BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02020.1
Length=2258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333455 jgi|Araly1|333455|fgenesh1_pg.C_scaffold_1000020 2523 0.0
> Ahg333455 jgi|Araly1|333455|fgenesh1_pg.C_scaffold_1000020
Length=2619
Score = 2523 bits (1366), Expect = 0.0
Identities = 1629/1751 (93%), Gaps = 38/1751 (2%)
Strand=Plus/Plus
Query 316 TTCCTCCTCTTCGCTTGAATTGGTCCTCAAGTACCACAACCAGACGAAGCACTCCTTGAA 375
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 894 TTCTTCTTCTTCGCTTGAATTGGTTCTCAAGTACCACAACCAGACGAAGCACTCCTTCAC 953
Query 376 CGGTTACGCGAGAGGTCCTCGTGGTCTCGACTGGGCCAATCAGCCTAATCCCTTCCGCCG 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CGGTTACGCGAGAGGTCCTCGTGGTCTCGACTGGGCCAATCAGCCTAATCCCTTCCGCCG 1013
Query 436 GTACCTCTCTGCTCCTCTTCTTCCTCTCCAACACCCCAATCACGAC-ATCGACGACGACT 494
|||||||||||||||||||| |||||||||||||||||||||||| || |||||| ||
Sbjct 1014 TTACCTCTCTGCTCCTCTTCTGCCTCTCCAACACCCCAATCACGACGAT-GACGACAACG 1072
Query 495 CCGACTCTCCTCTCTACTCTACTCTATTCGACTCGCTTCCTCCGCCCAAACCCATCTCTC 554
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1073 ACGACTCTCCTCTCTACTGTTGTTTATTCGACTCGCTTCCTCCGCCCAAACCCATCTCTC 1132
Query 555 TTC-CTACAATCTCTCACCTTTTCTACCATTCTCTCGCTCTCTCCGCCTGGAAGACCACC 613
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 -TCGCTACCATCTCTCACCTTTTCTACCATTCTCTCGCTCTCTCCGCCTGGAAGACCACC 1191
Query 614 GGATCCTCCACGTGGCCCCTCCGCGTCAACCCCAGCAGCGGTAACTTGCATCCCACCGAG 673
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GGATCCTCCACCTGGCCCCTCCGCGTCAACCCCAGCAGCGGTAACTTGCATCCCACCGAG 1251
Query 674 GCCTATCTCATTGCTCCTCCCATCCCTTCCCTCTCCCAATCCGCTTTCGTCTCCCACTAT 733
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1252 GCCTATCTCATTGCTCCTCCCATCCCTTCCCTCTCCCAATCCGCTTTCGTCGCCCACTAT 1311
Query 734 GCTCCCAAAGAGCATTCTTTGGAGGTTAGAGCTCACATCCCCTCTTCCTTTTTCCCCAAC 793
|||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1312 GCTCCCAAAGAGCATTCTTTGGAGGTTAGAGCTCACATCCCCTCTTCC----T------- 1360
Query 794 TTCTTCCCGGAGAATTCTTTTCTCATCGGAATTTCTTCAATTTTCTGGCGTGAAGCTTGG 853
|| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1361 TT-TTCCCGGAGAATTCTTTTCTCATCGGCATTTCTTCTATCTTCTGGCGTGAAGCTTGG 1419
Query 854 AAGTACGGAGAACGAGCGTTTCGTTACTGTAACCACGACGTCGGCCACGCCATTGCCGCT 913
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1420 AAGTACGGAGAACGAGCGTTTCGGTACTGTAACCACGACGTCGGCCACGCCATTGCCGCT 1479
Query 914 CTCTCCATTGCAGCCGCAGACCTAGGCTGGGACTTGAAGCTTCTCGAC-GCTTTCGGAGC 972
|||||||||||||||||||| || |||||||||||||||||||||||| || ||||||||
Sbjct 1480 CTCTCCATTGCAGCCGCAGAGCTTGGCTGGGACTTGAAGCTTCTCGACGGC-TTCGGAGC 1538
Query 973 TGATGATCTCAAGAGGCTTATGGGTCTCCCCGAATTTCAGTTACCTGAAGGTAAAGGTAA 1032
|||||||||||||||||||||||| ||||| ||||||||| ||||| | ||||||
Sbjct 1539 TGATGATCTCAAGAGGCTTATGGGGCTCCCTGAATTTCAGATACCTTCTTCTTCAGGTAA 1598
Query 1033 AGCTGAGCTCCCTGAGATTGAATTCGAGCATCCTGACTGCTTACTCCTTGTTTTCCCCAA 1092
|| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1599 AGGTAAGCTCCCTGAGATTGAATTCGAGCATCCTGACTGCTTGCTCCTTGTTTTCCCCAA 1658
Query 1093 CGGAACTAGTAGAGAACATCTCAACTTAGACTACCTCGCAATTAGCTCTGCCCTTAGAGA 1152
|||||||||||||| | ||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1659 CGGAACTAGTAGAGGAGATCTCAACTTAGACTACCTCGGTATTAGCTCTGCCCTAAGAGA 1718
Query 1153 CTTCCCAAGCCTAGAATGGACTGGAAACCCCAATACTCTGAGCAAAGAGCATTTGTGTTG 1212
||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1719 CTTCCCAAGCCTAGAGTGGAATGGAAACCCCAATACTCTGAGCAAAGAGCATCTGTGTTG 1778
Query 1213 GGATATCATCTACAGGACAGCCAAGGCTGTAGAAAAGCCTCCATTGATCTACTCCACCTC 1272
|||||||||||| ||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 1779 GGATATCATCTATAGGACAGCCAAGGCTGTAGAAAAGCCTTCATTGATCTACT-CA--AC 1835
Query 1273 TTCTTCTTCAATTGATGTTGCTTCCTTCACAAGCAGTCGTGCTCTGTTTAGCCACAGTTC 1332
|||||||| ||| || |||| |||||||||||| |||||||||||||||||| |||
Sbjct 1836 ATCTTCTTC-ATT--TGATGCTCCCTTCACAAGCA---GTGCTCTGTTTAGCCACACTTC 1889
Query 1333 ATATAATAAGTTAACGGTGAGGCAAGTTGTAAGGACGAGAAGAAGTGCTGTTGATATGGA 1392
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1890 TTATAACAAGTTAACGGCCAGGCAAGTTGTAAGGACGAGAAGAAGTGCTGTTGATATGGA 1949
Query 1393 CGCTGTTACTTGTATAGACATGTCTTCGTTTTACCAGATGCTGATGCACTGTCTT-C--C 1449
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | |
Sbjct 1950 CGCTGTTACTTGTATAGACATGTCTGCGTTTTACCAGATATTGATGCACTGTCTTCCTTC 2009
Query 1450 T---TCCAC---AGGCGAGTCCCAAAAAGAGCAACTTGCGCTGCCGTTTCGAGCTCTTCC 1503
| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2010 TGGCTCCACGAGAGGGGAGCCCCAAAAAGAGCAACTTGCGCTGCCGTTTCGAGCTCTTCC 2069
Query 1504 TTGGGATACTGCTGAGGTTCATCTTGCCTTGTTTGTTCACAGAGTTTCGGGTTTGCCTAA 1563
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 2070 TTGGGATACTGCTGAGGTTCATCTTGCCTTGTTTGTTCACAGAGTTTTGGGTTTACCAAA 2129
Query 1564 GGGACTGTATC-TCCTAGTCAGAAACGAGGATCATCTCAGTGATCTCAAGACAGCTACGA 1622
||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2130 GGGACTGTA-CTTCCTAGTCAGAAACGAGGATCATCTCAGCGATCTCAAGACAGCTACGA 2188
Query 1623 GGCCTGAATTTGAGTGGACTAAACCAGATGGATGTCCGGACAATCTTCCTCTGTACAAGC 1682
|||||||||||||||||| |||||||||||||| || | |||||||||||| |||||||
Sbjct 2189 GGCCTGAATTTGAGTGGAAGAAACCAGATGGATGCCCAGCCAATCTTCCTCTATACAAGC 2248
Query 1683 TCGCCGAGGGTGATTGCCAGAGGCTGGCAAAAGGGCTATCATGTCATCAGGACATTGCAG 1742
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2249 TCACCGAGGGTGATTGCCAGAAGCTGGCAAAAGGGCTATCATGTCATCAGGACATTGCAG 2308
Query 1743 GGGATGGATGCTTCAGCTTAGGCATGATAGCTCGGTTTGAACCAGCACTGCGGGAGAAGG 1802
||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 2309 GGGATGGATGCTTCAGCCTAGGTATGGTAGCTCGGTTTGAACCAGCGCTGCGGGAGAAGG 2368
Query 1803 GCTCATGGATGTACCCTCGACTGTTCTGGGAGACGGGTGTTGTTGGACAAGTTTTGTACC 1862
|||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2369 GCTCATGGGTGTACCCTCGACTGTTCTGGGAGACGGGTGTTATTGGGCAAGTTTTGTACC 2428
Query 1863 TGGAAGCACACGCAATGGGGATCTCAGCAACCGGGATTGGGTGCTATTTCGATGATCCAG 1922
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2429 TGGAAGCGCACGCAATGGGGATCTCAGCAACCGGGATAGGGTGCTATTTCGATGATCCAG 2488
Query 1923 TGCACGAGGTTCTGGGGATTAATGACTCTAGCTTTCAGAGTCTGTACCATTTCACTGTGG 1982
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2489 TGCACGAGGTTCTGGGGATAAAAGACTCTAGCTTTCAGAGTCTGTACCATTTCACTGTGG 2548
Query 1983 GAGGTCCAGTTGTAGACAAGCGGATCATGACTCTTCCTGCTTATCCTGGTCCCACCACCA 2042
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2549 GAGGTCCAGTTGTAGACAAGCGGATCATGACTCTTCCTGCTTATCCTGGTCCTACCACCA 2608
Query 2043 CCGTTGCCTAG 2053
|||||||||||
Sbjct 2609 CCGTTGCCTAG 2619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85017426840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5