCGTTCTCGTCACCGGAGCCGCCGGCTTCGTCGGAACGCACGTCTCAGCCGCTCTTAAA 356
Query 577 CGACGCGGCGACGGCGTTCTAGGCCTCGACAACTTCAACGATTACTACGACACCTCTCTC 636
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 357 CGACGCGGCGACGGCGTTCTAGGGCTCGACAACTTCAACGATTACTACGACACGTCTCTC 416
Query 637 AAGAGATCTCGACAAGCCCTCCTCGAGAGAAGCGGAGTGTTCATCGTTGAAGGAGACATC 696
||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 417 AAGAGATCTCGGCAAGCCCTCCTCGAGCGAAGCGGAGTGTTCATCGTGGAAGGAGACATC 476
Query 697 AACGATCTGTCTCTCCTCAAGAAGCTCTTCGAGGTCGT-CCCTTTCACTCACGTCATGCA 755
|||||| |||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 477 AACGATTTGTCTCTCCTGAAGAAGCTCTTCGAGGTCGTGCCC-TTCACTCACGTCATGCA 535
Query 756 TCTTGCCGCTCAAGCTGGTGTCAGATACGCCATGGAGAACCCCGGCTCCTACGTTCACAG 815
||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 536 TCTGGCCGCTCAAGCTGGTGTCAGATACGCCATGGAGAATCCCAGCTCCTACGTTCACAG 595
Query 816 CAACATCGCTGGTTTCGTTAACCTCCTCGAGGTCTGTAAATCCGCTAATCCTCAGCCGGC 875
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 596 CAACATCGCTGGCTTCGTTAACCTCCTCGAAGTCTGTAAATCCGCTAATCCTCAGCCGGC 655
Query 876 GATCGTGTGGGCATCGTCTAGCTCCGTCTACGGTTTAAACACCAAAGTCCCCTTCTCTGA 935
|||||||||||||||||| || || |||||||| ||||||||||||||||| ||||||||
Sbjct 656 GATCGTGTGGGCATCGTCAAGTTCGGTCTACGGATTAAACACCAAAGTCCCGTTCTCTGA 715
Query 936 GAAAGACAGAACAGATCAGCCTGCGAGTCTCTACGCTGCGACCAAGAAAGCTGGAGAAGA 995
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GAAAGACAGAACAGACCAGCCTGCGAGTCTCTACGCTGCGACCAAGAAAGCTGGAGAAGA 775
Query 996 GATTGCCCACACTTACAACCACATCTACGGGCTCTCTCTCACCGGCTTGAGGTTTTTCAC 1055
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 776 GATTGCCCACACTTACAATCACATCTACGGGCTCTCTCTTACCGGGTTGAGGTTTTTCAC 835
Query 1056 GGTGTACGGGCCGTGGGGAAGACCTGACATGGCTTACTTCTTCTTCACCAGAGACATCCT 1115
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 836 GGTGTACGGGCCGTGGGGGAGACCTGACATGGCTTACTTCTTCTTCACCAGAGATATCCT 895
Query 1116 CAAAGGGAAAGCTATTTCGATCTTCGAAGGAGCCAATCACGGAACAGTGGCTAGGGATTT 1175
|||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 896 CAAAGGGAAAGCGATTTCAATCTTCCAAGGAGCCAACCACGGAACAGTGGCTAGGGATTT 955
Query 1176 CACATACATCGATGACATAGTGAAAGGATGTTTGGGGGCTCTGGACACGGCGGAGAAGAG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CACATACATCGATGACATAGTGAAAGGATGTTTGGGGGCTCTGGACACGGCGGAGAAGAG 1015
Query 1236 CACAGGGAGTGGTGGCAAGAAGCGGGGAGCGGCTCAGCTAAGGGTATTCAACCTGGGGAA 1295
|||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1016 CACAGGGAGTGGCGGTAAGAAGCGGGGTGCGGCTCAGCTGAGGGTCTTCAACCTGGGGAA 1075
Query 1296 CACATCTCCGGTGCCGGTGACGGATCTTGTGAGTATATTGGAGAGATTGTTGAAAGTGAA 1355
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1076 CACATCTCCGGTACCGGTAACGGATCTAGTGAGTATATTGGAGAGATTGTTGAAAGTGAA 1135
Query 1356 AGCCAAGAGGAACATGATGAAGCTGCCGAGGAATGGTGATGTGCCCTTCACACATGCTAA 1415
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1136 AGCGAAGAGGAACATGATGAAGCTGCCGAGGAATGGTGATGTGGCCTTCACACATGCTAA 1195
Query 1416 TATCAGTTCGGCACAGAGAGAGTTTGGGTACAAACCAAGCACGGATTTGCAGACTGGTCT 1475
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TATCAGTTGGGCAGAGAGAGAGTTTGGGTACAAACCAAGCACGGATTTGCAGACTGGTCT 1255
Query 1476 AAAGAAGTTTGTGAGATGGTATCTTGGTTACTACAAGCAG--GGGGG-AAAGAAAGTTGC 1532
||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 1256 AAACAAGTTTGTAAGATGGTATCTTGGTTACTACAAGCAGCAGGGGGGAAAGAAAGTCGC 1315
Query 1533 TGCTGCT-GCTTGA 1545
||| ||| | ||||
Sbjct 1316 TGCCGCTTGATTGA 1329
> Ahg935483 jgi|Araly1|935483|scaffold_403471.1
Length=1363
Score = 713 bits (386), Expect = 0.0
Identities = 883/1120 (79%), Gaps = 46/1120 (4%)
Strand=Plus/Plus
Query 416 CCGATTCC-TCTCGCCGCTCTCTTCGCACCTAC-TCTTGGGGCGGTCCCGCCTGGGAGAA 473
|||| ||| ||||||||||| || || ||| || | | || || || || ||||| ||
Sbjct 208 CCGA-TCCATCTCGCCGCTCACTCCGAACCAACAGC-TACGGAGGACCAGCTTGGGAAAA 265
Query 474 ACG-CGTCCGATCCTCCGCTCGTGTCCGCA-C-C--C--GCAACGGCGTCTCCGTTCTCG 526
||| | |||||||||| ||||| |||| | | | | |||||| || | ||| | |
Sbjct 266 ACGTC-TCCGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACAGTTTTAG 324
Query 527 TCACCGGGGCCGCCGGTTTCGTCGGGACTCACGTCTCTGCCGCTCTT-AAACGACGCGGC 585
||||||| || || ||||||||||| || |||||||| ||||| || ||||| |||||
Sbjct 325 TCACCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGC-ATTAAAACGCCGCGGA 383
Query 586 GACGGCGTTCTAGGCCTCGACAACTTCAACGATTACTACGACACC-TCTCTCAAGA-GAT 643
|||||||| | ||||||||||||||||||||||||||||| || ||||| || | ||
Sbjct 384 GACGGCGTAATCGGCCTCGACAACTTCAACGATTACTACGAT-CCATCTCTGAA-ACGAG 441
Query 644 CTCGACAAGCCCTCCTCGAGAGAAGCGG-AGTGTTCATCGTTGAAGGAGACATCAACGAT 702
| ||||||| | ||||| ||||| || | | |||||||| ||||||||||| |||||
Sbjct 442 CAAGACAAGCTTTGCTCGAAAGAAGTGGGA-TCTTCATCGTAGAAGGAGACATAAACGA- 499
Query 703 CTGTCTC-TC-CT-CAAGAAGCTCTTCGAGGTCGTC-CCTTTCACTCACGTCATGCATCT 758
| ||| | || | ||||| ||| || ||||| |||| ||| ||||| |||||| |
Sbjct 500 C-GTCGAATTGCTTCGT-AAGCTATTCAAGATCGTCTCCTT-CACACACGTTATGCAT-T 555
Query 759 T-GCCGCTCAAGCTGGTGT-CAGATACGCCATGGAGAACCCCGGCTCCTACGTTCACAGC 816
| || |||||||||||||| | | ||||| ||||| ||||| |||| || ||||| |||
Sbjct 556 TAGCAGCTCAAGCTGGTGTACGG-TACGCAATGGAAAACCCTAGCTCTTATGTTCATAGC 614
Query 817 AACATCGCTGG-TTTCGTTAACCTCCTCGAGGTCTGTAAATCCGCT-AATCCTCAGCCGG 874
|||||||| || ||| || || ||||||||| |||| ||||| | | ||||| || || |
Sbjct 615 AACATCGCCGGATTT-GTCAATCTCCTCGAGATCTGCAAATCTG-TGAATCCACAACCTG 672
Query 875 CGATCGTGTGGGCATCGTCTAGCTCCGTCTACGGTTTAAACACCAAAGTCCCCTTCTCTG 934
| || || ||||| |||||||||||||||||||| | ||||| ||||| || ||||| |
Sbjct 673 CTATAGTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACGAAAGTTCCGTTCTCGG 732
Query 935 AGAAAGACAGAACAGATCAGCCTGCGAGTCTCTACGCTGCGACCAAGAAAGCTGGAGAAG 994
||||||| | ||||||||| || |||||| | ||||| ||||| || ||||| || ||||
Sbjct 733 AGAAAGATAAAACAGATCAACCGGCGAGTTTATACGCCGCGACTAAAAAAGCCGGCGAAG 792
Query 995 AGATTGCCCACACTTACAACCACATCTACGGGCTCTCTCTCACCGGCTTGAGGTTTTTCA 1054
|||| || || || || ||||||||||| || | ||||| ||||| || ||||||||||
Sbjct 793 AGATCGCACATACCTATAACCACATCTATGGATTATCTCTAACCGGATTAAGGTTTTTCA 852
Query 1055 CGGTGTACGGGCCGTGGGGAAGACCTGACATGGCTTACTTCTTCTTCACCAGAGACATCC 1114
||||||| || || ||||||||||| |||||||| || ||||||||||| | ||| || |
Sbjct 853 CGGTGTATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATTC 912
Query 1115 TCAAAGGGAAAGCTATTTCGATCTTCGAAG-GAGCCAATCACGGAACAGTGGCTAGGGAT 1173
| ||||| ||| | |||||||| |||||| | || ||||||||||| ||||||||||||
Sbjct 913 TAAAAGGCAAATCGATTTCGATATTCGAATCG-GCGAATCACGGAACGGTGGCTAGGGAT 971
Query 1174 TTCACATACATCGATGACATAGTGAAAGGATGTTTGGGGGCTCTGGACACGGCGGAGAAG 1233
||||| |||||||| || ||||||||||||||||| | ||| || || ||||||||||||
Sbjct 972 TTCACTTACATCGACGATATAGTGAAAGGATGTTTAGCGGCGCTAGATACGGCGGAGAAG 1031
Query 1234 AGCACAGGGAGTGGTGGCAAGAAGCGGGGAGCGGCTCAGCTAAGGGTATTCAACCTGGGG 1293
|| ||||| ||||| || |||||| | || |||| || | || || || ||||| ||
Sbjct 1032 AGTACAGGAAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGAGAGTGTTTAACCTCGGA 1091
Query 1294 AACACATCTCCGGTGCCGGTGACGGATCTTGTGAGTATATTGGAGAGATTGTTGAAAGTG 1353
||||| || ||||||||||| | ||||| ||||| |||||||||||| |||||||||
Sbjct 1092 AACACGTCGCCGGTGCCGGTTTCAGATCTGGTGAGAATATTGGAGAGACAATTGAAAGTG 1151
Query 1354 AAAGCCAAGAGGAACATGATGAAGCTGCCGAGGAAT-GGTGATGTGCCCTTCACACATGC 1412
|| || |||| ||| |||| ||| |||| | ||| ||||| || || || || |||||
Sbjct 1152 AAGGCGAAGAAGAATTTGATTAAGATGCC-ACGAAACGGTGACGTTCCGTTTACTCATGC 1210
Query 1413 TAATATCAGTTCGGCACAGA-GAGAGTTTGGGTACAAACCAA-GCACGGATTTGCAGACT 1470
|||||| |||| || || | | ||| |||| || ||||| | | ||||||||||| ||
Sbjct 1211 TAATATTAGTTTAGCTCA-ACGTGAGCTTGGTTATAAACCGACG-ACGGATTTGCAAACC 1268
Query 1471 GGTCTAAAGAAGTTTGTGAGATGGTATCTTG-GTTACTAC 1509
||| | ||||||||||||||||||||| ||| |||| |||
Sbjct 1269 GGTTTGAAGAAGTTTGTGAGATGGTAT-TTGAGTTATTAC 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66848379975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5